Wall clock time and date at job start Tue Mar 31 2020 08:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86807 * 120.00127 * 2 1 4 4 H 1.48499 * 109.47130 * 270.00595 * 3 2 1 5 5 H 1.48502 * 109.46609 * 30.00275 * 3 2 1 6 6 H 1.48496 * 109.47067 * 149.99897 * 3 2 1 7 7 C 1.38648 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00524 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00122 * 359.97438 * 7 2 1 10 10 C 1.35752 * 117.00725 * 185.40595 * 9 7 2 11 11 C 1.38947 * 120.03702 * 185.92955 * 10 9 7 12 12 C 1.38130 * 120.07090 * 179.97438 * 11 10 9 13 13 C 1.38203 * 120.13429 * 359.71727 * 12 11 10 14 14 C 1.38920 * 120.07050 * 0.55987 * 13 12 11 15 15 N 1.39923 * 120.03523 * 179.71742 * 14 13 12 16 16 C 1.34773 * 120.00018 * 326.15321 * 15 14 13 17 17 O 1.21287 * 120.00330 * 354.79200 * 16 15 14 18 18 C 1.50697 * 119.99764 * 174.79288 * 16 15 14 19 19 C 1.52998 * 109.47350 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.46836 * 295.00100 * 19 18 16 21 21 C 1.53004 * 109.47142 * 179.97438 * 20 19 18 22 22 C 1.52995 * 109.47337 * 59.99699 * 21 20 19 23 23 C 1.52999 * 109.47250 * 300.00235 * 22 21 20 24 24 C 1.52995 * 109.47502 * 174.99887 * 19 18 16 25 25 C 1.38735 * 120.02850 * 5.91141 * 10 9 7 26 26 H 0.97001 * 120.00282 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.96354 * 359.97438 * 11 10 9 28 28 H 1.07999 * 119.92854 * 180.02562 * 12 11 10 29 29 H 1.08005 * 119.95909 * 180.29705 * 13 12 11 30 30 H 0.97004 * 119.99474 * 146.15827 * 15 14 13 31 31 H 1.09010 * 109.47367 * 299.99820 * 18 16 15 32 32 H 1.09002 * 109.47349 * 59.99691 * 18 16 15 33 33 H 1.09004 * 109.47217 * 54.99255 * 19 18 16 34 34 H 1.09006 * 109.47033 * 299.99458 * 20 19 18 35 35 H 1.08998 * 109.47632 * 59.99843 * 20 19 18 36 36 H 1.09006 * 109.46725 * 299.99660 * 21 20 19 37 37 H 1.09005 * 109.47241 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.47580 * 180.02562 * 22 21 20 39 39 H 1.08996 * 109.47171 * 60.00352 * 22 21 20 40 40 H 1.09006 * 109.47033 * 300.00174 * 23 22 21 41 41 H 1.08998 * 109.47632 * 179.97438 * 23 22 21 42 42 H 1.08995 * 109.47037 * 299.99778 * 24 19 18 43 43 H 1.08996 * 109.47171 * 60.00077 * 24 19 18 44 44 H 1.08000 * 120.07156 * 0.03787 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0694 -3.5043 0.1129 11 6 1.4545 -4.7448 -0.0037 12 6 2.2014 -5.9011 0.1111 13 6 3.5630 -5.8280 0.3362 14 6 4.1827 -4.5908 0.4595 15 7 5.5604 -4.5178 0.6933 16 6 6.1678 -5.4601 1.4412 17 8 5.5081 -6.3176 1.9894 18 6 7.6667 -5.4483 1.5964 19 6 8.0965 -6.6158 2.4869 20 6 7.5419 -6.4118 3.8982 21 6 7.9712 -7.5796 4.7886 22 6 9.4987 -7.6431 4.8452 23 6 10.0534 -7.8472 3.4340 24 6 9.6242 -6.6787 2.5434 25 6 3.4350 -3.4276 0.3449 26 1 -0.4850 0.8400 0.0004 27 1 0.3914 -4.8051 -0.1842 28 1 1.7212 -6.8641 0.0197 29 1 4.1451 -6.7338 0.4207 30 1 6.0781 -3.7888 0.3171 31 1 8.1343 -5.5479 0.6167 32 1 7.9774 -4.5087 2.0533 33 1 7.7094 -7.5481 2.0757 34 1 7.9290 -5.4794 4.3094 35 1 6.4536 -6.3669 3.8579 36 1 7.5837 -8.5117 4.3772 37 1 7.5764 -7.4340 5.7942 38 1 9.8046 -8.4754 5.4792 39 1 9.8862 -6.7111 5.2566 40 1 9.6659 -8.7793 3.0226 41 1 11.1417 -7.8920 3.4742 42 1 10.0192 -6.8241 1.5381 43 1 10.0112 -5.7465 2.9547 44 1 3.9152 -2.4645 0.4362 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036681595.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:31 Heat of formation + Delta-G solvation = -66.342749 kcal Electronic energy + Delta-G solvation = -24149.544605 eV Core-core repulsion = 20645.285666 eV Total energy + Delta-G solvation = -3504.258939 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.39787 -38.99642 -38.16890 -36.38721 -34.20491 -32.86610 -32.23426 -30.85573 -29.53381 -28.71847 -27.05328 -25.29457 -22.84499 -22.61273 -21.81700 -21.18729 -19.92815 -19.83539 -17.96322 -17.67046 -16.72937 -15.74407 -15.58535 -15.31099 -15.03376 -14.50621 -14.40591 -14.31920 -14.02877 -14.02100 -13.58299 -13.46854 -12.97801 -12.65751 -12.41249 -12.34088 -12.07315 -11.86925 -11.69396 -11.52340 -11.27977 -11.16169 -11.09195 -10.93437 -10.81832 -10.60550 -10.47173 -10.36601 -10.19014 -9.82575 -9.57292 -9.27933 -8.81461 -7.72649 -7.15540 -6.45716 -4.05495 1.97472 2.37498 2.88271 3.10915 3.11691 3.16122 3.28891 3.94864 4.44786 4.52623 4.54031 4.60550 4.81640 4.92860 5.04269 5.09332 5.18844 5.27497 5.30445 5.31475 5.38910 5.44526 5.50472 5.55226 5.69963 5.74593 5.86330 5.95850 5.98970 6.01455 6.03829 6.08160 6.13426 6.24861 6.28413 6.36616 6.41040 6.64316 6.97951 7.00028 7.12108 7.31025 7.41851 7.71686 7.82064 7.98465 8.35578 8.99645 9.70371 10.72418 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.019909 B = 0.002919 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.051374 B = 9590.639229 C =10440.840813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.392 4.392 8 H 0.090 0.910 9 O -0.176 6.176 10 C 0.168 3.832 11 C -0.201 4.201 12 C -0.063 4.063 13 C -0.206 4.206 14 C 0.181 3.819 15 N -0.672 5.672 16 C 0.509 3.491 17 O -0.516 6.516 18 C -0.138 4.138 19 C -0.070 4.070 20 C -0.122 4.122 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.115 4.115 25 C -0.257 4.257 26 H 0.270 0.730 27 H 0.118 0.882 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.406 0.594 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.221 -10.999 4.244 22.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.468 4.468 8 H 0.107 0.893 9 O -0.080 6.080 10 C 0.114 3.886 11 C -0.221 4.221 12 C -0.082 4.082 13 C -0.226 4.226 14 C 0.088 3.912 15 N -0.317 5.317 16 C 0.297 3.703 17 O -0.391 6.391 18 C -0.178 4.178 19 C -0.089 4.089 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.152 4.152 25 C -0.279 4.279 26 H 0.080 0.920 27 H 0.136 0.864 28 H 0.133 0.867 29 H 0.136 0.864 30 H 0.241 0.759 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 18.366 -11.411 4.627 22.112 hybrid contribution 0.789 1.361 -0.174 1.583 sum 19.155 -10.050 4.453 22.085 Atomic orbital electron populations 1.70032 1.05939 1.27650 1.46090 1.25275 0.95832 0.98788 0.96597 0.85729 0.78877 0.80222 0.78669 1.19888 1.20251 1.19302 1.21260 0.91642 0.80899 1.53025 0.89290 1.84019 1.33933 1.11368 1.78665 1.19088 0.89529 0.88103 0.91904 1.20250 1.00129 0.90016 1.11679 1.20530 0.93186 0.96907 0.97597 1.20523 0.95139 0.95853 1.11124 1.17422 0.81834 0.93942 0.98027 1.43594 1.07737 1.28571 1.51790 1.20775 0.90456 0.81270 0.77840 1.90688 1.66496 1.36658 1.45290 1.21781 0.91988 1.01622 1.02382 1.20906 0.94689 0.97778 0.95480 1.21729 1.02702 0.97690 0.93813 1.21498 0.95167 0.99163 0.99645 1.21557 0.96148 1.01407 0.96669 1.21519 0.99914 0.98586 0.95551 1.21611 0.95152 0.98825 0.99657 1.20822 0.94419 0.97298 1.15343 0.92010 0.86408 0.86661 0.86414 0.75946 0.88787 0.88873 0.90322 0.92730 0.89747 0.92001 0.92270 0.92404 0.92200 0.91996 0.92240 0.92037 0.91942 0.85310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.21 13.67 55.48 0.76 -24.45 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.25 29.55 -169.99 -5.02 15.22 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.39 -10.84 9.44 30.88 0.29 -10.55 16 8 H 0.09 2.26 5.30 -52.49 -0.28 1.98 16 9 O -0.18 -5.03 9.76 0.04 0.00 -5.03 16 10 C 0.17 4.09 6.64 -39.14 -0.26 3.83 16 11 C -0.20 -4.35 9.99 -39.36 -0.39 -4.74 16 12 C -0.06 -1.20 10.03 -39.63 -0.40 -1.60 16 13 C -0.21 -3.95 8.65 -39.34 -0.34 -4.29 16 14 C 0.18 3.45 6.27 -83.72 -0.52 2.93 16 15 N -0.67 -9.92 5.34 -9.88 -0.05 -9.97 16 16 C 0.51 7.12 7.28 -10.99 -0.08 7.04 16 17 O -0.52 -8.97 11.68 5.55 0.06 -8.90 16 18 C -0.14 -1.30 5.18 -27.89 -0.14 -1.44 16 19 C -0.07 -0.67 1.84 -90.62 -0.17 -0.84 16 20 C -0.12 -1.32 4.94 -26.73 -0.13 -1.45 16 21 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 22 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 23 C -0.12 -0.88 5.93 -26.70 -0.16 -1.04 16 24 C -0.11 -0.87 5.21 -26.70 -0.14 -1.01 16 25 C -0.26 -5.58 9.04 -39.21 -0.35 -5.93 16 26 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 28 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 29 H 0.12 2.20 6.45 -52.48 -0.34 1.86 16 30 H 0.41 4.68 8.82 -40.82 -0.36 4.32 16 31 H 0.09 0.70 8.14 -51.92 -0.42 0.27 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.88 7.96 -51.93 -0.41 0.46 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 1.17 5.95 -51.93 -0.31 0.86 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.13 2.74 5.71 -52.49 -0.30 2.44 16 LS Contribution 353.27 15.07 5.32 5.32 Total: -1.00 -32.12 353.27 -8.77 -40.89 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -6.63 Total: 7.43 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -3.21 Total: -20.51 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.71 Total: -34.42 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.07 Total: -13.93 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.12 -8.77 -40.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036681595.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.456 kcal (2) G-P(sol) polarization free energy of solvation -32.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds