Wall clock time and date at job start Tue Mar 31 2020 08:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 274.72222 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47159 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47290 * 120.00044 * 9 7 5 12 12 H 1.48503 * 109.47163 * 240.00049 * 9 7 5 13 13 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 14 14 H 1.08998 * 109.47187 * 174.99859 * 13 2 1 15 15 C 1.53001 * 109.47314 * 294.99899 * 13 2 1 16 16 N 1.46500 * 109.47037 * 55.00170 * 13 2 1 17 17 C 1.34776 * 120.00386 * 154.99951 * 16 13 2 18 18 O 1.21657 * 119.99662 * 359.97438 * 17 16 13 19 19 C 1.46984 * 120.00369 * 179.97438 * 17 16 13 20 20 C 1.35850 * 125.11968 * 179.72516 * 19 17 16 21 21 C 1.46097 * 106.06569 * 179.86106 * 20 19 17 22 22 C 1.39451 * 135.07415 * 180.08603 * 21 20 19 23 23 N 1.31677 * 120.07568 * 180.30118 * 22 21 20 24 24 C 1.32305 * 122.14099 * 0.02562 * 23 22 21 25 25 C 1.37756 * 121.58636 * 0.02562 * 24 23 22 26 26 C 1.39243 * 118.95298 * 359.97438 * 25 24 23 27 27 O 1.34281 * 134.37359 * 180.02562 * 26 25 24 28 28 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 30 30 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 31 31 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 32 32 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.47050 * 179.97438 * 15 13 2 34 34 H 1.08998 * 109.47150 * 300.00000 * 15 13 2 35 35 H 1.09000 * 109.47005 * 60.00407 * 15 13 2 36 36 H 0.96999 * 120.00147 * 334.99483 * 16 13 2 37 37 H 1.08003 * 126.96621 * 359.97438 * 20 19 17 38 38 H 1.07996 * 119.96066 * 0.33160 * 22 21 20 39 39 H 1.08003 * 119.20610 * 179.97438 * 24 23 22 40 40 H 1.07998 * 120.52135 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1544 -0.0060 2.3744 6 1 1.8976 1.0419 2.4228 7 6 2.6226 -0.6590 3.5063 8 7 2.9361 -1.9360 3.4471 9 14 2.8076 0.2746 5.1136 10 1 2.3910 1.6863 4.9169 11 1 1.9519 -0.3534 6.1523 12 1 4.2266 0.2330 5.5497 13 6 2.0400 -0.7213 -1.2492 14 1 3.1263 -0.6444 -1.2951 15 6 1.6352 -2.1955 -1.1879 16 7 1.4558 -0.1037 -2.4423 17 6 2.0912 -0.1938 -3.6275 18 8 3.1500 -0.7876 -3.7064 19 6 1.5048 0.4254 -4.8247 20 6 2.0565 0.4031 -6.0660 21 6 1.1334 1.1328 -6.9319 22 6 1.1041 1.4661 -8.2856 23 7 0.0976 2.1618 -8.7724 24 6 -0.9089 2.5673 -8.0155 25 6 -0.9592 2.2827 -6.6686 26 6 0.0767 1.5499 -6.0953 27 8 0.3401 1.1082 -4.8549 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 2.2491 -1.6318 1.1526 32 1 3.2629 -2.3923 4.2382 33 1 1.9982 -2.7093 -2.0781 34 1 2.0699 -2.6550 -0.3002 35 1 0.5489 -2.2724 -1.1421 36 1 0.6117 0.3701 -2.3794 37 1 2.9877 -0.0617 -6.3546 38 1 1.9077 1.1530 -8.9357 39 1 -1.7101 3.1358 -8.4643 40 1 -1.7894 2.6220 -6.0669 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755243939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:55 Heat of formation + Delta-G solvation = 20.075095 kcal Electronic energy + Delta-G solvation = -23772.436517 eV Core-core repulsion = 20168.384594 eV Total energy + Delta-G solvation = -3604.051923 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.07248 -39.94344 -39.21083 -37.07720 -34.11863 -33.33281 -32.26725 -31.80965 -30.40314 -29.27375 -28.27452 -25.44125 -24.41000 -23.86839 -23.17963 -22.13031 -20.95257 -19.42812 -18.64686 -18.35717 -17.45865 -16.88438 -16.32332 -15.91896 -15.70290 -15.01682 -14.90573 -14.59137 -14.46982 -14.20462 -13.84718 -13.76244 -13.54153 -13.48497 -12.87348 -12.53815 -12.07041 -11.99864 -11.72731 -11.37364 -11.01835 -10.87869 -10.77651 -10.60748 -10.37858 -10.28906 -10.15671 -10.02606 -9.83984 -9.72628 -9.10333 -8.99073 -8.75174 -7.06178 -5.83275 -3.13180 0.05149 0.80685 1.40171 1.97172 2.96839 2.98966 3.30767 3.39879 3.45705 3.47783 3.91921 3.96142 4.18104 4.43467 4.54040 4.56519 4.80344 4.95161 5.21976 5.22392 5.31445 5.38257 5.48887 5.55619 5.57370 5.71820 5.73110 5.92436 5.96646 6.05237 6.20001 6.28626 6.34553 6.40836 6.53630 6.64409 6.77899 6.99950 7.40983 7.46542 7.64820 7.98303 8.34969 9.46576 10.00640 10.35610 11.39269 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.032633 B = 0.002629 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.822867 B =10647.322275 C =11073.161514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.168 3.832 3 H 0.053 0.947 4 N -0.719 5.719 5 C -0.242 4.242 6 H 0.072 0.928 7 C -0.011 4.011 8 N -0.931 5.931 9 Si 0.908 3.092 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.291 1.291 13 C 0.133 3.867 14 H 0.093 0.907 15 C -0.161 4.161 16 N -0.702 5.702 17 C 0.594 3.406 18 O -0.512 6.512 19 C -0.016 4.016 20 C -0.103 4.103 21 C -0.199 4.199 22 C 0.175 3.825 23 N -0.495 5.495 24 C 0.116 3.884 25 C -0.160 4.160 26 C 0.103 3.897 27 O -0.178 6.178 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.032 0.968 31 H 0.387 0.613 32 H 0.256 0.744 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.404 0.596 37 H 0.177 0.823 38 H 0.167 0.833 39 H 0.170 0.830 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.722 6.629 -22.545 24.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.057 3.943 3 H 0.071 0.929 4 N -0.362 5.362 5 C -0.373 4.373 6 H 0.090 0.910 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.739 3.261 10 H -0.206 1.206 11 H -0.218 1.218 12 H -0.218 1.218 13 C 0.029 3.971 14 H 0.111 0.889 15 C -0.219 4.219 16 N -0.353 5.353 17 C 0.378 3.622 18 O -0.389 6.389 19 C -0.066 4.066 20 C -0.125 4.125 21 C -0.202 4.202 22 C 0.011 3.989 23 N -0.205 5.205 24 C -0.034 4.034 25 C -0.180 4.180 26 C 0.048 3.952 27 O -0.077 6.077 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.223 0.777 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.241 0.759 37 H 0.195 0.805 38 H 0.184 0.816 39 H 0.187 0.813 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.188 6.596 -22.999 24.982 hybrid contribution -0.269 0.166 1.844 1.871 sum -7.457 6.762 -21.155 23.428 Atomic orbital electron populations 1.22553 0.99217 1.01379 0.99868 1.20355 0.92294 0.95638 0.85974 0.92874 1.42453 1.78218 1.10714 1.04836 1.19263 1.36796 0.93998 0.87203 0.91036 1.24754 1.01834 0.96017 0.98167 1.69667 1.50505 1.08696 1.29000 0.86106 0.77368 0.78776 0.83839 1.20553 1.21845 1.21802 1.21514 0.99248 0.93155 0.83168 0.88864 1.22160 1.01770 0.95363 1.02587 1.46240 1.25659 1.55422 1.07982 1.16651 0.84280 0.80028 0.81259 1.90912 1.21192 1.42586 1.84221 1.22383 0.86559 1.00587 0.97085 1.22699 1.00320 0.99526 0.89924 1.20981 0.97236 1.05169 0.96826 1.22478 0.95387 0.90770 0.90306 1.67814 1.01988 1.11829 1.38843 1.22628 0.96030 0.95826 0.88904 1.21082 0.98575 1.02040 0.96324 1.19882 0.96323 0.96423 0.82616 1.84000 1.36525 1.58378 1.28833 0.92690 0.92192 0.94882 0.77732 0.93434 0.92925 0.90094 0.92333 0.75873 0.80539 0.81559 0.81317 0.83471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 9.01 37.16 0.33 -2.45 16 2 C 0.17 3.15 2.93 -67.93 -0.20 2.95 16 3 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 4 N -0.72 -17.16 5.03 -53.43 -0.27 -17.43 16 5 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16 9 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 13 C 0.13 2.21 2.62 -67.93 -0.18 2.04 16 14 H 0.09 1.74 7.58 -51.93 -0.39 1.35 16 15 C -0.16 -2.61 9.00 37.16 0.33 -2.27 16 16 N -0.70 -9.77 4.98 -55.02 -0.27 -10.04 16 17 C 0.59 8.57 7.76 -12.72 -0.10 8.47 16 18 O -0.51 -8.82 16.49 5.23 0.09 -8.73 16 19 C -0.02 -0.20 7.07 -36.90 -0.26 -0.46 16 20 C -0.10 -1.09 10.80 -37.29 -0.40 -1.49 16 21 C -0.20 -1.99 6.43 -105.22 -0.68 -2.67 16 22 C 0.17 1.49 11.28 -17.17 -0.19 1.30 16 23 N -0.49 -4.49 10.34 -13.00 -0.13 -4.63 16 24 C 0.12 0.84 11.13 -17.52 -0.20 0.65 16 25 C -0.16 -1.25 10.13 -39.38 -0.40 -1.65 16 26 C 0.10 1.08 7.48 -38.13 -0.29 0.79 16 27 O -0.18 -2.05 10.26 3.69 0.04 -2.01 16 28 H 0.05 0.91 6.57 -51.92 -0.34 0.57 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.03 0.43 6.29 -51.93 -0.33 0.10 16 31 H 0.39 9.74 5.77 -40.82 -0.24 9.50 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.46 6.29 -51.93 -0.33 1.14 16 35 H 0.06 0.88 6.57 -51.93 -0.34 0.54 16 36 H 0.40 4.91 6.29 -40.82 -0.26 4.65 16 37 H 0.18 1.57 8.06 -52.48 -0.42 1.15 16 38 H 0.17 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.17 0.67 8.06 -52.48 -0.42 0.25 16 40 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 340.20 15.07 5.13 5.13 Total: -1.00 -31.80 340.20 -6.91 -38.71 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -4.72 Total: 10.64 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -2.46 Total: -1.86 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.05 Total: -58.84 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.12 Total: -10.74 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.80 -6.91 -38.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755243939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.787 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds