Wall clock time and date at job start Tue Mar 31 2020 08:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 274.72222 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47159 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47290 * 120.00044 * 9 7 5 12 12 H 1.48503 * 109.47163 * 240.00049 * 9 7 5 13 13 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 14 14 H 1.08998 * 109.47187 * 174.99859 * 13 2 1 15 15 C 1.53001 * 109.47314 * 294.99899 * 13 2 1 16 16 N 1.46500 * 109.47037 * 55.00170 * 13 2 1 17 17 C 1.34776 * 120.00386 * 154.99951 * 16 13 2 18 18 O 1.21657 * 119.99662 * 359.97438 * 17 16 13 19 19 C 1.46984 * 120.00369 * 179.97438 * 17 16 13 20 20 C 1.35850 * 125.11968 * 179.72516 * 19 17 16 21 21 C 1.46097 * 106.06569 * 179.86106 * 20 19 17 22 22 C 1.39451 * 135.07415 * 180.08603 * 21 20 19 23 23 N 1.31677 * 120.07568 * 180.30118 * 22 21 20 24 24 C 1.32305 * 122.14099 * 0.02562 * 23 22 21 25 25 C 1.37756 * 121.58636 * 0.02562 * 24 23 22 26 26 C 1.39243 * 118.95298 * 359.97438 * 25 24 23 27 27 O 1.34281 * 134.37359 * 180.02562 * 26 25 24 28 28 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 30 30 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 31 31 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 32 32 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.47050 * 179.97438 * 15 13 2 34 34 H 1.08998 * 109.47150 * 300.00000 * 15 13 2 35 35 H 1.09000 * 109.47005 * 60.00407 * 15 13 2 36 36 H 0.96999 * 120.00147 * 334.99483 * 16 13 2 37 37 H 1.08003 * 126.96621 * 359.97438 * 20 19 17 38 38 H 1.07996 * 119.96066 * 0.33160 * 22 21 20 39 39 H 1.08003 * 119.20610 * 179.97438 * 24 23 22 40 40 H 1.07998 * 120.52135 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1544 -0.0060 2.3744 6 1 1.8976 1.0419 2.4228 7 6 2.6226 -0.6590 3.5063 8 7 2.9361 -1.9360 3.4471 9 14 2.8076 0.2746 5.1136 10 1 2.3910 1.6863 4.9169 11 1 1.9519 -0.3534 6.1523 12 1 4.2266 0.2330 5.5497 13 6 2.0400 -0.7213 -1.2492 14 1 3.1263 -0.6444 -1.2951 15 6 1.6352 -2.1955 -1.1879 16 7 1.4558 -0.1037 -2.4423 17 6 2.0912 -0.1938 -3.6275 18 8 3.1500 -0.7876 -3.7064 19 6 1.5048 0.4254 -4.8247 20 6 2.0565 0.4031 -6.0660 21 6 1.1334 1.1328 -6.9319 22 6 1.1041 1.4661 -8.2856 23 7 0.0976 2.1618 -8.7724 24 6 -0.9089 2.5673 -8.0155 25 6 -0.9592 2.2827 -6.6686 26 6 0.0767 1.5499 -6.0953 27 8 0.3401 1.1082 -4.8549 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 2.2491 -1.6318 1.1526 32 1 3.2629 -2.3923 4.2382 33 1 1.9982 -2.7093 -2.0781 34 1 2.0699 -2.6550 -0.3002 35 1 0.5489 -2.2724 -1.1421 36 1 0.6117 0.3701 -2.3794 37 1 2.9877 -0.0617 -6.3546 38 1 1.9077 1.1530 -8.9357 39 1 -1.7101 3.1358 -8.4643 40 1 -1.7894 2.6220 -6.0669 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755243939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:55 Heat of formation + Delta-G solvation = -1.673158 kcal Electronic energy + Delta-G solvation = -23773.379592 eV Core-core repulsion = 20168.384594 eV Total energy + Delta-G solvation = -3604.994998 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.84648 -41.08004 -39.95742 -38.53433 -35.73791 -34.11690 -33.72460 -32.75394 -31.51663 -30.52612 -29.83948 -26.43043 -26.12634 -24.80287 -24.37695 -23.01992 -21.97832 -20.79502 -19.84636 -19.33333 -19.05458 -17.73058 -17.22882 -16.85059 -16.74474 -16.59974 -16.08035 -15.86964 -15.52883 -15.42145 -15.21296 -14.75115 -14.47672 -14.43643 -14.28185 -13.98037 -13.55588 -13.14020 -13.01433 -12.84265 -12.69802 -12.64092 -12.10917 -12.08615 -11.72350 -11.66754 -11.52211 -11.50710 -10.98148 -10.79387 -10.57340 -10.32527 -9.51496 -9.04877 -7.94663 -5.23595 -0.69756 0.11512 0.59457 1.13741 1.48209 1.48806 1.58413 1.89632 1.91435 2.56929 2.67439 3.15580 3.31765 3.39293 3.47474 3.73594 3.77880 3.85161 3.93949 4.02879 4.13870 4.28297 4.29413 4.55763 4.61477 4.64687 4.66009 4.81276 4.83881 4.90845 4.95481 4.99605 5.17206 5.18971 5.27550 5.38183 5.52596 5.59060 5.68307 6.27568 6.29328 6.84936 6.86200 7.34527 8.07382 8.31101 9.28930 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.032633 B = 0.002629 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.822867 B =10647.322275 C =11073.161514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.166 3.834 3 H 0.049 0.951 4 N -0.732 5.732 5 C -0.237 4.237 6 H 0.077 0.923 7 C -0.075 4.075 8 N -0.968 5.968 9 Si 0.971 3.029 10 H -0.266 1.266 11 H -0.294 1.294 12 H -0.296 1.296 13 C 0.147 3.853 14 H 0.069 0.931 15 C -0.152 4.152 16 N -0.693 5.693 17 C 0.599 3.401 18 O -0.546 6.546 19 C -0.042 4.042 20 C -0.085 4.085 21 C -0.216 4.216 22 C 0.178 3.822 23 N -0.513 5.513 24 C 0.123 3.877 25 C -0.162 4.162 26 C 0.087 3.913 27 O -0.184 6.184 28 H 0.054 0.946 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.377 0.623 32 H 0.251 0.749 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.415 0.585 37 H 0.190 0.810 38 H 0.192 0.808 39 H 0.204 0.796 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.395 8.365 -24.505 27.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.057 3.943 3 H 0.067 0.933 4 N -0.375 5.375 5 C -0.369 4.369 6 H 0.095 0.905 7 C -0.267 4.267 8 N -0.619 5.619 9 Si 0.801 3.199 10 H -0.190 1.190 11 H -0.221 1.221 12 H -0.224 1.224 13 C 0.042 3.958 14 H 0.087 0.913 15 C -0.210 4.210 16 N -0.345 5.345 17 C 0.384 3.616 18 O -0.426 6.426 19 C -0.091 4.091 20 C -0.107 4.107 21 C -0.219 4.219 22 C 0.014 3.986 23 N -0.223 5.223 24 C -0.027 4.027 25 C -0.182 4.182 26 C 0.031 3.969 27 O -0.084 6.084 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.212 0.788 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.254 0.746 37 H 0.207 0.793 38 H 0.209 0.791 39 H 0.221 0.779 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -8.908 8.386 -25.002 27.834 hybrid contribution 0.181 -0.274 2.224 2.248 sum -8.727 8.112 -22.778 25.706 Atomic orbital electron populations 1.22378 0.96735 1.01750 1.01089 1.20510 0.93823 0.94965 0.85027 0.93338 1.42634 1.78589 1.10495 1.05770 1.19631 1.34827 0.94277 0.88161 0.90474 1.25529 1.02857 0.96906 1.01422 1.69817 1.52419 1.10207 1.29449 0.85104 0.76659 0.78239 0.79926 1.19008 1.22149 1.22362 1.21078 0.97899 0.93360 0.83443 0.91289 1.22057 1.02456 0.94861 1.01647 1.45988 1.25942 1.55407 1.07145 1.16808 0.83717 0.79346 0.81681 1.90890 1.22669 1.44167 1.84890 1.21853 0.87902 1.02889 0.96505 1.22966 1.00317 0.97881 0.89495 1.21098 0.97266 1.06001 0.97545 1.22901 0.95838 0.89883 0.89989 1.67912 1.02622 1.12312 1.39433 1.23260 0.96054 0.94673 0.88666 1.21452 0.98607 1.01377 0.96765 1.20381 0.97316 0.96911 0.82263 1.83945 1.36165 1.58717 1.29610 0.92746 0.93589 0.91018 0.78811 0.94047 0.92504 0.92321 0.90913 0.74609 0.79326 0.79131 0.77924 0.81021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.00 9.01 71.98 0.65 -4.35 16 2 C 0.17 6.16 2.93 44.99 0.13 6.30 16 3 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 4 N -0.73 -35.48 5.03 -322.94 -1.62 -37.10 16 5 C -0.24 -12.79 9.93 84.03 0.83 -11.95 16 6 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 7 C -0.07 -4.22 5.50 84.86 0.47 -3.76 16 8 N -0.97 -58.51 13.06 21.65 0.28 -58.22 16 9 Si 0.97 45.62 29.55 68.60 2.03 47.65 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 12 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 13 C 0.15 4.92 2.62 44.99 0.12 5.04 16 14 H 0.07 2.66 7.58 -2.39 -0.02 2.65 16 15 C -0.15 -4.97 9.00 71.98 0.65 -4.32 16 16 N -0.69 -18.81 4.98 -446.22 -2.22 -21.03 16 17 C 0.60 17.13 7.76 86.54 0.67 17.80 16 18 O -0.55 -19.07 16.49 -4.21 -0.07 -19.14 16 19 C -0.04 -1.00 7.07 24.01 0.17 -0.83 16 20 C -0.08 -1.71 10.80 23.76 0.26 -1.45 16 21 C -0.22 -3.94 6.43 -20.25 -0.13 -4.07 16 22 C 0.18 2.62 11.28 85.01 0.96 3.58 16 23 N -0.51 -7.89 10.34 -195.04 -2.02 -9.91 16 24 C 0.12 1.39 11.13 84.51 0.94 2.33 16 25 C -0.16 -2.07 10.13 22.40 0.23 -1.84 16 26 C 0.09 1.64 7.48 23.21 0.17 1.81 16 27 O -0.18 -3.99 10.26 -9.71 -0.10 -4.09 16 28 H 0.05 1.72 6.57 -2.38 -0.02 1.70 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.68 6.29 -2.39 -0.02 1.66 16 31 H 0.38 19.60 5.77 -92.71 -0.54 19.06 16 32 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.06 2.19 6.29 -2.39 -0.02 2.18 16 35 H 0.07 2.14 6.57 -2.39 -0.02 2.12 16 36 H 0.42 9.38 6.29 -92.71 -0.58 8.79 16 37 H 0.19 3.16 8.06 -2.91 -0.02 3.14 16 38 H 0.19 1.65 8.06 -2.91 -0.02 1.63 16 39 H 0.20 0.75 8.06 -2.91 -0.02 0.73 16 40 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -69.42 340.20 2.37 -67.06 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: -0.02 Total: 30.52 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 6.11 Total: 4.28 kcal Atomic # 7 Polarization: -120.69 SS G_CDS: -5.58 Total: -126.27 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.17 Total: -23.23 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -69.42 2.37 -67.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755243939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.383 kcal (2) G-P(sol) polarization free energy of solvation -69.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds