Wall clock time and date at job start Tue Mar 31 2020 08:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47225 * 2 1 4 4 C 1.53001 * 109.47409 * 120.00421 * 2 1 3 5 5 N 1.46505 * 109.46944 * 174.99977 * 4 2 1 6 6 C 1.46494 * 120.00048 * 269.99605 * 5 4 2 7 7 C 1.36942 * 119.99867 * 89.99893 * 5 4 2 8 8 H 1.08000 * 120.00061 * 23.64789 * 7 5 4 9 9 C 1.38811 * 119.99862 * 203.63776 * 7 5 4 10 10 N 1.31624 * 119.99769 * 11.28118 * 9 7 5 11 11 Si 1.86793 * 120.00146 * 191.27436 * 9 7 5 12 12 H 1.48505 * 109.46990 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46967 * 120.00109 * 11 9 7 14 14 H 1.48495 * 109.47398 * 240.00354 * 11 9 7 15 15 N 1.46502 * 109.47081 * 240.00342 * 2 1 3 16 16 C 1.34780 * 120.00391 * 84.99840 * 15 2 1 17 17 O 1.21717 * 119.99482 * 0.02562 * 16 15 2 18 18 C 1.46580 * 120.00320 * 180.02562 * 16 15 2 19 19 C 1.40643 * 126.53601 * 359.95658 * 18 16 15 20 20 N 1.30701 * 108.72573 * 180.02562 * 19 18 16 21 21 N 1.39903 * 109.51704 * 359.97438 * 20 19 18 22 22 C 1.36327 * 132.15662 * 180.26826 * 21 20 19 23 23 C 1.35756 * 119.15190 * 180.20614 * 22 21 20 24 24 C 1.39960 * 119.35360 * 359.50459 * 23 22 21 25 25 N 1.31500 * 120.11284 * 0.25222 * 24 23 22 26 26 C 1.33383 * 120.84928 * 0.02562 * 25 24 23 27 27 H 1.08998 * 109.47024 * 59.99669 * 1 2 3 28 28 H 1.08997 * 109.47225 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46999 * 299.99684 * 1 2 3 30 30 H 1.09000 * 109.47096 * 294.99463 * 4 2 1 31 31 H 1.09000 * 109.47347 * 54.99723 * 4 2 1 32 32 H 1.09001 * 109.47510 * 94.58129 * 6 5 4 33 33 H 1.09001 * 109.47442 * 214.58414 * 6 5 4 34 34 H 1.09004 * 109.46780 * 334.57922 * 6 5 4 35 35 H 0.97004 * 119.99955 * 179.97438 * 10 9 7 36 36 H 0.97001 * 119.99695 * 264.99882 * 15 2 1 37 37 H 1.08004 * 125.64156 * 0.03758 * 19 18 16 38 38 H 1.07999 * 120.42231 * 359.96378 * 22 21 20 39 39 H 1.07996 * 120.32143 * 179.77876 * 23 22 21 40 40 H 1.08006 * 119.94682 * 180.22523 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1904 6 6 4.1259 -1.9919 0.5610 7 6 4.2800 0.1649 1.7238 8 1 3.8837 0.8067 2.4968 9 6 5.5798 0.3446 1.2713 10 7 5.9916 -0.2792 0.1879 11 14 6.7446 1.4719 2.1996 12 1 6.0435 2.0487 3.3748 13 1 7.9238 0.6951 2.6593 14 1 7.1925 2.5676 1.3030 15 7 2.0183 -0.6905 -1.1962 16 6 2.1470 -0.0182 -2.3572 17 8 1.8579 1.1629 -2.4117 18 6 2.6351 -0.7093 -3.5542 19 6 3.0073 -2.0624 -3.6466 20 7 3.3891 -2.3099 -4.8718 21 7 3.2871 -1.1436 -5.6378 22 6 3.5553 -0.8836 -6.9489 23 6 3.3617 0.3721 -7.4271 24 6 2.8821 1.3672 -6.5677 25 7 2.6276 1.0852 -5.3087 26 6 2.8209 -0.1450 -4.8308 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.7518 -0.1584 2.1369 31 1 1.6054 -1.7199 1.2951 32 1 4.3540 -1.7639 -0.4802 33 1 5.0468 -2.2393 1.0890 34 1 3.4424 -2.8398 0.6060 35 1 6.8999 -0.1534 -0.1286 36 1 2.2490 -1.6317 -1.1527 37 1 2.9817 -2.7787 -2.8386 38 1 3.9209 -1.6657 -7.5978 39 1 3.5715 0.5998 -8.4617 40 1 2.7211 2.3686 -6.9390 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754318736.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:42 Heat of formation + Delta-G solvation = 114.250869 kcal Electronic energy + Delta-G solvation = -24987.013974 eV Core-core repulsion = 21419.338570 eV Total energy + Delta-G solvation = -3567.675404 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.144 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.40842 -38.92792 -37.93085 -36.12936 -34.06983 -33.81227 -31.49562 -31.00481 -30.29246 -28.88077 -26.09772 -25.52376 -24.97317 -24.00234 -22.48889 -21.55781 -20.27803 -19.63938 -18.34166 -17.36920 -16.81627 -16.67116 -16.16259 -15.80564 -15.20823 -14.75851 -14.38408 -14.08675 -13.63681 -13.52098 -13.37465 -13.10740 -12.98758 -12.72803 -12.65722 -12.04931 -11.83478 -11.48722 -11.35335 -11.23353 -10.97245 -10.78809 -10.69136 -10.46603 -10.10987 -9.86943 -9.84000 -9.78117 -9.67989 -9.11173 -8.51480 -8.22559 -7.86553 -6.66041 -5.65684 -3.11262 0.35502 0.72231 1.90093 2.30016 3.21135 3.43101 3.50500 3.52268 3.76693 3.80079 4.11946 4.19287 4.26207 4.57461 4.68509 4.90210 5.15207 5.17164 5.31328 5.43485 5.58079 5.71505 5.80596 5.86123 6.01792 6.12179 6.19152 6.21534 6.35368 6.40220 6.58330 6.64337 6.73634 7.02980 7.28961 7.35121 7.42046 7.60198 7.72996 7.87834 8.36946 8.46622 9.11492 9.30379 9.93074 10.41255 11.39439 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.014700 B = 0.004694 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.325985 B = 5963.981550 C = 6647.776385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.121 3.879 3 H 0.085 0.915 4 C 0.143 3.857 5 N -0.597 5.597 6 C 0.161 3.839 7 C -0.254 4.254 8 H 0.068 0.932 9 C 0.005 3.995 10 N -0.903 5.903 11 Si 0.902 3.098 12 H -0.278 1.278 13 H -0.291 1.291 14 H -0.292 1.292 15 N -0.697 5.697 16 C 0.597 3.403 17 O -0.541 6.541 18 C -0.265 4.265 19 C 0.133 3.867 20 N -0.314 5.314 21 N -0.310 5.310 22 C 0.163 3.837 23 C -0.227 4.227 24 C 0.175 3.825 25 N -0.435 5.435 26 C 0.309 3.691 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.041 0.959 32 H 0.032 0.968 33 H 0.042 0.958 34 H -0.006 1.006 35 H 0.249 0.751 36 H 0.390 0.610 37 H 0.204 0.796 38 H 0.181 0.819 39 H 0.168 0.832 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.704 -4.023 -14.906 17.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.013 3.987 3 H 0.103 0.897 4 C 0.015 3.985 5 N -0.319 5.319 6 C 0.016 3.984 7 C -0.383 4.383 8 H 0.086 0.914 9 C -0.193 4.193 10 N -0.548 5.548 11 Si 0.732 3.268 12 H -0.203 1.203 13 H -0.218 1.218 14 H -0.219 1.219 15 N -0.347 5.347 16 C 0.384 3.616 17 O -0.419 6.419 18 C -0.281 4.281 19 C -0.048 4.048 20 N -0.136 5.136 21 N -0.079 5.079 22 C 0.027 3.973 23 C -0.251 4.251 24 C -0.008 4.008 25 N -0.145 5.145 26 C 0.079 3.921 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.013 0.987 35 H 0.059 0.941 36 H 0.224 0.776 37 H 0.220 0.780 38 H 0.198 0.802 39 H 0.186 0.814 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -7.615 -3.664 -14.923 17.149 hybrid contribution 1.115 0.198 0.189 1.148 sum -6.500 -3.465 -14.734 16.473 Atomic orbital electron populations 1.22157 0.97074 1.00948 1.01599 1.21808 0.91499 0.99184 0.86167 0.89660 1.21201 0.85757 0.97168 0.94402 1.43878 0.99080 1.20833 1.68113 1.20850 0.94486 0.85066 0.97951 1.19207 0.94497 1.10531 1.14096 0.91408 1.25014 0.98935 0.99054 0.96334 1.70052 1.16996 1.45691 1.22060 0.86222 0.81075 0.80305 0.79169 1.20318 1.21793 1.21864 1.45492 1.66929 1.13286 1.08946 1.16624 0.77345 0.85928 0.81733 1.90780 1.51112 1.14968 1.84992 1.19669 1.21021 0.94162 0.93278 1.24145 0.91193 0.95168 0.94316 1.77556 1.30177 1.01381 1.04495 1.47029 1.41974 1.10403 1.08460 1.22082 0.94379 0.98739 0.82080 1.21879 1.07379 0.92273 1.03584 1.23585 0.89186 1.00327 0.87731 1.68333 1.16445 1.15106 1.14577 1.20378 0.95439 0.84412 0.91904 0.92943 0.93310 0.92249 0.92364 0.94074 0.95000 0.93958 0.98724 0.94068 0.77612 0.77965 0.80236 0.81440 0.80175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.48 37.16 0.35 -2.18 16 2 C 0.12 2.38 2.88 -67.93 -0.20 2.19 16 3 H 0.09 2.04 7.58 -51.93 -0.39 1.65 16 4 C 0.14 2.83 5.33 -4.04 -0.02 2.81 16 5 N -0.60 -14.58 2.78 -181.12 -0.50 -15.08 16 6 C 0.16 3.76 7.60 59.84 0.46 4.22 16 7 C -0.25 -7.01 9.66 -15.06 -0.15 -7.16 16 8 H 0.07 1.85 7.85 -52.49 -0.41 1.44 16 9 C 0.01 0.14 5.13 -17.43 -0.09 0.05 16 10 N -0.90 -26.63 10.66 55.49 0.59 -26.04 16 11 Si 0.90 22.59 29.57 -169.99 -5.03 17.57 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 15 N -0.70 -13.59 4.40 -55.14 -0.24 -13.84 16 16 C 0.60 12.91 7.75 -12.89 -0.10 12.81 16 17 O -0.54 -13.56 16.40 5.17 0.08 -13.48 16 18 C -0.27 -5.06 6.17 -104.66 -0.65 -5.70 16 19 C 0.13 2.10 11.44 -17.13 -0.20 1.90 16 20 N -0.31 -4.89 12.58 30.77 0.39 -4.50 16 21 N -0.31 -4.57 3.86 -11.97 -0.05 -4.61 16 22 C 0.16 1.56 11.29 -16.44 -0.19 1.37 16 23 C -0.23 -1.69 10.05 -39.83 -0.40 -2.09 16 24 C 0.18 1.84 11.28 -17.05 -0.19 1.65 16 25 N -0.43 -7.30 10.26 -12.00 -0.12 -7.42 16 26 C 0.31 5.53 7.74 -155.84 -1.21 4.33 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 31 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 32 H 0.03 0.79 6.90 -51.93 -0.36 0.44 16 33 H 0.04 1.09 7.30 -51.93 -0.38 0.71 16 34 H -0.01 -0.11 7.84 -51.93 -0.41 -0.52 16 35 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.39 6.80 6.09 -40.82 -0.25 6.55 16 37 H 0.20 2.53 7.46 -52.48 -0.39 2.14 16 38 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.17 0.46 8.06 -52.49 -0.42 0.04 16 40 H 0.18 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 341.47 15.07 5.15 5.15 Total: -1.00 -38.14 341.47 -7.39 -45.53 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.09 Total: 2.52 kcal Atomic # 6 Polarization: 16.77 SS G_CDS: -2.57 Total: 14.20 kcal Atomic # 7 Polarization: -71.55 SS G_CDS: 0.06 Total: -71.49 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.08 Total: -13.48 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.03 Total: 17.57 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -38.14 -7.39 -45.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754318736.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.777 kcal (2) G-P(sol) polarization free energy of solvation -38.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds