Wall clock time and date at job start Tue Mar 31 2020 08:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46563 * 2 1 4 4 H 1.08994 * 109.47903 * 54.99882 * 3 2 1 5 5 C 1.50704 * 109.47064 * 175.00148 * 3 2 1 6 6 H 1.07997 * 120.00423 * 119.99507 * 5 3 2 7 7 C 1.37877 * 119.99888 * 299.99884 * 5 3 2 8 8 N 1.31514 * 119.99816 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00115 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47044 * 90.00192 * 9 7 5 11 11 H 1.48499 * 109.47430 * 209.99830 * 9 7 5 12 12 H 1.48495 * 109.47104 * 330.00090 * 9 7 5 13 13 O 1.45206 * 109.47049 * 294.99683 * 3 2 1 14 14 C 1.34223 * 116.99719 * 90.00643 * 13 3 2 15 15 O 1.20822 * 120.00433 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99736 * 179.97438 * 14 13 3 17 17 N 1.46505 * 109.47084 * 179.97438 * 16 14 13 18 18 N 1.39830 * 125.38789 * 270.05308 * 17 16 14 19 19 C 1.30246 * 110.09198 * 180.30228 * 18 17 16 20 20 C 1.45853 * 107.65277 * 359.79430 * 19 18 17 21 21 C 1.40001 * 134.26092 * 179.97438 * 20 19 18 22 22 C 1.37019 * 118.16029 * 180.02562 * 21 20 19 23 23 C 1.50697 * 120.18005 * 179.97438 * 22 21 20 24 24 C 1.38810 * 119.64198 * 0.02562 * 22 21 20 25 25 N 1.31499 * 121.59081 * 0.02562 * 24 22 21 26 26 C 1.32764 * 121.47224 * 359.97438 * 25 24 22 27 27 H 1.08997 * 109.47319 * 300.00139 * 1 2 3 28 28 H 1.08997 * 109.47308 * 60.00804 * 1 2 3 29 29 H 1.09006 * 109.46590 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47319 * 239.99861 * 2 1 3 31 31 H 1.08996 * 109.46976 * 119.99626 * 2 1 3 32 32 H 0.96998 * 120.00040 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.47051 * 59.99784 * 16 14 13 34 34 H 1.08999 * 109.47403 * 299.99435 * 16 14 13 35 35 H 1.07993 * 126.17207 * 179.77534 * 19 18 17 36 36 H 1.07999 * 120.91955 * 0.03126 * 21 20 19 37 37 H 1.09000 * 109.47707 * 270.02747 * 23 22 21 38 38 H 1.09011 * 109.46684 * 30.02852 * 23 22 21 39 39 H 1.09001 * 109.47267 * 150.01997 * 23 22 21 40 40 H 1.07998 * 119.19954 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5418 1.4445 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8786 1.2279 8 7 3.4062 0.3377 2.1733 9 14 6.0049 0.8803 1.3811 10 1 6.4426 2.1133 2.0837 11 1 6.4391 -0.3106 2.1546 12 1 6.6130 0.8398 0.0270 13 8 1.6557 2.0916 -1.2408 14 6 0.4726 2.7253 -1.2560 15 8 -0.2194 2.7369 -0.2657 16 6 0.0073 3.4224 -2.5085 17 7 -1.3034 4.0320 -2.2699 18 7 -2.5370 3.4087 -2.4821 19 6 -3.5075 4.2230 -2.1799 20 6 -2.9103 5.4753 -1.7301 21 6 -3.4250 6.6982 -1.2834 22 6 -2.5393 7.6832 -0.9329 23 6 -3.0435 9.0175 -0.4466 24 6 -1.1750 7.4458 -1.0292 25 7 -0.7046 6.2927 -1.4514 26 6 -1.5141 5.3014 -1.8047 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8292 -0.0601 2.9502 33 1 -0.0712 2.6984 -3.3194 34 1 0.7243 4.1969 -2.7810 35 1 -4.5638 4.0095 -2.2501 36 1 -4.4906 6.8608 -1.2168 37 1 -3.1721 9.6888 -1.2956 38 1 -4.0003 8.8823 0.0580 39 1 -2.3230 9.4463 0.2498 40 1 -0.4833 8.2270 -0.7507 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772351840.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:09 Heat of formation + Delta-G solvation = -10.083671 kcal Electronic energy + Delta-G solvation = -24427.172136 eV Core-core repulsion = 20821.812431 eV Total energy + Delta-G solvation = -3605.359705 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.65393 -41.40767 -39.34681 -37.77485 -35.59903 -35.10594 -33.91002 -33.36019 -31.67463 -29.87410 -28.96004 -27.24139 -25.32124 -25.06442 -23.42651 -22.65002 -21.93696 -21.27024 -19.18058 -18.92838 -18.45477 -17.96986 -17.41720 -17.27726 -16.85684 -16.51562 -15.94297 -15.27316 -15.14146 -14.81895 -14.80527 -14.40788 -14.21769 -14.08501 -13.53101 -13.45133 -13.37730 -13.35269 -13.15141 -13.13349 -12.85830 -12.84128 -12.63878 -12.16634 -12.02322 -11.86366 -11.77441 -11.49320 -11.19861 -10.89218 -10.58657 -10.46952 -10.08686 -9.21118 -8.31379 -6.49215 -0.21167 0.26545 0.89380 1.18911 1.39336 1.41568 1.43516 1.53703 2.00112 2.38201 2.75705 2.98079 3.15512 3.24888 3.65086 3.77880 3.80392 4.01030 4.01647 4.08315 4.28105 4.31188 4.38489 4.40940 4.47384 4.65330 4.74370 4.85999 4.97645 4.99055 5.13123 5.21493 5.27129 5.33541 5.36228 5.45957 5.54745 5.59947 5.77684 5.89575 6.03907 6.38030 6.54810 6.84437 6.91191 7.21923 8.75571 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.019841 B = 0.003595 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.900691 B = 7786.410688 C = 8578.153805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.128 4.128 3 C 0.228 3.772 4 H 0.000 1.000 5 C -0.552 4.552 6 H 0.068 0.932 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.984 3.016 10 H -0.273 1.273 11 H -0.274 1.274 12 H -0.261 1.261 13 O -0.359 6.359 14 C 0.433 3.567 15 O -0.536 6.536 16 C 0.159 3.841 17 N -0.396 5.396 18 N -0.265 5.265 19 C 0.101 3.899 20 C -0.237 4.237 21 C 0.008 3.992 22 C -0.181 4.181 23 C -0.096 4.096 24 C 0.158 3.842 25 N -0.539 5.539 26 C 0.283 3.717 27 H 0.028 0.972 28 H 0.033 0.967 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.271 0.729 33 H 0.159 0.841 34 H 0.148 0.852 35 H 0.248 0.752 36 H 0.181 0.819 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.069 14.907 -9.234 23.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.166 4.166 3 C 0.175 3.825 4 H 0.017 0.983 5 C -0.589 4.589 6 H 0.086 0.914 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.807 3.193 10 H -0.198 1.198 11 H -0.199 1.199 12 H -0.185 1.185 13 O -0.275 6.275 14 C 0.275 3.725 15 O -0.426 6.426 16 C 0.036 3.964 17 N -0.187 5.187 18 N -0.076 5.076 19 C -0.098 4.098 20 C -0.247 4.247 21 C -0.020 4.020 22 C -0.184 4.184 23 C -0.153 4.153 24 C -0.009 4.009 25 N -0.253 5.253 26 C 0.046 3.954 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.176 0.824 34 H 0.165 0.835 35 H 0.264 0.736 36 H 0.198 0.802 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -13.853 13.302 -9.289 21.335 hybrid contribution 0.120 0.379 0.993 1.069 sum -13.734 13.682 -8.296 21.086 Atomic orbital electron populations 1.21668 0.96494 1.00500 0.99621 1.21862 0.94159 0.97988 1.02581 1.20385 0.94693 0.89182 0.78205 0.98258 1.21336 0.90251 1.40187 1.07141 0.91390 1.25854 1.04527 0.93717 0.94231 1.70021 1.37596 1.37865 1.09833 0.85165 0.77300 0.78039 0.78815 1.19816 1.19877 1.18514 1.86448 1.35228 1.62928 1.42849 1.24548 0.80082 0.76747 0.91127 1.90618 1.55964 1.58884 1.37166 1.21080 0.81537 1.00613 0.93195 1.47698 1.04629 1.08116 1.58260 1.76690 0.88927 1.21478 1.20457 1.25854 1.00591 0.88237 0.95116 1.20863 0.92758 0.98884 1.12179 1.21125 1.02222 0.88211 0.90444 1.20826 0.93597 0.99677 1.04348 1.20685 1.02272 0.90581 1.01778 1.23261 0.95312 0.91568 0.90794 1.66714 1.40331 1.01271 1.17008 1.19364 0.91980 0.87724 0.96289 0.95290 0.94776 0.91811 0.93114 0.89436 0.91973 0.82377 0.83478 0.73584 0.80202 0.89620 0.89942 0.90540 0.79654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.89 8.56 71.98 0.62 -5.27 16 2 C -0.13 -6.71 5.49 30.59 0.17 -6.54 16 3 C 0.23 13.00 2.25 29.85 0.07 13.06 16 4 H 0.00 -0.02 7.16 -2.39 -0.02 -0.04 16 5 C -0.55 -32.22 8.90 25.60 0.23 -31.99 16 6 H 0.07 3.88 7.81 -2.91 -0.02 3.85 16 7 C 0.02 0.93 5.29 84.65 0.45 1.38 16 8 N -0.92 -53.68 11.29 21.45 0.24 -53.44 16 9 Si 0.98 43.70 29.54 68.60 2.03 45.72 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 12 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 13 O -0.36 -18.00 9.81 -51.35 -0.50 -18.50 16 14 C 0.43 19.57 6.48 71.24 0.46 20.04 16 15 O -0.54 -27.95 13.57 21.97 0.30 -27.65 16 16 C 0.16 5.35 7.00 85.63 0.60 5.95 16 17 N -0.40 -13.61 3.13 -348.80 -1.09 -14.70 16 18 N -0.26 -8.23 12.40 -53.15 -0.66 -8.89 16 19 C 0.10 2.32 12.29 86.90 1.07 3.38 16 20 C -0.24 -6.06 6.38 -20.23 -0.13 -6.18 16 21 C 0.01 0.14 9.83 22.41 0.22 0.36 16 22 C -0.18 -3.12 5.86 -20.01 -0.12 -3.23 16 23 C -0.10 -0.83 10.02 71.23 0.71 -0.12 16 24 C 0.16 3.66 10.82 84.88 0.92 4.58 16 25 N -0.54 -17.48 10.40 -192.96 -2.01 -19.49 16 26 C 0.28 9.42 7.97 134.12 1.07 10.49 16 27 H 0.03 1.45 7.80 -2.39 -0.02 1.43 16 28 H 0.03 1.55 6.06 -2.39 -0.01 1.54 16 29 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 30 H 0.05 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.09 4.98 5.95 -2.39 -0.01 4.97 16 32 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 33 H 0.16 4.26 8.14 -2.39 -0.02 4.24 16 34 H 0.15 4.37 8.14 -2.39 -0.02 4.35 16 35 H 0.25 2.78 8.06 -2.91 -0.02 2.76 16 36 H 0.18 1.54 8.06 -2.91 -0.02 1.51 16 37 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.08 0.51 8.09 -2.38 -0.02 0.49 16 39 H 0.08 0.59 8.09 -2.39 -0.02 0.57 16 40 H 0.19 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -80.89 342.73 5.70 -75.20 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 1.06 Total: 15.86 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 6.33 Total: 5.89 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -3.51 Total: -96.52 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -0.21 Total: -46.15 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -80.89 5.70 -75.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772351840.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.116 kcal (2) G-P(sol) polarization free energy of solvation -80.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds