Wall clock time and date at job start Tue Mar 31 2020 08:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46950 * 2 1 4 4 C 1.52996 * 109.47249 * 240.00626 * 2 1 3 5 5 C 1.53002 * 109.47201 * 174.99759 * 4 2 1 6 6 N 1.46505 * 109.46959 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99767 * 179.97438 * 6 5 4 8 8 O 1.21625 * 119.99934 * 359.97438 * 7 6 5 9 9 C 1.47166 * 119.99863 * 179.97438 * 7 6 5 10 10 C 1.35748 * 125.12956 * 179.97438 * 9 7 6 11 11 C 1.46421 * 106.14005 * 180.02562 * 10 9 7 12 12 N 1.32945 * 133.88632 * 180.02562 * 11 10 9 13 13 C 1.31437 * 121.38536 * 179.97438 * 12 11 10 14 14 C 1.38868 * 121.17785 * 359.74738 * 13 12 11 15 15 C 1.38207 * 119.71593 * 0.50974 * 14 13 12 16 16 C 1.39304 * 118.33126 * 359.50254 * 15 14 13 17 17 O 1.34581 * 133.42264 * 180.25282 * 16 15 14 18 18 N 1.46501 * 109.47493 * 120.00170 * 2 1 3 19 19 C 1.36944 * 120.00034 * 275.00128 * 18 2 1 20 20 H 1.08001 * 119.99860 * 0.02562 * 19 18 2 21 21 C 1.38805 * 119.99904 * 179.97438 * 19 18 2 22 22 N 1.31622 * 119.99993 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00177 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47520 * 89.99403 * 23 21 19 25 25 H 1.48496 * 109.47090 * 209.99959 * 23 21 19 26 26 H 1.48503 * 109.46798 * 329.99143 * 23 21 19 27 27 H 1.09002 * 109.46950 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47256 * 299.99229 * 1 2 3 29 29 H 1.08998 * 109.47391 * 59.99757 * 1 2 3 30 30 H 1.08998 * 109.47311 * 54.99511 * 4 2 1 31 31 H 1.09003 * 109.46768 * 294.99333 * 4 2 1 32 32 H 1.08998 * 109.47191 * 59.99679 * 5 4 2 33 33 H 1.09003 * 109.46912 * 299.99486 * 5 4 2 34 34 H 0.97001 * 119.99917 * 359.97438 * 6 5 4 35 35 H 1.07996 * 126.93161 * 0.02562 * 10 9 7 36 36 H 1.07996 * 119.41488 * 179.97438 * 13 12 11 37 37 H 1.08005 * 120.14295 * 180.26364 * 14 13 12 38 38 H 1.08002 * 120.83757 * 179.78101 * 15 14 13 39 39 H 0.96995 * 119.99815 * 95.00204 * 18 2 1 40 40 H 0.96994 * 120.00238 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6131 -1.3137 6 7 4.0532 -1.3041 -2.5097 7 6 5.3741 -1.3394 -2.7754 8 8 6.1605 -0.7973 -2.0225 9 6 5.8647 -2.0341 -3.9764 10 6 7.1678 -2.1334 -4.3438 11 6 7.1819 -2.9020 -5.5900 12 7 8.1456 -3.3136 -6.4081 13 6 7.8745 -4.0090 -7.4900 14 6 6.5683 -4.3464 -7.8191 15 6 5.5292 -3.9380 -7.0045 16 6 5.8348 -3.2018 -5.8621 17 8 5.0876 -2.6670 -4.8788 18 7 2.0184 -0.6906 1.1961 19 6 2.1492 -0.0075 2.3758 20 1 1.8919 1.0403 2.4244 21 6 2.6115 -0.6620 3.5092 22 7 2.7377 -0.0053 4.6429 23 14 3.0558 -2.4744 3.4252 24 1 4.4886 -2.6166 3.0618 25 1 2.8158 -3.1047 4.7482 26 1 2.2161 -3.1429 2.3989 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.6053 -0.2616 -2.1370 31 1 1.7517 -1.7714 -1.2056 32 1 3.9995 -1.0726 -0.4260 33 1 3.8531 0.4372 -1.3574 34 1 3.4259 -1.7362 -3.1103 35 1 8.0218 -1.7275 -3.8221 36 1 8.6823 -4.3267 -8.1325 37 1 6.3649 -4.9220 -8.7101 38 1 4.5062 -4.1873 -7.2452 39 1 2.2491 -1.6317 1.1525 40 1 3.0610 -0.4626 5.4348 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753011292.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:25 Heat of formation + Delta-G solvation = -8.694725 kcal Electronic energy + Delta-G solvation = -23334.531889 eV Core-core repulsion = 19729.232413 eV Total energy + Delta-G solvation = -3605.299476 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.85995 -40.91794 -39.85235 -38.33341 -36.10555 -34.33215 -34.23665 -32.66127 -31.93763 -31.14802 -29.69206 -26.39370 -25.43832 -24.53739 -23.86983 -22.84330 -22.10620 -21.50896 -20.01286 -19.40768 -18.81727 -17.82784 -17.52787 -17.15502 -17.00036 -16.73483 -16.33432 -15.84647 -15.37919 -15.20847 -14.79540 -14.65836 -14.45784 -14.35184 -14.29856 -14.10218 -13.73751 -13.63490 -13.58426 -12.93157 -12.64020 -12.31759 -12.23608 -12.09754 -11.82401 -11.77532 -11.71043 -11.45545 -10.98704 -10.56762 -10.39820 -10.20271 -9.78370 -9.29172 -8.00622 -5.32365 -0.72345 0.03100 0.58104 1.08774 1.35008 1.40182 1.45652 1.83041 1.85367 2.48694 2.64334 2.88567 3.26557 3.31800 3.55179 3.62692 3.72579 3.90472 3.92366 4.12813 4.17330 4.23733 4.28156 4.48364 4.64295 4.67062 4.72895 4.81071 4.89678 4.98052 5.01113 5.02700 5.10836 5.18761 5.29041 5.36668 5.59115 5.67938 5.81695 6.23847 6.25643 6.76413 6.83422 7.11243 7.88326 8.05330 9.21380 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.022555 B = 0.002748 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.112694 B =10186.639957 C =10708.639647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.168 3.832 3 H 0.046 0.954 4 C -0.120 4.120 5 C 0.123 3.877 6 N -0.695 5.695 7 C 0.594 3.406 8 O -0.549 6.549 9 C -0.011 4.011 10 C -0.115 4.115 11 C 0.032 3.968 12 N -0.477 5.477 13 C 0.100 3.900 14 C -0.121 4.121 15 C -0.060 4.060 16 C 0.001 3.999 17 O -0.174 6.174 18 N -0.751 5.751 19 C -0.219 4.219 20 H 0.058 0.942 21 C -0.068 4.068 22 N -0.987 5.987 23 Si 0.949 3.051 24 H -0.287 1.287 25 H -0.298 1.298 26 H -0.247 1.247 27 H 0.053 0.947 28 H 0.029 0.971 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.421 0.579 35 H 0.174 0.826 36 H 0.201 0.799 37 H 0.200 0.800 38 H 0.180 0.820 39 H 0.364 0.636 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.833 -11.589 -33.130 35.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.060 3.940 3 H 0.064 0.936 4 C -0.158 4.158 5 C 0.000 4.000 6 N -0.346 5.346 7 C 0.380 3.620 8 O -0.428 6.428 9 C -0.063 4.063 10 C -0.137 4.137 11 C -0.096 4.096 12 N -0.187 5.187 13 C -0.066 4.066 14 C -0.140 4.140 15 C -0.087 4.087 16 C -0.049 4.049 17 O -0.074 6.074 18 N -0.395 5.395 19 C -0.351 4.351 20 H 0.076 0.924 21 C -0.259 4.259 22 N -0.638 5.638 23 Si 0.777 3.223 24 H -0.214 1.214 25 H -0.225 1.225 26 H -0.171 1.171 27 H 0.072 0.928 28 H 0.048 0.952 29 H 0.096 0.904 30 H 0.129 0.871 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.259 0.741 35 H 0.191 0.809 36 H 0.218 0.782 37 H 0.217 0.783 38 H 0.198 0.802 39 H 0.197 0.803 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.876 -10.774 -32.155 34.133 hybrid contribution -0.360 -0.952 0.729 1.252 sum 3.515 -11.726 -31.426 33.726 Atomic orbital electron populations 1.22250 0.96704 1.01542 1.00991 1.20427 0.93324 0.95447 0.84765 0.93591 1.21986 0.92029 1.02750 0.99051 1.21407 0.95827 0.96964 0.85818 1.45817 1.06235 1.55333 1.27167 1.16809 0.83368 0.79478 0.82391 1.90924 1.56656 1.46914 1.48352 1.21714 0.89964 1.01720 0.92851 1.22674 0.96911 0.99486 0.94588 1.20672 0.90036 1.02025 0.96863 1.67043 1.36068 1.10965 1.04603 1.23652 0.98374 0.92570 0.91992 1.22667 0.91526 0.98833 1.00995 1.21095 1.03760 0.94907 0.88889 1.21064 0.90362 1.00622 0.92863 1.83950 1.35451 1.58293 1.29732 1.42872 1.80027 1.09458 1.07184 1.19028 1.34254 0.94361 0.87417 0.92415 1.25451 1.02819 1.02201 0.95384 1.69876 1.55137 1.37572 1.01201 0.85499 0.78256 0.81486 0.77089 1.21434 1.22484 1.17114 0.92799 0.95222 0.90364 0.87121 0.89937 0.93118 0.91706 0.74101 0.80885 0.78237 0.78267 0.80222 0.80318 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.67 9.49 71.98 0.68 -3.99 16 2 C 0.17 5.70 2.89 44.99 0.13 5.83 16 3 H 0.05 1.69 8.08 -2.39 -0.02 1.67 16 4 C -0.12 -2.87 4.87 30.59 0.15 -2.72 16 5 C 0.12 3.54 5.56 86.38 0.48 4.02 16 6 N -0.69 -16.59 5.55 -466.61 -2.59 -19.18 16 7 C 0.59 17.26 7.80 86.59 0.68 17.94 16 8 O -0.55 -20.69 16.83 -4.11 -0.07 -20.76 16 9 C -0.01 -0.26 7.07 24.04 0.17 -0.09 16 10 C -0.12 -2.95 10.81 23.82 0.26 -2.69 16 11 C 0.03 0.74 7.52 41.70 0.31 1.06 16 12 N -0.48 -9.95 10.41 -185.13 -1.93 -11.88 16 13 C 0.10 1.09 11.17 84.90 0.95 2.04 16 14 C -0.12 -0.70 10.09 22.41 0.23 -0.47 16 15 C -0.06 -0.60 10.19 22.52 0.23 -0.37 16 16 C 0.00 0.02 7.42 23.12 0.17 0.20 16 17 O -0.17 -3.63 10.28 -10.84 -0.11 -3.74 16 18 N -0.75 -33.56 4.38 -322.95 -1.41 -34.98 16 19 C -0.22 -12.41 10.41 84.03 0.87 -11.53 16 20 H 0.06 3.59 8.06 -2.91 -0.02 3.56 16 21 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 22 N -0.99 -64.55 13.97 21.65 0.30 -64.25 16 23 Si 0.95 46.60 27.74 68.60 1.90 48.51 16 24 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 25 H -0.30 -14.86 7.11 99.48 0.71 -14.16 16 26 H -0.25 -10.70 6.52 99.48 0.65 -10.05 16 27 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.05 1.83 7.75 -2.39 -0.02 1.82 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.42 7.08 8.19 -92.71 -0.76 6.33 16 35 H 0.17 4.37 8.06 -2.91 -0.02 4.34 16 36 H 0.20 0.64 8.06 -2.91 -0.02 0.62 16 37 H 0.20 -0.73 8.06 -2.91 -0.02 -0.76 16 38 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 39 H 0.36 15.72 5.66 -92.71 -0.52 15.20 16 40 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -81.53 347.81 1.60 -79.92 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -0.26 Total: 20.71 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 5.78 Total: 5.64 kcal Atomic # 7 Polarization: -124.66 SS G_CDS: -5.63 Total: -130.29 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.18 Total: -24.50 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.90 Total: 48.51 kcal Total: -81.53 1.60 -79.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753011292.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.227 kcal (2) G-P(sol) polarization free energy of solvation -81.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds