Wall clock time and date at job start Tue Mar 31 2020 08:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.86775 * 2 1 4 4 C 1.54319 * 109.88104 * 121.17831 * 2 1 3 5 5 C 1.55160 * 102.94087 * 141.61271 * 4 2 1 6 6 H 1.08999 * 111.03637 * 206.41037 * 5 4 2 7 7 N 1.46499 * 111.00594 * 82.56674 * 5 4 2 8 8 C 1.36934 * 120.00008 * 161.35118 * 7 5 4 9 9 H 1.07996 * 119.99979 * 359.97438 * 8 7 5 10 10 C 1.38808 * 120.00024 * 179.72870 * 8 7 5 11 11 N 1.31621 * 120.00161 * 180.27436 * 10 8 7 12 12 Si 1.86802 * 120.00254 * 0.27503 * 10 8 7 13 13 H 1.48503 * 109.47388 * 89.99736 * 12 10 8 14 14 H 1.48498 * 109.47532 * 210.00243 * 12 10 8 15 15 H 1.48508 * 109.46906 * 330.00111 * 12 10 8 16 16 C 1.54914 * 101.58103 * 324.49700 * 5 4 2 17 17 N 1.47023 * 109.87985 * 238.99249 * 2 1 3 18 18 C 1.34768 * 125.65356 * 61.60206 * 17 2 1 19 19 O 1.21713 * 120.00366 * 358.74371 * 18 17 2 20 20 C 1.46601 * 120.00133 * 178.74493 * 18 17 2 21 21 C 1.41161 * 126.56084 * 8.29350 * 20 18 17 22 22 N 1.30523 * 108.27406 * 179.97438 * 21 20 18 23 23 N 1.39989 * 109.36911 * 359.97438 * 22 21 20 24 24 C 1.38447 * 143.84776 * 179.97438 * 23 22 21 25 25 C 1.33081 * 108.41941 * 179.35700 * 24 23 22 26 26 N 1.38057 * 108.13705 * 0.48859 * 25 24 23 27 27 H 0.96999 * 126.16383 * 179.58069 * 26 25 24 28 28 C 1.35014 * 108.27349 * 359.75312 * 23 22 21 29 29 H 1.09000 * 109.46967 * 179.55689 * 1 2 3 30 30 H 1.09000 * 109.47134 * 299.55837 * 1 2 3 31 31 H 1.09000 * 109.47514 * 59.56022 * 1 2 3 32 32 H 1.08993 * 110.72358 * 23.24696 * 4 2 1 33 33 H 1.09002 * 110.71698 * 259.96870 * 4 2 1 34 34 H 0.97001 * 120.00199 * 341.35282 * 7 5 4 35 35 H 0.97005 * 120.00077 * 180.02562 * 11 10 8 36 36 H 1.08999 * 110.36887 * 155.84890 * 16 5 4 37 37 H 1.08993 * 110.36431 * 278.06270 * 16 5 4 38 38 H 1.08000 * 125.86376 * 0.02562 * 21 20 18 39 39 H 1.08000 * 125.79063 * 359.97438 * 24 23 22 40 40 H 1.08005 * 125.93467 * 180.09117 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0548 -0.7513 1.2416 5 6 3.2876 -1.5152 0.6902 6 1 3.4858 -2.4128 1.2759 7 7 4.4674 -0.6477 0.6483 8 6 5.7188 -1.1973 0.5655 9 1 5.8361 -2.2703 0.5314 10 6 6.8363 -0.3752 0.5201 11 7 8.0389 -0.9033 0.4351 12 14 6.6336 1.4808 0.5799 13 1 6.6629 1.9369 1.9928 14 1 7.7414 2.1243 -0.1710 15 1 5.3350 1.8569 -0.0348 16 6 2.8145 -1.8783 -0.7396 17 7 2.0300 -0.7123 -1.1850 18 6 1.8073 -0.3584 -2.4662 19 8 1.1218 0.6152 -2.7184 20 6 2.3908 -1.1461 -3.5563 21 6 3.0640 -2.3809 -3.4345 22 7 3.4346 -2.7643 -4.6258 23 7 3.0263 -1.8125 -5.5677 24 6 3.0301 -1.5018 -6.9169 25 6 2.3902 -0.3470 -7.0843 26 7 1.9792 0.1002 -5.8445 27 1 1.4939 0.9203 -5.6638 28 6 2.3809 -0.8217 -4.9161 29 1 -0.3633 -1.0276 -0.0079 30 1 -0.3633 0.5070 0.8939 31 1 -0.3634 0.5206 -0.8860 32 1 1.3051 -1.4482 1.6161 33 1 2.3529 -0.0488 2.0199 34 1 4.3621 0.3161 0.6793 35 1 8.8199 -0.3288 0.4038 36 1 3.6716 -2.0317 -1.3953 37 1 2.1903 -2.7715 -0.7171 38 1 3.2413 -2.9168 -2.5137 39 1 3.4686 -2.1004 -7.7017 40 1 2.2267 0.1564 -8.0257 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989717543.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:59 Heat of formation + Delta-G solvation = 134.808411 kcal Electronic energy + Delta-G solvation = -25227.938952 eV Core-core repulsion = 21661.154990 eV Total energy + Delta-G solvation = -3566.783962 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.144 amu Computer time = 3.27 seconds Orbital eigenvalues (eV) -43.06408 -39.79213 -38.00965 -37.12406 -34.02876 -32.86203 -31.57560 -31.40469 -29.63044 -28.91919 -28.27571 -25.69070 -23.72458 -23.09023 -22.48368 -21.36927 -21.15559 -19.91617 -19.10992 -17.74158 -17.42750 -16.47639 -16.19797 -15.82031 -15.45334 -14.87175 -14.66532 -14.40495 -14.08817 -13.80982 -13.73391 -13.55677 -12.95337 -12.75155 -12.65870 -12.56238 -12.25015 -11.88619 -11.85337 -11.34609 -10.99328 -10.81833 -10.76417 -10.63410 -10.43620 -10.32427 -10.04394 -9.61267 -9.44785 -9.14780 -9.00208 -8.23400 -7.57075 -7.28770 -5.79902 -3.16134 1.56589 1.89704 2.03191 2.51618 2.76882 3.37455 3.42440 3.43114 3.45591 3.82248 4.35736 4.57874 4.67010 4.80720 4.88339 5.09310 5.16876 5.20651 5.30300 5.36354 5.52352 5.56781 5.60782 5.64088 5.68370 5.79356 5.84282 5.98962 6.08009 6.15452 6.35936 6.37826 6.49354 6.56765 6.63555 6.83896 6.88954 7.03319 7.77425 7.94859 8.04145 8.39071 8.69100 9.16722 9.89668 10.08224 11.37805 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.012621 B = 0.005533 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.973660 B = 5059.089794 C = 6137.016802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.140 3.860 3 H 0.068 0.932 4 C -0.140 4.140 5 C 0.174 3.826 6 H 0.080 0.920 7 N -0.736 5.736 8 C -0.248 4.248 9 H 0.094 0.906 10 C 0.011 3.989 11 N -0.930 5.930 12 Si 0.879 3.121 13 H -0.283 1.283 14 H -0.292 1.292 15 H -0.277 1.277 16 C 0.057 3.943 17 N -0.597 5.597 18 C 0.619 3.381 19 O -0.580 6.580 20 C -0.325 4.325 21 C 0.120 3.880 22 N -0.302 5.302 23 N -0.309 5.309 24 C 0.004 3.996 25 C 0.022 3.978 26 N -0.575 5.575 27 H 0.442 0.558 28 C 0.317 3.683 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.363 0.637 35 H 0.260 0.740 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.214 0.786 39 H 0.191 0.809 40 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.637 -0.290 -11.163 19.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.037 3.963 3 H 0.087 0.913 4 C -0.179 4.179 5 C 0.062 3.938 6 H 0.098 0.902 7 N -0.378 5.378 8 C -0.377 4.377 9 H 0.112 0.888 10 C -0.186 4.186 11 N -0.577 5.577 12 Si 0.709 3.291 13 H -0.210 1.210 14 H -0.218 1.218 15 H -0.203 1.203 16 C -0.069 4.069 17 N -0.329 5.329 18 C 0.412 3.588 19 O -0.462 6.462 20 C -0.345 4.345 21 C -0.062 4.062 22 N -0.123 5.123 23 N -0.078 5.078 24 C -0.123 4.123 25 C -0.106 4.106 26 N -0.188 5.188 27 H 0.284 0.716 28 C 0.082 3.918 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.196 0.804 35 H 0.070 0.930 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.230 0.770 39 H 0.208 0.792 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -15.120 -0.913 -12.078 19.374 hybrid contribution -0.440 2.400 0.333 2.462 sum -15.560 1.487 -11.745 19.552 Atomic orbital electron populations 1.22132 0.95365 1.01867 1.02324 1.21433 0.93727 0.96380 0.84786 0.91350 1.23069 0.98329 1.00088 0.96376 1.21315 0.86118 0.94400 0.91954 0.90179 1.42698 1.01991 1.03983 1.89114 1.19044 0.81392 0.93937 1.43376 0.88844 1.24636 0.95152 0.97150 1.01631 1.69695 0.97092 1.34081 1.56794 0.86631 0.77116 0.87566 0.77759 1.20971 1.21807 1.20284 1.23716 0.94942 0.87491 1.00781 1.48033 1.52023 1.28680 1.04122 1.16435 0.79023 0.82816 0.80572 1.90679 1.42160 1.29545 1.83850 1.18379 1.24541 1.03196 0.88361 1.24861 0.91643 0.93272 0.96470 1.77547 1.27745 1.10600 0.96429 1.47106 1.38636 1.15974 1.06102 1.21564 1.08925 0.98969 0.82798 1.22226 1.02398 0.96161 0.89832 1.41521 1.51221 1.21951 1.04073 0.71624 1.19183 0.95661 0.86133 0.90864 0.92735 0.92223 0.91525 0.90205 0.89970 0.80441 0.93026 0.88898 0.92026 0.76963 0.79193 0.78023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.10 37.16 0.34 -1.82 16 2 C 0.14 2.21 3.46 -66.95 -0.23 1.98 16 3 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 4 C -0.14 -2.00 6.05 -24.90 -0.15 -2.15 16 5 C 0.17 3.02 3.69 -65.78 -0.24 2.77 16 6 H 0.08 1.34 8.13 -51.93 -0.42 0.91 16 7 N -0.74 -16.55 5.07 -51.35 -0.26 -16.81 16 8 C -0.25 -6.67 10.47 -15.06 -0.16 -6.83 16 9 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 10 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 11 N -0.93 -28.80 13.97 55.49 0.78 -28.03 16 12 Si 0.88 22.31 27.74 -169.99 -4.72 17.60 16 13 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 14 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 15 H -0.28 -6.84 6.51 56.52 0.37 -6.47 16 16 C 0.06 0.91 4.95 -2.52 -0.01 0.90 16 17 N -0.60 -10.32 3.07 -164.57 -0.50 -10.82 16 18 C 0.62 11.61 7.62 -12.89 -0.10 11.51 16 19 O -0.58 -11.72 15.91 5.18 0.08 -11.64 16 20 C -0.32 -5.72 6.09 -104.83 -0.64 -6.36 16 21 C 0.12 2.01 10.27 -17.00 -0.17 1.84 16 22 N -0.30 -5.19 12.61 30.85 0.39 -4.80 16 23 N -0.31 -4.69 4.67 -11.88 -0.06 -4.75 16 24 C 0.00 0.04 11.91 -16.35 -0.19 -0.16 16 25 C 0.02 0.17 11.92 -16.54 -0.20 -0.03 16 26 N -0.58 -6.45 6.24 -11.98 -0.07 -6.52 16 27 H 0.44 4.22 8.96 -40.82 -0.37 3.85 16 28 C 0.32 4.99 8.39 -154.52 -1.30 3.69 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.04 6.84 -51.93 -0.36 0.68 16 32 H 0.08 0.93 7.85 -51.93 -0.41 0.53 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.36 8.37 5.67 -40.82 -0.23 8.13 16 35 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 36 H 0.09 1.67 5.27 -51.93 -0.27 1.40 16 37 H 0.06 0.81 8.02 -51.93 -0.42 0.40 16 38 H 0.21 3.14 4.78 -52.49 -0.25 2.89 16 39 H 0.19 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.20 0.48 8.06 -52.48 -0.42 0.06 16 LS Contribution 329.98 15.07 4.97 4.97 Total: -1.00 -36.82 329.98 -7.39 -44.22 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -4.85 Total: 11.03 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -3.15 Total: 5.56 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: 0.27 Total: -71.74 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.08 Total: -11.64 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.72 Total: 17.60 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -36.82 -7.39 -44.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989717543.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.027 kcal (2) G-P(sol) polarization free energy of solvation -36.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.28 seconds