Wall clock time and date at job start Tue Mar 31 2020 08:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46950 * 2 1 4 4 C 1.52996 * 109.47249 * 240.00626 * 2 1 3 5 5 C 1.53002 * 109.47201 * 174.99759 * 4 2 1 6 6 N 1.46505 * 109.46959 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99767 * 179.97438 * 6 5 4 8 8 O 1.21625 * 119.99934 * 359.97438 * 7 6 5 9 9 C 1.47166 * 119.99863 * 179.97438 * 7 6 5 10 10 C 1.35748 * 125.12956 * 179.97438 * 9 7 6 11 11 C 1.46421 * 106.14005 * 180.02562 * 10 9 7 12 12 N 1.32945 * 133.88632 * 180.02562 * 11 10 9 13 13 C 1.31437 * 121.38536 * 179.97438 * 12 11 10 14 14 C 1.38868 * 121.17785 * 359.74738 * 13 12 11 15 15 C 1.38207 * 119.71593 * 0.50974 * 14 13 12 16 16 C 1.39304 * 118.33126 * 359.50254 * 15 14 13 17 17 O 1.34581 * 133.42264 * 180.25282 * 16 15 14 18 18 N 1.46501 * 109.47493 * 120.00170 * 2 1 3 19 19 C 1.36944 * 120.00034 * 275.00128 * 18 2 1 20 20 H 1.08001 * 119.99860 * 0.02562 * 19 18 2 21 21 C 1.38805 * 119.99904 * 179.97438 * 19 18 2 22 22 N 1.31622 * 119.99993 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00177 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47520 * 89.99403 * 23 21 19 25 25 H 1.48496 * 109.47090 * 209.99959 * 23 21 19 26 26 H 1.48503 * 109.46798 * 329.99143 * 23 21 19 27 27 H 1.09002 * 109.46950 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47256 * 299.99229 * 1 2 3 29 29 H 1.08998 * 109.47391 * 59.99757 * 1 2 3 30 30 H 1.08998 * 109.47311 * 54.99511 * 4 2 1 31 31 H 1.09003 * 109.46768 * 294.99333 * 4 2 1 32 32 H 1.08998 * 109.47191 * 59.99679 * 5 4 2 33 33 H 1.09003 * 109.46912 * 299.99486 * 5 4 2 34 34 H 0.97001 * 119.99917 * 359.97438 * 6 5 4 35 35 H 1.07996 * 126.93161 * 0.02562 * 10 9 7 36 36 H 1.07996 * 119.41488 * 179.97438 * 13 12 11 37 37 H 1.08005 * 120.14295 * 180.26364 * 14 13 12 38 38 H 1.08002 * 120.83757 * 179.78101 * 15 14 13 39 39 H 0.96995 * 119.99815 * 95.00204 * 18 2 1 40 40 H 0.96994 * 120.00238 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6131 -1.3137 6 7 4.0532 -1.3041 -2.5097 7 6 5.3741 -1.3394 -2.7754 8 8 6.1605 -0.7973 -2.0225 9 6 5.8647 -2.0341 -3.9764 10 6 7.1678 -2.1334 -4.3438 11 6 7.1819 -2.9020 -5.5900 12 7 8.1456 -3.3136 -6.4081 13 6 7.8745 -4.0090 -7.4900 14 6 6.5683 -4.3464 -7.8191 15 6 5.5292 -3.9380 -7.0045 16 6 5.8348 -3.2018 -5.8621 17 8 5.0876 -2.6670 -4.8788 18 7 2.0184 -0.6906 1.1961 19 6 2.1492 -0.0075 2.3758 20 1 1.8919 1.0403 2.4244 21 6 2.6115 -0.6620 3.5092 22 7 2.7377 -0.0053 4.6429 23 14 3.0558 -2.4744 3.4252 24 1 4.4886 -2.6166 3.0618 25 1 2.8158 -3.1047 4.7482 26 1 2.2161 -3.1429 2.3989 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.6053 -0.2616 -2.1370 31 1 1.7517 -1.7714 -1.2056 32 1 3.9995 -1.0726 -0.4260 33 1 3.8531 0.4372 -1.3574 34 1 3.4259 -1.7362 -3.1103 35 1 8.0218 -1.7275 -3.8221 36 1 8.6823 -4.3267 -8.1325 37 1 6.3649 -4.9220 -8.7101 38 1 4.5062 -4.1873 -7.2452 39 1 2.2491 -1.6317 1.1525 40 1 3.0610 -0.4626 5.4348 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753011292.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:26 Heat of formation + Delta-G solvation = 17.256759 kcal Electronic energy + Delta-G solvation = -23333.406548 eV Core-core repulsion = 19729.232413 eV Total energy + Delta-G solvation = -3604.174135 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.09580 -39.86955 -39.11274 -36.87187 -34.72974 -33.64117 -32.32727 -31.94492 -30.73416 -29.74811 -28.44776 -25.46423 -23.93101 -23.57946 -22.70926 -21.92392 -21.06973 -20.07335 -18.83561 -18.12556 -17.55748 -16.98332 -16.91431 -15.98642 -15.96024 -15.59341 -14.83772 -14.48187 -14.10531 -14.05884 -13.84185 -13.58425 -13.51112 -13.44167 -13.07627 -13.03729 -12.55489 -12.25109 -12.00411 -11.32940 -11.09523 -11.02946 -10.85438 -10.71438 -10.59901 -10.30495 -10.01021 -9.94713 -9.57861 -9.49257 -9.28720 -9.00468 -8.92794 -7.28011 -5.75887 -3.11928 0.02549 0.63928 1.36508 1.92538 2.81304 2.88486 3.26266 3.38079 3.41406 3.47074 3.64707 3.94463 4.24707 4.36019 4.49963 4.60134 4.70882 4.89254 5.05104 5.12169 5.14445 5.29629 5.41561 5.44336 5.55269 5.57086 5.69514 5.81830 5.89337 6.00984 6.11806 6.17788 6.25178 6.34900 6.42618 6.45327 6.74799 6.94674 7.26556 7.37072 7.87057 7.99654 8.42922 9.20844 9.93357 10.12112 11.42493 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.022555 B = 0.002748 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.112694 B =10186.639957 C =10708.639647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.060 0.940 4 C -0.137 4.137 5 C 0.117 3.883 6 N -0.712 5.712 7 C 0.593 3.407 8 O -0.502 6.502 9 C 0.000 4.000 10 C -0.107 4.107 11 C 0.065 3.935 12 N -0.439 5.439 13 C 0.101 3.899 14 C -0.144 4.144 15 C -0.060 4.060 16 C 0.015 3.985 17 O -0.178 6.178 18 N -0.748 5.748 19 C -0.243 4.243 20 H 0.091 0.909 21 C 0.006 3.994 22 N -0.933 5.933 23 Si 0.881 3.119 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.278 1.278 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.404 0.596 35 H 0.180 0.820 36 H 0.168 0.832 37 H 0.152 0.848 38 H 0.148 0.852 39 H 0.360 0.640 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.054 -8.782 -28.506 30.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.078 0.922 4 C -0.176 4.176 5 C -0.005 4.005 6 N -0.362 5.362 7 C 0.376 3.624 8 O -0.378 6.378 9 C -0.052 4.052 10 C -0.128 4.128 11 C -0.065 4.065 12 N -0.148 5.148 13 C -0.064 4.064 14 C -0.164 4.164 15 C -0.086 4.086 16 C -0.035 4.035 17 O -0.078 6.078 18 N -0.392 5.392 19 C -0.372 4.372 20 H 0.109 0.891 21 C -0.190 4.190 22 N -0.581 5.581 23 Si 0.712 3.288 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.204 1.204 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.239 0.761 35 H 0.197 0.803 36 H 0.185 0.815 37 H 0.170 0.830 38 H 0.166 0.834 39 H 0.193 0.807 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.164 -7.952 -27.444 29.036 hybrid contribution -0.780 -1.845 -0.448 2.053 sum 4.384 -9.797 -27.892 29.886 Atomic orbital electron populations 1.22394 0.98545 1.00885 1.00579 1.20122 0.92126 0.95905 0.84846 0.92228 1.22130 0.93510 1.01981 0.99946 1.21635 0.94805 0.97764 0.86248 1.46061 1.06440 1.55975 1.27769 1.16632 0.83338 0.80104 0.82325 1.90955 1.55473 1.44784 1.46538 1.22297 0.89914 1.00318 0.92631 1.22544 0.96916 0.99532 0.93846 1.20663 0.88795 1.00536 0.96468 1.67051 1.35480 1.09200 1.03086 1.22886 0.96139 0.94314 0.93110 1.22093 0.92987 1.00741 1.00570 1.20522 1.01540 0.96184 0.90376 1.20580 0.90973 0.99890 0.92072 1.84004 1.35819 1.58286 1.29714 1.42839 1.79790 1.09315 1.07255 1.19051 1.37001 0.95514 0.85682 0.89140 1.24658 1.01392 0.97373 0.95589 1.69693 1.52570 1.35553 1.00288 0.86602 0.78578 0.86883 0.76765 1.20965 1.21791 1.20438 0.93633 0.92172 0.94195 0.91184 0.91547 0.89658 0.90594 0.76148 0.80286 0.81498 0.83033 0.83435 0.80710 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.49 37.16 0.35 -2.31 16 2 C 0.18 3.17 2.89 -67.93 -0.20 2.98 16 3 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 4 C -0.14 -1.84 4.87 -26.73 -0.13 -1.97 16 5 C 0.12 1.73 5.56 -4.04 -0.02 1.71 16 6 N -0.71 -8.88 5.55 -61.46 -0.34 -9.22 16 7 C 0.59 8.44 7.80 -12.63 -0.10 8.34 16 8 O -0.50 -8.97 16.83 5.26 0.09 -8.88 16 9 C 0.00 0.00 7.07 -36.85 -0.26 -0.26 16 10 C -0.11 -1.31 10.81 -37.18 -0.40 -1.71 16 11 C 0.06 0.76 7.52 -83.18 -0.63 0.14 16 12 N -0.44 -4.81 10.41 -9.87 -0.10 -4.92 16 13 C 0.10 0.72 11.17 -17.49 -0.20 0.52 16 14 C -0.14 -0.77 10.09 -39.36 -0.40 -1.16 16 15 C -0.06 -0.41 10.19 -39.20 -0.40 -0.81 16 16 C 0.02 0.16 7.42 -38.27 -0.28 -0.12 16 17 O -0.18 -1.96 10.28 3.37 0.03 -1.92 16 18 N -0.75 -16.88 4.38 -53.43 -0.23 -17.12 16 19 C -0.24 -6.69 10.41 -15.06 -0.16 -6.85 16 20 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 21 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 22 N -0.93 -29.36 13.97 55.49 0.78 -28.59 16 23 Si 0.88 22.21 27.74 -169.99 -4.71 17.49 16 24 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 H -0.28 -6.54 6.52 56.52 0.37 -6.18 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 1.53 7.75 -51.93 -0.40 1.13 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.40 3.90 8.19 -40.82 -0.33 3.57 16 35 H 0.18 2.03 8.06 -52.49 -0.42 1.61 16 36 H 0.17 0.62 8.06 -52.49 -0.42 0.19 16 37 H 0.15 0.25 8.06 -52.48 -0.42 -0.17 16 38 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.36 8.07 5.66 -40.82 -0.23 7.84 16 40 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 347.81 15.07 5.24 5.24 Total: -1.00 -34.67 347.81 -7.37 -42.04 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -5.21 Total: 7.32 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -2.91 Total: -1.44 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 0.10 Total: -59.84 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.12 Total: -10.81 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.49 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.67 -7.37 -42.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753011292.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.296 kcal (2) G-P(sol) polarization free energy of solvation -34.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds