Wall clock time and date at job start Tue Mar 31 2020 08:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46961 * 2 1 4 4 C 1.52996 * 109.47067 * 240.00216 * 2 1 3 5 5 N 1.46505 * 109.47100 * 184.99935 * 4 2 1 6 6 C 1.46500 * 119.99672 * 269.99640 * 5 4 2 7 7 C 1.36937 * 120.00047 * 89.99924 * 5 4 2 8 8 H 1.08002 * 119.99873 * 22.34782 * 7 5 4 9 9 C 1.38809 * 119.99887 * 202.34761 * 7 5 4 10 10 N 1.31616 * 120.00305 * 11.25499 * 9 7 5 11 11 Si 1.86802 * 119.99820 * 191.25327 * 9 7 5 12 12 H 1.48495 * 109.47386 * 60.00211 * 11 9 7 13 13 H 1.48503 * 109.47071 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.46853 * 299.99834 * 11 9 7 15 15 N 1.46495 * 109.47265 * 120.00030 * 2 1 3 16 16 C 1.34777 * 119.99848 * 274.99797 * 15 2 1 17 17 O 1.21713 * 120.00177 * 0.02562 * 16 15 2 18 18 C 1.46595 * 119.99817 * 179.97438 * 16 15 2 19 19 C 1.40641 * 126.53825 * 0.02962 * 18 16 15 20 20 N 1.30694 * 108.72460 * 179.97438 * 19 18 16 21 21 N 1.39899 * 109.52051 * 0.02562 * 20 19 18 22 22 C 1.36326 * 132.15745 * 180.30061 * 21 20 19 23 23 C 1.35753 * 119.14986 * 180.17769 * 22 21 20 24 24 C 1.39957 * 119.35977 * 359.49322 * 23 22 21 25 25 N 1.31502 * 120.10854 * 0.25936 * 24 23 22 26 26 C 1.33384 * 120.85025 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.47245 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46942 * 299.99728 * 1 2 3 29 29 H 1.08997 * 109.47403 * 59.99766 * 1 2 3 30 30 H 1.09000 * 109.47159 * 304.99820 * 4 2 1 31 31 H 1.09000 * 109.47612 * 64.99411 * 4 2 1 32 32 H 1.08997 * 109.46810 * 94.24932 * 6 5 4 33 33 H 1.09006 * 109.46867 * 214.24222 * 6 5 4 34 34 H 1.08996 * 109.47359 * 334.24584 * 6 5 4 35 35 H 0.96990 * 120.00498 * 180.02562 * 10 9 7 36 36 H 0.97003 * 120.00258 * 95.00179 * 15 2 1 37 37 H 1.08001 * 125.63617 * 359.97438 * 19 18 16 38 38 H 1.07992 * 120.42251 * 359.92177 * 22 21 20 39 39 H 1.08008 * 120.31730 * 179.77480 * 23 22 21 40 40 H 1.07996 * 119.94980 * 180.27444 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1906 6 6 4.3342 0.2342 -1.7613 7 6 4.0850 -1.9158 -0.6023 8 1 3.5339 -2.8399 -0.5088 9 6 5.3862 -1.8324 -0.1262 10 7 5.9801 -0.6613 -0.0355 11 14 6.2945 -3.3824 0.3857 12 1 6.3955 -4.3032 -0.7749 13 1 7.6575 -3.0253 0.8549 14 1 5.5525 -4.0507 1.4848 15 7 2.0183 -0.6906 1.1961 16 6 2.1471 -0.0182 2.3571 17 8 1.8572 1.1626 2.4118 18 6 2.6352 -0.7094 3.5541 19 6 3.0072 -2.0626 3.6465 20 7 3.3891 -2.3100 4.8717 21 7 3.2875 -1.1437 5.6375 22 6 3.5654 -0.8813 6.9461 23 6 3.3619 0.3718 7.4270 24 6 2.8824 1.3670 6.5677 25 7 2.6280 1.0851 5.3086 26 6 2.8213 -0.1451 4.8307 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.6054 -1.7197 -1.2952 31 1 1.7515 -0.1583 -2.1370 32 1 4.6025 0.9454 -0.9802 33 1 5.2402 -0.2028 -2.1815 34 1 3.7808 0.7487 -2.5469 35 1 6.8894 -0.6031 0.2968 36 1 2.2491 -1.6318 1.1526 37 1 2.9815 -2.7788 2.8386 38 1 3.9388 -1.6614 7.5930 39 1 3.5723 0.5996 8.4616 40 1 2.7212 2.3682 6.9390 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754318737.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:50 Heat of formation + Delta-G solvation = 113.568730 kcal Electronic energy + Delta-G solvation = -25223.319409 eV Core-core repulsion = 21655.614425 eV Total energy + Delta-G solvation = -3567.704984 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.144 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -42.32721 -38.83215 -37.85350 -36.09761 -34.00951 -33.76653 -31.49021 -30.99706 -30.17996 -28.77199 -26.09090 -25.53555 -24.89793 -23.92572 -22.38353 -21.59354 -20.24787 -19.46905 -18.29180 -17.26054 -16.91454 -16.47268 -16.08301 -15.69574 -15.22306 -14.80432 -14.31413 -14.00926 -13.63575 -13.45641 -13.32841 -13.02310 -12.89663 -12.68524 -12.59649 -12.09720 -11.76900 -11.39479 -11.31753 -11.22059 -11.10483 -10.80669 -10.67656 -10.30796 -10.14998 -10.03051 -9.77715 -9.77462 -9.59627 -9.03106 -8.52538 -8.13816 -7.76529 -6.71768 -5.69211 -3.14996 0.42196 0.78965 1.98782 2.40748 3.27346 3.34769 3.42302 3.44156 3.84365 3.88177 4.19974 4.25779 4.36821 4.49118 4.74381 4.99862 5.21859 5.28878 5.38850 5.41350 5.58069 5.75696 5.84617 5.90550 6.07077 6.12117 6.26499 6.29997 6.36806 6.47713 6.55770 6.67553 6.82901 7.01494 7.38853 7.44023 7.49965 7.66360 7.74383 7.86347 8.41204 8.53676 9.21650 9.25445 9.89806 10.40350 11.34888 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.005874 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.066717 B = 4765.656814 C = 6035.941043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.122 3.878 3 H 0.076 0.924 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.165 3.835 7 C -0.256 4.256 8 H 0.066 0.934 9 C 0.008 3.992 10 N -0.897 5.897 11 Si 0.893 3.107 12 H -0.284 1.284 13 H -0.293 1.293 14 H -0.281 1.281 15 N -0.687 5.687 16 C 0.597 3.403 17 O -0.550 6.550 18 C -0.262 4.262 19 C 0.136 3.864 20 N -0.315 5.315 21 N -0.310 5.310 22 C 0.164 3.836 23 C -0.229 4.229 24 C 0.173 3.827 25 N -0.434 5.434 26 C 0.306 3.694 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.028 0.972 33 H 0.043 0.957 34 H -0.005 1.005 35 H 0.251 0.749 36 H 0.399 0.601 37 H 0.206 0.794 38 H 0.180 0.820 39 H 0.167 0.833 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.296 -0.303 12.734 14.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.014 3.986 3 H 0.094 0.906 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.020 3.980 7 C -0.386 4.386 8 H 0.084 0.916 9 C -0.191 4.191 10 N -0.541 5.541 11 Si 0.723 3.277 12 H -0.211 1.211 13 H -0.219 1.219 14 H -0.207 1.207 15 N -0.336 5.336 16 C 0.383 3.617 17 O -0.429 6.429 18 C -0.278 4.278 19 C -0.045 4.045 20 N -0.137 5.137 21 N -0.079 5.079 22 C 0.027 3.973 23 C -0.253 4.253 24 C -0.010 4.010 25 N -0.144 5.144 26 C 0.076 3.924 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.014 0.986 35 H 0.062 0.938 36 H 0.235 0.765 37 H 0.222 0.778 38 H 0.197 0.803 39 H 0.185 0.815 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -7.186 0.101 12.721 14.610 hybrid contribution 1.033 -1.262 0.541 1.718 sum -6.152 -1.161 13.262 14.666 Atomic orbital electron populations 1.22162 0.97090 1.01119 1.01459 1.21761 0.91623 0.98398 0.86789 0.90564 1.21189 0.85919 0.97844 0.93655 1.43869 0.98918 1.22600 1.66628 1.20785 0.92900 0.90486 0.93829 1.19004 0.97116 0.89383 1.33092 0.91641 1.24982 0.98689 0.95947 0.99470 1.70054 1.13275 1.21549 1.49231 0.86531 0.79507 0.83172 0.78498 1.21095 1.21861 1.20748 1.45421 1.65936 1.13980 1.08254 1.16631 0.77327 0.85856 0.81871 1.90755 1.51824 1.15119 1.85222 1.19682 1.20760 0.94124 0.93206 1.24232 0.90699 0.95366 0.94176 1.77578 1.30253 1.01297 1.04619 1.47049 1.41911 1.10432 1.08545 1.22069 0.94316 0.98702 0.82166 1.21853 1.07606 0.92378 1.03479 1.23556 0.89438 1.00251 0.87793 1.68320 1.16363 1.15178 1.14564 1.20375 0.95724 0.84403 0.91913 0.93126 0.92924 0.92420 0.93396 0.93045 0.95412 0.93794 0.98615 0.93816 0.76542 0.77787 0.80331 0.81533 0.80256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.48 37.16 0.35 -2.19 16 2 C 0.12 2.39 2.88 -67.94 -0.20 2.20 16 3 H 0.08 1.73 7.58 -51.93 -0.39 1.34 16 4 C 0.14 2.79 5.36 -4.04 -0.02 2.77 16 5 N -0.60 -14.41 2.82 -181.12 -0.51 -14.92 16 6 C 0.16 4.10 9.01 59.85 0.54 4.64 16 7 C -0.26 -6.51 8.02 -15.06 -0.12 -6.63 16 8 H 0.07 1.58 7.84 -52.49 -0.41 1.17 16 9 C 0.01 0.23 5.13 -17.43 -0.09 0.14 16 10 N -0.90 -25.94 10.58 55.49 0.59 -25.35 16 11 Si 0.89 21.18 29.57 -169.99 -5.03 16.16 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 15 N -0.69 -14.03 4.48 -55.14 -0.25 -14.28 16 16 C 0.60 13.30 7.75 -12.89 -0.10 13.20 16 17 O -0.55 -13.84 16.40 5.18 0.08 -13.76 16 18 C -0.26 -5.30 6.17 -104.65 -0.65 -5.95 16 19 C 0.14 2.44 11.44 -17.13 -0.20 2.24 16 20 N -0.32 -5.45 12.58 30.76 0.39 -5.07 16 21 N -0.31 -4.92 3.86 -11.97 -0.05 -4.97 16 22 C 0.16 1.71 11.29 -16.44 -0.19 1.53 16 23 C -0.23 -1.85 10.05 -39.83 -0.40 -2.25 16 24 C 0.17 1.90 11.28 -17.05 -0.19 1.71 16 25 N -0.43 -7.50 10.26 -12.00 -0.12 -7.62 16 26 C 0.31 5.74 7.74 -155.84 -1.21 4.54 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.88 8.03 -51.93 -0.42 0.46 16 31 H 0.05 0.92 7.86 -51.93 -0.41 0.52 16 32 H 0.03 0.77 7.42 -51.93 -0.39 0.38 16 33 H 0.04 1.17 7.19 -51.93 -0.37 0.79 16 34 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 35 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.40 7.79 6.32 -40.82 -0.26 7.53 16 37 H 0.21 3.19 7.46 -52.49 -0.39 2.80 16 38 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.17 0.56 8.06 -52.48 -0.42 0.14 16 40 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 341.93 15.07 5.15 5.15 Total: -1.00 -36.32 341.93 -7.32 -43.64 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.12 Total: 5.09 kcal Atomic # 6 Polarization: 18.39 SS G_CDS: -2.46 Total: 15.93 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: 0.05 Total: -72.22 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.08 Total: -13.76 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.32 -7.32 -43.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754318737.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.209 kcal (2) G-P(sol) polarization free energy of solvation -36.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds