Wall clock time and date at job start Tue Mar 31 2020 08:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86803 * 119.99555 * 2 1 4 4 H 1.48498 * 109.47302 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47379 * 300.00537 * 3 2 1 6 6 H 1.48501 * 109.47239 * 60.00087 * 3 2 1 7 7 C 1.39935 * 120.00520 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99944 * 197.89137 * 7 2 1 9 9 C 1.41433 * 120.00144 * 17.88841 * 7 2 1 10 10 C 1.40781 * 120.18096 * 204.43738 * 9 7 2 11 11 C 1.37711 * 120.04091 * 180.02562 * 10 9 7 12 12 C 1.38368 * 120.41048 * 359.70044 * 11 10 9 13 13 C 1.39879 * 120.35867 * 0.56004 * 12 11 10 14 14 C 1.47891 * 120.02335 * 179.74119 * 13 12 11 15 15 O 1.21548 * 119.99598 * 179.72419 * 14 13 12 16 16 N 1.34772 * 120.00180 * 359.72422 * 14 13 12 17 17 C 1.46501 * 120.00048 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47269 * 179.97438 * 17 16 14 19 19 C 1.52994 * 109.47287 * 179.97438 * 18 17 16 20 20 O 1.42898 * 109.47139 * 179.97438 * 19 18 17 21 21 C 1.42902 * 114.00063 * 180.02562 * 20 19 18 22 22 C 1.53001 * 109.47097 * 180.02562 * 21 20 19 23 23 C 1.53000 * 117.49729 * 243.62093 * 22 21 20 24 24 C 1.52995 * 60.00039 * 252.51218 * 23 22 21 25 25 C 1.39031 * 119.94909 * 359.46469 * 13 12 11 26 26 H 0.96996 * 120.00517 * 359.97438 * 1 2 3 27 27 H 1.08000 * 119.97881 * 0.02820 * 10 9 7 28 28 H 1.08000 * 119.79035 * 179.97438 * 11 10 9 29 29 H 1.08003 * 119.81736 * 180.27652 * 12 11 10 30 30 H 0.97005 * 119.99729 * 359.97438 * 16 14 13 31 31 H 1.09002 * 109.47436 * 59.99995 * 17 16 14 32 32 H 1.08999 * 109.46765 * 299.99655 * 17 16 14 33 33 H 1.09002 * 109.46709 * 59.99778 * 18 17 16 34 34 H 1.09006 * 109.46838 * 300.00481 * 18 17 16 35 35 H 1.09005 * 109.46807 * 60.00055 * 19 18 17 36 36 H 1.08996 * 109.47292 * 300.00374 * 19 18 17 37 37 H 1.08993 * 109.47118 * 60.00636 * 21 20 19 38 38 H 1.08998 * 109.46837 * 300.00366 * 21 20 19 39 39 H 1.08995 * 115.54960 * 29.32968 * 22 21 20 40 40 H 1.09000 * 117.49957 * 0.02562 * 23 22 21 41 41 H 1.09004 * 117.49694 * 145.02186 * 23 22 21 42 42 H 1.09005 * 117.49578 * 252.51027 * 24 23 22 43 43 H 1.09003 * 117.49925 * 107.49083 * 24 23 22 44 44 H 1.08001 * 120.20140 * 180.23328 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7022 1.3466 -0.0006 5 1 1.8833 2.3966 -1.2124 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2118 -0.0005 8 1 3.0489 -1.2344 0.2868 9 6 1.3523 -2.4070 -0.3773 10 6 1.8266 -3.6499 0.0832 11 6 1.1862 -4.8119 -0.2859 12 6 0.0715 -4.7676 -1.1044 13 6 -0.4111 -3.5423 -1.5761 14 6 -1.5997 -3.5041 -2.4552 15 8 -2.0216 -2.4388 -2.8607 16 7 -2.2151 -4.6505 -2.8066 17 6 -3.3923 -4.6126 -3.6779 18 6 -3.8931 -6.0378 -3.9208 19 6 -5.1228 -5.9982 -4.8302 20 8 -5.5902 -7.3293 -5.0575 21 6 -6.7419 -7.4051 -5.9001 22 6 -7.1521 -8.8689 -6.0727 23 6 -7.0801 -9.4612 -7.4816 24 6 -8.4391 -9.1550 -6.8491 25 6 0.2242 -2.3601 -1.2132 26 1 -0.4851 0.8400 0.0004 27 1 2.6932 -3.6922 0.7263 28 1 1.5538 -5.7632 0.0694 29 1 -0.4260 -5.6845 -1.3843 30 1 -1.8781 -5.5007 -2.4833 31 1 -3.1249 -4.1546 -4.6303 32 1 -4.1784 -4.0272 -3.2012 33 1 -4.1603 -6.4961 -2.9687 34 1 -3.1067 -6.6229 -4.3977 35 1 -4.8559 -5.5397 -5.7824 36 1 -5.9089 -5.4132 -4.3530 37 1 -6.5083 -6.9756 -6.8742 38 1 -7.5619 -6.8495 -5.4452 39 1 -6.9117 -9.5262 -5.2372 40 1 -6.7400 -8.8082 -8.2853 41 1 -6.7921 -10.5086 -7.5731 42 1 -9.0452 -10.0009 -6.5245 43 1 -8.9936 -8.3003 -7.2368 44 1 -0.1472 -1.4115 -1.5720 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044987268.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:17 Heat of formation + Delta-G solvation = -54.780914 kcal Electronic energy + Delta-G solvation = -22879.480163 eV Core-core repulsion = 19375.722583 eV Total energy + Delta-G solvation = -3503.757580 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.26150 -38.77143 -37.19404 -36.89706 -34.99680 -33.74000 -31.86302 -30.00702 -29.42442 -27.56609 -25.52945 -24.94305 -22.80683 -22.41215 -21.74110 -20.97566 -20.82893 -19.44417 -17.72260 -17.20317 -16.58769 -16.15176 -15.92783 -15.36510 -15.12866 -14.95669 -14.70703 -14.57614 -13.79419 -13.77766 -13.46929 -13.15732 -12.65463 -12.63348 -12.48070 -11.98574 -11.96471 -11.71878 -11.65451 -11.32860 -11.25283 -11.14313 -11.05923 -10.83764 -10.73088 -10.55588 -10.48359 -10.02668 -9.79440 -9.68667 -9.22034 -9.03087 -8.67630 -7.62973 -7.51831 -6.80193 -4.41210 2.21107 2.80861 3.04595 3.08117 3.12958 3.15173 3.42913 3.80989 3.86984 3.92378 4.39378 4.47016 4.62029 4.63760 4.76570 4.88414 4.91292 5.02349 5.14326 5.20709 5.24462 5.29486 5.40674 5.46191 5.59210 5.61020 5.67549 5.71922 5.80230 6.00357 6.04715 6.12753 6.28133 6.72061 6.82555 6.93775 6.99142 7.02360 7.21404 7.38316 7.70437 7.76094 7.92863 8.09280 8.19250 8.50953 8.80405 8.83642 8.94766 10.14570 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.031474 B = 0.002033 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.423463 B =13767.851954 C =14490.666627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.459 4.459 8 H 0.082 0.918 9 C 0.098 3.902 10 C -0.211 4.211 11 C -0.098 4.098 12 C -0.218 4.218 13 C -0.128 4.128 14 C 0.564 3.436 15 O -0.547 6.547 16 N -0.737 5.737 17 C 0.125 3.875 18 C -0.130 4.130 19 C 0.067 3.933 20 O -0.386 6.386 21 C 0.093 3.907 22 C -0.154 4.154 23 C -0.178 4.178 24 C -0.175 4.175 25 C -0.093 4.093 26 H 0.284 0.716 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.400 0.600 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.398 -13.236 -10.404 20.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.095 3.905 10 C -0.231 4.231 11 C -0.116 4.116 12 C -0.238 4.238 13 C -0.132 4.132 14 C 0.355 3.645 15 O -0.425 6.425 16 N -0.391 5.391 17 C 0.000 4.000 18 C -0.167 4.167 19 C -0.010 4.010 20 O -0.305 6.305 21 C 0.017 3.983 22 C -0.172 4.172 23 C -0.215 4.215 24 C -0.212 4.212 25 C -0.113 4.113 26 H 0.095 0.905 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.236 0.764 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.132 0.868 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.838 -12.450 -10.611 20.795 hybrid contribution 0.263 0.462 0.108 0.543 sum -12.575 -11.988 -10.503 20.302 Atomic orbital electron populations 1.69797 1.07595 1.29684 1.33667 1.25971 0.94764 1.01578 0.92307 0.86237 0.80898 0.80820 0.78671 1.18320 1.19568 1.19920 1.19620 0.98254 0.91050 1.39907 0.90020 1.17611 0.91198 0.92488 0.89180 1.21104 1.03524 0.92752 1.05757 1.20438 0.95998 0.96749 0.98430 1.20348 1.01263 0.94635 1.07560 1.19471 0.96563 0.95349 1.01779 1.18849 0.83282 0.82777 0.79612 1.90693 1.66323 1.29884 1.55588 1.45902 1.30956 1.09885 1.52390 1.21048 0.88461 0.95486 0.94961 1.21675 0.97203 0.97170 1.00693 1.22354 0.96033 0.83810 0.98799 1.87853 1.45929 1.27427 1.69328 1.21985 0.87874 0.94712 0.93761 1.22153 1.01951 0.96737 0.96372 1.23078 1.00386 1.02158 0.95852 1.22979 0.90714 1.03580 1.03911 1.21639 0.96484 0.96458 0.96705 0.90486 0.88598 0.88870 0.89191 0.76433 0.91727 0.91673 0.90344 0.90356 0.92916 0.92853 0.93158 0.92850 0.86784 0.88644 0.88562 0.88364 0.88650 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.84 10.96 55.55 0.61 -20.23 16 2 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 3 Si 0.91 18.81 29.60 -169.99 -5.03 13.78 16 4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.46 -12.11 9.05 -37.73 -0.34 -12.45 16 8 H 0.08 2.04 7.91 -52.48 -0.42 1.63 16 9 C 0.10 2.60 5.57 -106.87 -0.60 2.00 16 10 C -0.21 -5.04 9.78 -38.81 -0.38 -5.42 16 11 C -0.10 -2.09 10.01 -39.73 -0.40 -2.49 16 12 C -0.22 -4.60 9.55 -38.92 -0.37 -4.97 16 13 C -0.13 -3.06 5.87 -105.04 -0.62 -3.67 16 14 C 0.56 12.45 7.77 -12.31 -0.10 12.36 16 15 O -0.55 -13.84 16.33 5.32 0.09 -13.75 16 16 N -0.74 -12.23 5.51 -61.23 -0.34 -12.57 16 17 C 0.12 1.70 5.67 -4.04 -0.02 1.68 16 18 C -0.13 -1.37 5.70 -26.73 -0.15 -1.52 16 19 C 0.07 0.65 5.94 37.15 0.22 0.87 16 20 O -0.39 -4.13 10.34 -35.23 -0.36 -4.50 16 21 C 0.09 0.78 6.22 37.16 0.23 1.01 16 22 C -0.15 -1.18 6.06 -90.62 -0.55 -1.73 16 23 C -0.18 -1.15 10.18 -26.73 -0.27 -1.43 16 24 C -0.17 -1.04 10.25 -26.73 -0.27 -1.31 16 25 C -0.09 -2.49 8.24 -38.44 -0.32 -2.81 16 26 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 27 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 28 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.09 1.56 6.38 -52.48 -0.33 1.23 16 30 H 0.40 5.74 6.49 -40.82 -0.26 5.47 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.38 7.88 -51.93 -0.41 -0.03 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.10 0.58 8.03 -51.93 -0.42 0.17 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.13 3.88 5.74 -52.49 -0.30 3.58 16 LS Contribution 371.44 15.07 5.60 5.60 Total: -1.00 -30.50 371.44 -10.23 -40.73 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -6.77 Total: 9.05 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -4.02 Total: -18.12 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.27 Total: -32.80 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.28 Total: -18.25 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.50 -10.23 -40.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044987268.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.048 kcal (2) G-P(sol) polarization free energy of solvation -30.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds