Wall clock time and date at job start Tue Mar 31 2020 09:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46899 * 110.99714 * 2 1 4 4 C 1.46897 * 111.00086 * 123.95439 * 2 1 3 5 5 C 1.53009 * 109.46999 * 170.00064 * 4 2 1 6 6 N 1.46499 * 109.46768 * 180.02562 * 5 4 2 7 7 C 1.34866 * 125.89936 * 125.00210 * 6 5 4 8 8 C 1.36404 * 107.60893 * 179.97438 * 7 6 5 9 9 C 1.48510 * 126.21663 * 179.97438 * 8 7 6 10 10 C 1.39526 * 120.00936 * 310.01943 * 9 8 7 11 11 C 1.38493 * 120.42438 * 179.97438 * 10 9 8 12 12 C 1.37643 * 120.44679 * 359.74432 * 11 10 9 13 13 C 1.40770 * 119.99828 * 0.51200 * 12 11 10 14 14 C 1.41324 * 120.20413 * 179.76467 * 13 12 11 15 15 H 1.07998 * 119.99980 * 204.49570 * 14 13 12 16 16 C 1.39922 * 119.99886 * 24.77790 * 14 13 12 17 17 N 1.30853 * 120.00383 * 17.53161 * 16 14 13 18 18 Si 1.86803 * 119.99840 * 197.52921 * 16 14 13 19 19 H 1.48502 * 109.47096 * 60.00115 * 18 16 14 20 20 H 1.48499 * 109.47304 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47396 * 300.00407 * 18 16 14 22 22 C 1.39010 * 120.00699 * 130.00156 * 9 8 7 23 23 F 1.35097 * 120.22126 * 0.04151 * 22 9 8 24 24 C 1.40831 * 107.56517 * 0.22834 * 8 7 6 25 25 N 1.30680 * 108.10624 * 359.61212 * 24 8 7 26 26 H 1.09004 * 109.47488 * 296.04347 * 1 2 3 27 27 H 1.08998 * 109.47767 * 56.04400 * 1 2 3 28 28 H 1.09007 * 109.47469 * 176.04340 * 1 2 3 29 29 H 1.09007 * 109.46864 * 183.95422 * 3 2 1 30 30 H 1.08998 * 109.47408 * 303.95655 * 3 2 1 31 31 H 1.09000 * 109.47022 * 63.95696 * 3 2 1 32 32 H 1.08999 * 109.47009 * 50.00656 * 4 2 1 33 33 H 1.08991 * 109.47519 * 290.00190 * 4 2 1 34 34 H 1.08990 * 109.46845 * 60.00140 * 5 4 2 35 35 H 1.08999 * 109.46876 * 300.00134 * 5 4 2 36 36 H 1.08004 * 126.19592 * 359.94040 * 7 6 5 37 37 H 1.08001 * 119.78582 * 359.96060 * 10 9 8 38 38 H 1.08002 * 119.77811 * 179.97438 * 11 10 9 39 39 H 1.08000 * 120.00103 * 180.27811 * 12 11 10 40 40 H 0.97001 * 119.99989 * 179.97438 * 17 16 14 41 41 H 1.08001 * 125.94310 * 179.75517 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5045 -0.9553 0.9702 6 7 4.0293 -1.7197 2.1044 7 6 4.7438 -2.8609 2.0261 8 6 5.0394 -3.2509 3.2994 9 6 5.8125 -4.4571 3.6905 10 6 5.4803 -5.7025 3.1563 11 6 6.1959 -6.8328 3.5146 12 6 7.2473 -6.7416 4.3982 13 6 7.5949 -5.4951 4.9524 14 6 8.6705 -5.3974 5.8639 15 1 8.7035 -4.5853 6.5751 16 6 9.6956 -6.3494 5.8409 17 7 9.8550 -7.1142 4.7912 18 14 10.8369 -6.5285 7.3089 19 1 10.0432 -6.8850 8.5123 20 1 11.8296 -7.5988 7.0365 21 1 11.5447 -5.2447 7.5453 22 6 6.8677 -4.3454 4.5885 23 9 7.1932 -3.1420 5.1090 24 6 4.4731 -2.3052 4.1758 25 7 3.8765 -1.3914 3.4569 26 1 -0.3634 0.4512 0.9233 27 1 -0.3634 0.5740 -0.8524 28 1 -0.3634 -1.0253 -0.0709 29 1 3.0827 1.3432 -0.0709 30 1 1.5896 1.9164 -0.8524 31 1 1.7043 1.8723 0.9233 32 1 1.5090 -1.7407 1.1755 33 1 1.7975 -0.2249 2.0627 34 1 3.9908 0.0193 0.9323 35 1 3.7023 -1.4965 0.0450 36 1 5.0296 -3.3736 1.1195 37 1 4.6597 -5.7856 2.4591 38 1 5.9294 -7.7917 3.0951 39 1 7.8033 -7.6270 4.6692 40 1 10.5659 -7.7739 4.7752 41 1 4.5251 -2.3295 5.2543 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206347708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:28:45 Heat of formation + Delta-G solvation = 37.818431 kcal Electronic energy + Delta-G solvation = -23558.450815 eV Core-core repulsion = 19967.541091 eV Total energy + Delta-G solvation = -3590.909725 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.08344 -42.10734 -39.04811 -38.60909 -35.76259 -34.48699 -32.49877 -31.35503 -30.58975 -28.68665 -28.51916 -27.17649 -25.53031 -23.49121 -22.86433 -22.35831 -21.40746 -21.05041 -19.13079 -18.06511 -17.72891 -17.09761 -16.88131 -16.36722 -16.25497 -16.03645 -15.80468 -15.67664 -15.29902 -14.86170 -14.58095 -14.50519 -14.21334 -13.85206 -13.67324 -13.40810 -13.37223 -13.07482 -12.95085 -12.76234 -12.68245 -12.57635 -12.50876 -12.19152 -12.14318 -11.88233 -11.55066 -11.32612 -11.05164 -10.38163 -9.88028 -9.47570 -9.29919 -8.77372 -8.60467 -6.37218 0.66209 0.89666 1.01418 1.37913 1.48344 1.50677 1.52124 1.93425 2.20760 2.70194 2.94007 3.51054 3.62694 3.77579 3.99323 4.03248 4.12424 4.22061 4.28490 4.35301 4.44680 4.49528 4.58023 4.62286 4.70969 4.77409 4.83498 4.88951 4.94150 4.98058 5.00820 5.04033 5.24117 5.37512 5.53871 5.72970 5.83807 5.85127 5.93838 6.08465 6.11256 6.12503 6.25681 6.62078 6.69064 6.82421 6.94971 8.29441 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.035814 B = 0.002748 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.626085 B =10185.482663 C =10617.937625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.549 5.549 3 C 0.015 3.985 4 C 0.054 3.946 5 C 0.136 3.864 6 N -0.368 5.368 7 C 0.079 3.921 8 C -0.207 4.207 9 C -0.013 4.013 10 C -0.196 4.196 11 C -0.106 4.106 12 C -0.169 4.169 13 C 0.057 3.943 14 C -0.498 4.498 15 H 0.066 0.934 16 C 0.040 3.960 17 N -0.817 5.817 18 Si 0.981 3.019 19 H -0.260 1.260 20 H -0.260 1.260 21 H -0.265 1.265 22 C -0.047 4.047 23 F -0.169 7.169 24 C 0.056 3.944 25 N -0.318 5.318 26 H 0.023 0.977 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.023 0.977 32 H 0.076 0.924 33 H 0.032 0.968 34 H 0.089 0.911 35 H 0.128 0.872 36 H 0.206 0.794 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.112 0.888 40 H 0.292 0.708 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.864 8.538 -10.187 18.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.273 5.273 3 C -0.132 4.132 4 C -0.075 4.075 5 C 0.016 3.984 6 N -0.151 5.151 7 C -0.067 4.067 8 C -0.218 4.218 9 C -0.016 4.016 10 C -0.216 4.216 11 C -0.125 4.125 12 C -0.189 4.189 13 C 0.054 3.946 14 C -0.527 4.527 15 H 0.085 0.915 16 C -0.176 4.176 17 N -0.442 5.442 18 Si 0.802 3.198 19 H -0.184 1.184 20 H -0.184 1.184 21 H -0.190 1.190 22 C -0.067 4.067 23 F -0.148 7.148 24 C -0.130 4.130 25 N -0.140 5.140 26 H 0.042 0.958 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.041 0.959 32 H 0.094 0.906 33 H 0.050 0.950 34 H 0.108 0.892 35 H 0.146 0.854 36 H 0.223 0.777 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.130 0.870 40 H 0.103 0.897 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -13.296 9.372 -10.833 19.544 hybrid contribution 1.043 -0.241 1.777 2.075 sum -12.253 9.131 -9.056 17.763 Atomic orbital electron populations 1.22446 0.85778 1.03003 1.01189 1.61971 1.09275 1.14648 1.41448 1.22567 1.01392 0.88094 1.01195 1.22182 0.93982 0.99164 0.92219 1.21895 0.94163 0.97211 0.85133 1.48610 1.41779 1.19421 1.05252 1.22875 0.95511 0.88886 0.99459 1.18952 1.09837 0.99861 0.93131 1.17858 0.93657 0.92936 0.97105 1.20624 1.03849 0.90553 1.06525 1.20995 0.95320 0.98434 0.97718 1.21198 0.99020 0.96535 1.02134 1.17908 0.92715 0.90902 0.93070 1.19603 1.05559 1.10887 1.16644 0.91544 1.26661 0.98813 0.93172 0.98934 1.69836 1.29217 1.17309 1.27887 0.85267 0.77403 0.79090 0.78067 1.18394 1.18424 1.18964 1.18172 1.03582 0.79935 1.04999 1.91218 1.93016 1.44138 1.86445 1.23979 0.96466 0.92181 1.00373 1.77066 1.25539 1.23736 0.87647 0.95793 0.89535 0.90942 0.90719 0.89584 0.95873 0.90583 0.94970 0.89250 0.85363 0.77708 0.85067 0.85534 0.86988 0.89731 0.80611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.57 127.69 1.22 1.52 16 2 N -0.55 -8.46 5.02 -948.85 -4.76 -13.22 16 3 C 0.02 0.20 9.32 127.69 1.19 1.39 16 4 C 0.05 1.01 5.14 86.31 0.44 1.45 16 5 C 0.14 2.62 6.43 86.38 0.56 3.17 16 6 N -0.37 -10.35 3.67 -347.21 -1.27 -11.62 16 7 C 0.08 2.40 11.31 83.80 0.95 3.34 16 8 C -0.21 -7.90 5.35 -20.33 -0.11 -8.01 16 9 C -0.01 -0.60 5.75 -20.04 -0.12 -0.71 16 10 C -0.20 -7.98 9.70 22.64 0.22 -7.76 16 11 C -0.11 -4.60 10.01 22.19 0.22 -4.38 16 12 C -0.17 -8.66 8.69 22.75 0.20 -8.46 16 13 C 0.06 3.15 5.57 -21.27 -0.12 3.03 16 14 C -0.50 -27.96 8.78 23.44 0.21 -27.76 16 15 H 0.07 3.76 7.74 -2.91 -0.02 3.74 16 16 C 0.04 2.04 5.14 85.25 0.44 2.48 16 17 N -0.82 -42.16 10.95 21.82 0.24 -41.92 16 18 Si 0.98 38.85 29.59 68.60 2.03 40.88 16 19 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 20 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 21 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 22 C -0.05 -2.44 7.25 23.09 0.17 -2.27 16 23 F -0.17 -9.01 15.82 44.97 0.71 -8.30 16 24 C 0.06 2.09 11.43 85.50 0.98 3.06 16 25 N -0.32 -10.90 12.38 -56.46 -0.70 -11.60 16 26 H 0.02 0.32 8.14 -2.38 -0.02 0.30 16 27 H 0.09 0.83 8.12 -2.39 -0.02 0.81 16 28 H 0.07 0.89 8.12 -2.38 -0.02 0.87 16 29 H 0.07 0.92 6.47 -2.38 -0.02 0.90 16 30 H 0.09 0.86 8.12 -2.39 -0.02 0.84 16 31 H 0.02 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.08 1.50 8.06 -2.39 -0.02 1.48 16 33 H 0.03 0.73 8.12 -2.39 -0.02 0.71 16 34 H 0.09 1.62 6.55 -2.39 -0.02 1.60 16 35 H 0.13 1.84 8.07 -2.39 -0.02 1.83 16 36 H 0.21 4.70 8.06 -2.91 -0.02 4.68 16 37 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 38 H 0.13 4.58 8.06 -2.91 -0.02 4.55 16 39 H 0.11 5.91 6.16 -2.91 -0.02 5.89 16 40 H 0.29 13.49 8.30 -92.71 -0.77 12.72 16 41 H 0.18 6.47 8.06 -2.91 -0.02 6.44 16 Total: -1.00 -65.19 350.53 3.72 -61.47 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 1.03 Total: 24.20 kcal Atomic # 6 Polarization: -46.33 SS G_CDS: 6.44 Total: -39.89 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -6.50 Total: -78.36 kcal Atomic # 9 Polarization: -9.01 SS G_CDS: 0.71 Total: -8.30 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -65.19 3.72 -61.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206347708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.292 kcal (2) G-P(sol) polarization free energy of solvation -65.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds