Wall clock time and date at job start Tue Mar 31 2020 08:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86795 * 120.00179 * 2 1 4 4 H 1.48505 * 109.47191 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47295 * 29.99751 * 3 2 1 6 6 H 1.48499 * 109.47479 * 150.00357 * 3 2 1 7 7 C 1.38651 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00353 * 179.97438 * 7 2 1 9 9 O 1.34837 * 119.99941 * 359.97438 * 7 2 1 10 10 C 1.35748 * 116.99972 * 174.58937 * 9 7 2 11 11 C 1.38955 * 120.03366 * 173.82073 * 10 9 7 12 12 C 1.38122 * 120.07148 * 179.77577 * 11 10 9 13 13 C 1.38206 * 120.13862 * 0.50815 * 12 11 10 14 14 C 1.38920 * 120.06462 * 359.74559 * 13 12 11 15 15 N 1.39921 * 120.03360 * 180.02562 * 14 13 12 16 16 C 1.34775 * 120.00297 * 326.32631 * 15 14 13 17 17 O 1.21295 * 119.99762 * 354.78375 * 16 15 14 18 18 C 1.50702 * 120.00390 * 174.78346 * 16 15 14 19 19 C 1.53005 * 109.47234 * 179.97438 * 18 16 15 20 20 C 1.52991 * 109.47170 * 180.02562 * 19 18 16 21 21 C 1.54275 * 110.03211 * 292.91093 * 20 19 18 22 22 C 1.54962 * 104.15650 * 217.13486 * 21 20 19 23 23 C 1.54884 * 102.78146 * 37.88913 * 22 21 20 24 24 C 1.53876 * 110.03368 * 175.69179 * 20 19 18 25 25 C 1.38730 * 120.03629 * 354.10685 * 10 9 7 26 26 H 0.97004 * 119.99573 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.96091 * 0.02795 * 11 10 9 28 28 H 1.07997 * 119.93194 * 180.25727 * 12 11 10 29 29 H 1.07999 * 119.96778 * 179.76825 * 13 12 11 30 30 H 0.96999 * 119.99973 * 146.32491 * 15 14 13 31 31 H 1.08998 * 109.47198 * 300.00192 * 18 16 15 32 32 H 1.08996 * 109.46805 * 60.00424 * 18 16 15 33 33 H 1.08998 * 109.47197 * 300.00207 * 19 18 16 34 34 H 1.09002 * 109.46786 * 60.00057 * 19 18 16 35 35 H 1.09006 * 110.01908 * 54.29623 * 20 19 18 36 36 H 1.08997 * 110.48326 * 335.78408 * 21 20 19 37 37 H 1.09002 * 110.48741 * 98.42586 * 21 20 19 38 38 H 1.09000 * 110.72364 * 279.57099 * 22 21 20 39 39 H 1.09008 * 110.92219 * 156.29445 * 22 21 20 40 40 H 1.08997 * 110.49221 * 203.40670 * 23 22 21 41 41 H 1.09005 * 110.60318 * 80.81221 * 23 22 21 42 42 H 1.08999 * 110.03258 * 238.56654 * 24 20 19 43 43 H 1.08994 * 110.02823 * 359.97438 * 24 20 19 44 44 H 1.08007 * 120.06845 * 359.94828 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4401 0.6999 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0692 -3.5042 -0.1151 11 6 1.4553 -4.7449 0.0065 12 6 2.2012 -5.9010 -0.1146 13 6 3.5617 -5.8280 -0.3465 14 6 4.1822 -4.5907 -0.4638 15 7 5.5596 -4.5176 -0.6992 16 6 6.3832 -5.4463 -0.1743 17 8 5.9444 -6.2900 0.5786 18 6 7.8494 -5.4366 -0.5228 19 6 8.5533 -6.5862 0.2011 20 6 10.0418 -6.5759 -0.1522 21 6 10.2335 -6.9237 -1.6430 22 6 11.5233 -7.7822 -1.6690 23 6 11.3976 -8.6289 -0.3782 24 6 10.7819 -7.6593 0.6517 25 6 3.4347 -3.4275 -0.3479 26 1 -0.4850 0.8401 -0.0004 27 1 0.3930 -4.8051 0.1919 28 1 1.7209 -6.8641 -0.0238 29 1 4.1428 -6.7338 -0.4370 30 1 5.9216 -3.7984 -1.2401 31 1 7.9677 -5.5581 -1.5995 32 1 8.2900 -4.4889 -0.2135 33 1 8.4350 -6.4642 1.2778 34 1 8.1126 -7.5341 -0.1078 35 1 10.4691 -5.5959 0.0604 36 1 9.3848 -7.4992 -2.0126 37 1 10.3662 -6.0165 -2.2324 38 1 12.4093 -7.1485 -1.6305 39 1 11.5467 -8.4230 -2.5506 40 1 12.3794 -8.9656 -0.0456 41 1 10.7380 -9.4813 -0.5414 42 1 11.5688 -7.2052 1.2539 43 1 10.0806 -8.1920 1.2939 44 1 3.9149 -2.4644 -0.4390 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036987812.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:34 Heat of formation + Delta-G solvation = -64.800565 kcal Electronic energy + Delta-G solvation = -23653.883733 eV Core-core repulsion = 20149.691668 eV Total energy + Delta-G solvation = -3504.192064 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.24650 -38.91709 -38.39190 -36.44245 -34.20137 -33.33115 -32.23849 -29.65418 -29.05061 -28.79991 -27.79774 -25.32408 -23.91322 -21.83968 -21.66854 -20.93600 -19.90886 -19.80638 -17.96488 -17.69312 -16.73405 -16.19817 -15.69014 -15.50070 -15.15965 -15.00289 -14.50738 -14.27302 -13.81741 -13.69507 -13.62107 -13.48003 -13.03984 -12.89741 -12.46418 -12.31146 -11.73981 -11.60448 -11.55506 -11.39905 -11.31304 -11.11643 -11.05758 -11.01718 -10.91208 -10.79595 -10.75154 -10.57243 -10.44552 -9.90028 -9.55285 -9.40975 -8.80996 -7.72745 -7.15643 -6.45644 -4.05341 1.97369 2.37499 2.88241 3.11190 3.11609 3.16488 3.28648 3.95144 4.27913 4.33335 4.42525 4.58288 4.73568 4.84195 4.93540 5.10137 5.15793 5.19757 5.27409 5.29796 5.35434 5.37578 5.40801 5.51279 5.58032 5.65586 5.72670 5.81460 5.85727 5.96236 5.99145 6.02785 6.07130 6.09472 6.22555 6.26599 6.28591 6.63860 6.97856 6.99826 7.12342 7.30901 7.41841 7.71367 7.81929 7.98711 8.34520 8.99763 9.70397 10.72433 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020650 B = 0.002613 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.624618 B =10714.455915 C =11751.641957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.392 4.392 8 H 0.090 0.910 9 O -0.176 6.176 10 C 0.168 3.832 11 C -0.200 4.200 12 C -0.063 4.063 13 C -0.206 4.206 14 C 0.180 3.820 15 N -0.672 5.672 16 C 0.508 3.492 17 O -0.521 6.521 18 C -0.140 4.140 19 C -0.096 4.096 20 C -0.093 4.093 21 C -0.123 4.123 22 C -0.126 4.126 23 C -0.126 4.126 24 C -0.122 4.122 25 C -0.257 4.257 26 H 0.270 0.730 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.406 0.594 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.955 -11.341 -3.536 24.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.468 4.468 8 H 0.107 0.893 9 O -0.080 6.080 10 C 0.113 3.887 11 C -0.220 4.220 12 C -0.082 4.082 13 C -0.227 4.227 14 C 0.087 3.913 15 N -0.317 5.317 16 C 0.295 3.705 17 O -0.397 6.397 18 C -0.180 4.180 19 C -0.134 4.134 20 C -0.112 4.112 21 C -0.160 4.160 22 C -0.164 4.164 23 C -0.163 4.163 24 C -0.160 4.160 25 C -0.279 4.279 26 H 0.080 0.920 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.136 0.864 30 H 0.241 0.759 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 20.255 -11.743 -2.965 23.600 hybrid contribution 0.681 1.355 -0.310 1.548 sum 20.936 -10.388 -3.275 23.600 Atomic orbital electron populations 1.70039 1.05924 1.27634 1.46100 1.25277 0.95842 0.98786 0.96609 0.85728 0.78936 0.80204 0.78642 1.19910 1.20234 1.19273 1.21265 0.91644 0.80893 1.52995 0.89294 1.84019 1.33924 1.11370 1.78656 1.19093 0.89549 0.88113 0.91900 1.20250 1.00145 0.90008 1.11616 1.20531 0.93129 0.96934 0.97645 1.20529 0.94606 0.95836 1.11694 1.17428 0.81409 0.93908 0.98539 1.43584 1.05942 1.29810 1.52332 1.20841 0.88624 0.81097 0.79926 1.90720 1.77519 1.37143 1.34275 1.21727 0.91564 1.01820 1.02890 1.21473 0.93238 0.97912 1.00773 1.21825 0.95200 0.99120 0.95049 1.22515 0.97871 0.99667 0.95988 1.22506 0.97955 0.98230 0.97678 1.22359 1.00475 0.98113 0.95369 1.22210 0.99386 0.96519 0.97841 1.20823 0.94810 0.97234 1.15023 0.92021 0.86383 0.86636 0.86422 0.75896 0.88743 0.88897 0.91102 0.91012 0.91000 0.91321 0.91697 0.91695 0.91783 0.91983 0.91673 0.91961 0.91456 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.18 13.67 55.48 0.76 -24.42 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.29 29.55 -169.99 -5.02 15.27 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.39 -10.87 9.44 30.88 0.29 -10.58 16 8 H 0.09 2.28 5.30 -52.49 -0.28 2.00 16 9 O -0.18 -5.03 9.76 0.04 0.00 -5.03 16 10 C 0.17 4.10 6.64 -39.13 -0.26 3.84 16 11 C -0.20 -4.36 9.99 -39.36 -0.39 -4.75 16 12 C -0.06 -1.22 10.03 -39.64 -0.40 -1.61 16 13 C -0.21 -4.01 8.65 -39.34 -0.34 -4.35 16 14 C 0.18 3.48 6.27 -83.72 -0.52 2.95 16 15 N -0.67 -10.04 5.34 -9.88 -0.05 -10.10 16 16 C 0.51 7.27 7.57 -10.99 -0.08 7.18 16 17 O -0.52 -9.47 13.69 5.54 0.08 -9.39 16 18 C -0.14 -1.31 5.55 -27.88 -0.15 -1.46 16 19 C -0.10 -0.91 3.63 -26.73 -0.10 -1.01 16 20 C -0.09 -0.70 2.93 -89.50 -0.26 -0.97 16 21 C -0.12 -0.85 5.50 -25.03 -0.14 -0.99 16 22 C -0.13 -0.82 6.91 -24.70 -0.17 -0.99 16 23 C -0.13 -0.85 6.83 -25.07 -0.17 -1.02 16 24 C -0.12 -0.90 6.46 -25.61 -0.17 -1.07 16 25 C -0.26 -5.61 9.04 -39.21 -0.35 -5.97 16 26 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.12 2.45 8.06 -52.49 -0.42 2.02 16 28 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 29 H 0.12 2.23 6.43 -52.49 -0.34 1.89 16 30 H 0.41 4.71 8.82 -40.82 -0.36 4.35 16 31 H 0.09 0.71 7.48 -51.93 -0.39 0.32 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.77 8.10 -51.93 -0.42 0.34 16 34 H 0.07 0.76 7.98 -51.93 -0.41 0.35 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.51 7.77 -51.93 -0.40 0.11 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.53 7.67 -51.93 -0.40 0.13 16 44 H 0.13 2.75 5.71 -52.48 -0.30 2.45 16 LS Contribution 359.10 15.07 5.41 5.41 Total: -1.00 -32.66 359.10 -8.81 -41.47 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.66 Total: 6.60 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -3.32 Total: -19.80 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.71 Total: -34.52 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.08 Total: -14.42 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.66 -8.81 -41.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036987812.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.332 kcal (2) G-P(sol) polarization free energy of solvation -32.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds