Wall clock time and date at job start Tue Mar 31 2020 08:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46563 * 2 1 4 4 H 1.08994 * 109.47903 * 54.99882 * 3 2 1 5 5 C 1.50704 * 109.47064 * 175.00148 * 3 2 1 6 6 H 1.07997 * 120.00423 * 119.99507 * 5 3 2 7 7 C 1.37877 * 119.99888 * 299.99884 * 5 3 2 8 8 N 1.31514 * 119.99816 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00115 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47044 * 90.00192 * 9 7 5 11 11 H 1.48499 * 109.47430 * 209.99830 * 9 7 5 12 12 H 1.48495 * 109.47104 * 330.00090 * 9 7 5 13 13 O 1.45206 * 109.47049 * 294.99683 * 3 2 1 14 14 C 1.34223 * 116.99719 * 90.00643 * 13 3 2 15 15 O 1.20822 * 120.00433 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99736 * 179.97438 * 14 13 3 17 17 N 1.46505 * 109.47084 * 179.97438 * 16 14 13 18 18 N 1.39830 * 125.38789 * 270.05308 * 17 16 14 19 19 C 1.30246 * 110.09198 * 180.30228 * 18 17 16 20 20 C 1.45853 * 107.65277 * 359.79430 * 19 18 17 21 21 C 1.40001 * 134.26092 * 179.97438 * 20 19 18 22 22 C 1.37019 * 118.16029 * 180.02562 * 21 20 19 23 23 C 1.50697 * 120.18005 * 179.97438 * 22 21 20 24 24 C 1.38810 * 119.64198 * 0.02562 * 22 21 20 25 25 N 1.31499 * 121.59081 * 0.02562 * 24 22 21 26 26 C 1.32764 * 121.47224 * 359.97438 * 25 24 22 27 27 H 1.08997 * 109.47319 * 300.00139 * 1 2 3 28 28 H 1.08997 * 109.47308 * 60.00804 * 1 2 3 29 29 H 1.09006 * 109.46590 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47319 * 239.99861 * 2 1 3 31 31 H 1.08996 * 109.46976 * 119.99626 * 2 1 3 32 32 H 0.96998 * 120.00040 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.47051 * 59.99784 * 16 14 13 34 34 H 1.08999 * 109.47403 * 299.99435 * 16 14 13 35 35 H 1.07993 * 126.17207 * 179.77534 * 19 18 17 36 36 H 1.07999 * 120.91955 * 0.03126 * 21 20 19 37 37 H 1.09000 * 109.47707 * 270.02747 * 23 22 21 38 38 H 1.09011 * 109.46684 * 30.02852 * 23 22 21 39 39 H 1.09001 * 109.47267 * 150.01997 * 23 22 21 40 40 H 1.07998 * 119.19954 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5418 1.4445 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8786 1.2279 8 7 3.4062 0.3377 2.1733 9 14 6.0049 0.8803 1.3811 10 1 6.4426 2.1133 2.0837 11 1 6.4391 -0.3106 2.1546 12 1 6.6130 0.8398 0.0270 13 8 1.6557 2.0916 -1.2408 14 6 0.4726 2.7253 -1.2560 15 8 -0.2194 2.7369 -0.2657 16 6 0.0073 3.4224 -2.5085 17 7 -1.3034 4.0320 -2.2699 18 7 -2.5370 3.4087 -2.4821 19 6 -3.5075 4.2230 -2.1799 20 6 -2.9103 5.4753 -1.7301 21 6 -3.4250 6.6982 -1.2834 22 6 -2.5393 7.6832 -0.9329 23 6 -3.0435 9.0175 -0.4466 24 6 -1.1750 7.4458 -1.0292 25 7 -0.7046 6.2927 -1.4514 26 6 -1.5141 5.3014 -1.8047 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8292 -0.0601 2.9502 33 1 -0.0712 2.6984 -3.3194 34 1 0.7243 4.1969 -2.7810 35 1 -4.5638 4.0095 -2.2501 36 1 -4.4906 6.8608 -1.2168 37 1 -3.1721 9.6888 -1.2956 38 1 -4.0003 8.8823 0.0580 39 1 -2.3230 9.4463 0.2498 40 1 -0.4833 8.2270 -0.7507 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772351840.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:09 Heat of formation + Delta-G solvation = 11.282749 kcal Electronic energy + Delta-G solvation = -24426.245618 eV Core-core repulsion = 20821.812431 eV Total energy + Delta-G solvation = -3604.433188 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.63542 -39.63356 -38.35646 -35.89457 -34.10398 -33.54303 -32.82349 -31.35844 -30.74710 -28.46906 -27.21513 -26.31075 -24.13878 -23.30739 -22.03581 -21.59743 -20.45552 -19.49925 -17.78461 -17.30565 -17.00005 -16.58480 -16.01302 -15.66279 -15.46503 -14.91121 -14.49692 -14.15177 -14.08640 -13.63882 -13.36820 -13.05101 -12.84681 -12.78136 -12.67018 -12.28302 -12.25093 -11.81485 -11.45814 -11.35245 -11.18564 -11.02819 -10.94483 -10.70247 -10.57866 -10.29241 -9.81811 -9.68244 -9.51351 -9.39969 -9.03255 -8.82221 -8.46793 -8.23257 -6.19000 -4.26397 0.71500 1.18465 1.98711 2.41444 2.90433 3.24549 3.29791 3.33628 3.54872 3.74593 4.11456 4.21757 4.32792 4.50943 4.63964 4.79109 5.01062 5.10973 5.12895 5.22766 5.30824 5.37941 5.43246 5.55187 5.63458 5.71447 6.08317 6.17297 6.22977 6.29409 6.43674 6.46007 6.72140 6.85869 6.95522 7.16045 7.22191 7.39676 7.60517 7.72307 7.86628 7.92674 8.13933 8.58071 8.85633 9.38651 10.87783 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.019841 B = 0.003595 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.900691 B = 7786.410688 C = 8578.153805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.224 3.776 4 H 0.046 0.954 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.912 3.088 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.353 6.353 14 C 0.437 3.563 15 O -0.501 6.501 16 C 0.148 3.852 17 N -0.375 5.375 18 N -0.224 5.224 19 C 0.081 3.919 20 C -0.223 4.223 21 C 0.003 3.997 22 C -0.188 4.188 23 C -0.100 4.100 24 C 0.172 3.828 25 N -0.495 5.495 26 C 0.322 3.678 27 H 0.051 0.949 28 H 0.031 0.969 29 H 0.033 0.967 30 H 0.042 0.958 31 H 0.109 0.891 32 H 0.266 0.734 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.201 0.799 36 H 0.138 0.862 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.840 13.492 -8.574 21.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.173 4.173 3 C 0.172 3.828 4 H 0.064 0.936 5 C -0.560 4.560 6 H 0.088 0.912 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.739 3.261 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.195 1.195 13 O -0.269 6.269 14 C 0.277 3.723 15 O -0.390 6.390 16 C 0.024 3.976 17 N -0.166 5.166 18 N -0.036 5.036 19 C -0.118 4.118 20 C -0.233 4.233 21 C -0.026 4.026 22 C -0.192 4.192 23 C -0.157 4.157 24 C 0.002 3.998 25 N -0.208 5.208 26 C 0.084 3.916 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.127 0.873 32 H 0.076 0.924 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.218 0.782 36 H 0.156 0.844 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.599 11.855 -8.617 19.327 hybrid contribution -0.121 0.641 0.732 0.981 sum -12.720 12.496 -7.884 19.497 Atomic orbital electron populations 1.21841 0.98320 0.98999 1.00683 1.22021 0.92618 0.99270 1.03416 1.20708 0.95054 0.88704 0.78377 0.93621 1.21039 0.89542 1.39046 1.06342 0.91240 1.24895 0.99323 0.94713 0.95031 1.69894 1.35433 1.37804 1.09428 0.86264 0.83763 0.77695 0.78373 1.20386 1.20939 1.19541 1.86460 1.33523 1.62391 1.44520 1.23375 0.81543 0.77773 0.89611 1.90649 1.55319 1.57712 1.35305 1.21024 0.80573 1.00078 0.95884 1.47652 1.04574 1.07623 1.56717 1.76740 0.88660 1.20103 1.18050 1.25008 0.99196 0.89428 0.98136 1.20472 0.93809 0.97313 1.11713 1.20591 1.00021 0.89707 0.92237 1.20383 0.94569 0.98126 1.06096 1.20602 1.01495 0.92673 1.00943 1.22647 0.93346 0.92147 0.91637 1.66751 1.38898 0.99974 1.15141 1.18920 0.90228 0.87535 0.94952 0.93034 0.94977 0.94768 0.93872 0.87291 0.92371 0.85186 0.84977 0.78221 0.84412 0.91304 0.91535 0.91269 0.81913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.56 37.16 0.32 -2.92 16 2 C -0.14 -3.44 5.49 -26.73 -0.15 -3.59 16 3 C 0.22 6.08 2.25 -27.88 -0.06 6.02 16 4 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 5 C -0.52 -14.78 8.90 -34.44 -0.31 -15.09 16 6 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.41 11.29 55.43 0.63 -24.78 16 9 Si 0.91 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 O -0.35 -8.51 9.81 -39.24 -0.38 -8.89 16 14 C 0.44 9.48 6.48 36.01 0.23 9.71 16 15 O -0.50 -12.41 13.57 -18.75 -0.25 -12.67 16 16 C 0.15 2.42 7.00 -5.19 -0.04 2.38 16 17 N -0.38 -6.34 3.13 -61.60 -0.19 -6.53 16 18 N -0.22 -3.52 12.40 31.85 0.39 -3.12 16 19 C 0.08 1.00 12.29 -15.18 -0.19 0.82 16 20 C -0.22 -3.00 6.38 -105.18 -0.67 -3.67 16 21 C 0.00 0.03 9.83 -39.36 -0.39 -0.36 16 22 C -0.19 -1.85 5.86 -104.85 -0.61 -2.46 16 23 C -0.10 -0.62 10.02 36.00 0.36 -0.26 16 24 C 0.17 2.05 10.82 -17.48 -0.19 1.86 16 25 N -0.49 -7.86 10.40 -12.34 -0.13 -7.99 16 26 C 0.32 5.28 7.97 -156.11 -1.24 4.04 16 27 H 0.05 1.25 7.80 -51.93 -0.40 0.85 16 28 H 0.03 0.72 6.06 -51.93 -0.31 0.40 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.11 3.00 5.95 -51.93 -0.31 2.69 16 32 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.13 1.75 8.14 -51.93 -0.42 1.33 16 34 H 0.13 1.90 8.14 -51.93 -0.42 1.47 16 35 H 0.20 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.35 8.09 -51.92 -0.42 -0.07 16 39 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 40 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 342.73 15.07 5.16 5.16 Total: -1.00 -34.98 342.73 -7.99 -42.97 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.17 Total: 1.52 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -3.03 Total: -1.88 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.70 Total: -42.43 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.64 Total: -21.56 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.98 -7.99 -42.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772351840.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.254 kcal (2) G-P(sol) polarization free energy of solvation -34.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds