Wall clock time and date at job start Tue Mar 31 2020 08:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00047 * 2 1 4 4 H 1.48503 * 109.47283 * 240.00149 * 3 2 1 5 5 H 1.48500 * 109.46853 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47148 * 120.00193 * 3 2 1 7 7 C 1.37882 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00346 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99686 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46702 * 180.02562 * 9 7 2 11 11 O 1.42905 * 109.46746 * 179.97438 * 10 9 7 12 12 C 1.35898 * 116.99746 * 179.97438 * 11 10 9 13 13 C 1.38807 * 120.02105 * 359.72928 * 12 11 10 14 14 C 1.38180 * 120.08390 * 179.73882 * 13 12 11 15 15 C 1.38165 * 120.12164 * 0.51185 * 14 13 12 16 16 C 1.38889 * 120.04133 * 359.76241 * 15 14 13 17 17 N 1.39916 * 120.04009 * 179.97438 * 16 15 14 18 18 C 1.34778 * 120.00273 * 213.33112 * 17 16 15 19 19 O 1.21292 * 119.99887 * 5.28088 * 18 17 16 20 20 C 1.50697 * 120.00403 * 185.27441 * 18 17 16 21 21 C 1.54272 * 110.03161 * 297.90820 * 20 18 17 22 22 C 1.54961 * 104.16157 * 217.13540 * 21 20 18 23 23 C 1.54887 * 102.77643 * 37.88844 * 22 21 20 24 24 C 1.53876 * 110.03329 * 180.69462 * 20 18 17 25 25 C 1.38591 * 120.01900 * 179.97438 * 12 11 10 26 26 H 0.96997 * 120.00561 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47290 * 59.99899 * 9 7 2 28 28 H 1.08997 * 109.47303 * 299.99909 * 9 7 2 29 29 H 1.08997 * 109.47378 * 59.99895 * 10 9 7 30 30 H 1.09002 * 109.46920 * 299.99514 * 10 9 7 31 31 H 1.07998 * 119.96044 * 359.97438 * 13 12 11 32 32 H 1.07998 * 119.93772 * 180.23091 * 14 13 12 33 33 H 1.08003 * 119.97681 * 179.74210 * 15 14 13 34 34 H 0.97001 * 120.00324 * 33.33641 * 17 16 15 35 35 H 1.08994 * 110.01760 * 59.30300 * 20 18 17 36 36 H 1.08997 * 110.48472 * 335.78636 * 21 20 18 37 37 H 1.09000 * 110.48279 * 98.42850 * 21 20 18 38 38 H 1.09000 * 110.72218 * 279.58321 * 22 21 20 39 39 H 1.08992 * 110.92343 * 156.29957 * 22 21 20 40 40 H 1.09003 * 110.48930 * 203.40033 * 23 22 21 41 41 H 1.09007 * 110.60085 * 80.81954 * 23 22 21 42 42 H 1.08996 * 110.03056 * 238.57156 * 24 20 18 43 43 H 1.09004 * 110.02955 * 359.95071 * 24 20 18 44 44 H 1.07993 * 120.06045 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5308 -4.8996 0.0001 12 6 2.2710 -6.0394 -0.0004 13 6 3.6571 -5.9672 -0.0071 14 6 4.4111 -7.1252 -0.0021 15 6 3.7878 -8.3583 -0.0011 16 6 2.4012 -8.4365 -0.0002 17 7 1.7701 -9.6853 0.0003 18 6 0.5953 -9.8469 -0.6403 19 8 0.1324 -8.9381 -1.2967 20 6 -0.1431 -11.1568 -0.5411 21 6 0.7115 -12.2920 -1.1419 22 6 -0.3187 -13.2089 -1.8485 23 6 -1.3270 -12.1954 -2.4447 24 6 -1.4389 -11.0955 -1.3688 25 6 1.6422 -7.2744 0.0007 26 1 -0.4851 0.8400 0.0004 27 1 0.6240 -2.5568 -0.8902 28 1 0.6247 -2.5572 0.8897 29 1 2.8720 -3.6043 0.8894 30 1 2.8719 -3.6043 -0.8906 31 1 4.1471 -5.0047 -0.0123 32 1 5.4894 -7.0663 -0.0036 33 1 4.3794 -9.2619 -0.0015 34 1 2.1780 -10.4347 0.4616 35 1 -0.3757 -11.3760 0.5010 36 1 1.4241 -11.8922 -1.8633 37 1 1.2305 -12.8370 -0.3534 38 1 -0.8096 -13.8639 -1.1288 39 1 0.1558 -13.7915 -2.6380 40 1 -2.2946 -12.6703 -2.6069 41 1 -0.9463 -11.7792 -3.3775 42 1 -2.3002 -11.2858 -0.7285 43 1 -1.5340 -10.1180 -1.8415 44 1 0.5639 -7.3325 0.0023 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048653670.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:47:31 Heat of formation + Delta-G solvation = -71.449223 kcal Electronic energy + Delta-G solvation = -23689.929266 eV Core-core repulsion = 20185.448894 eV Total energy + Delta-G solvation = -3504.480372 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.88697 -39.48225 -37.81648 -36.83134 -34.61105 -33.32691 -30.90381 -30.39612 -29.23332 -29.03974 -28.50036 -25.03975 -23.58108 -22.26041 -21.80749 -21.09039 -20.37968 -19.73603 -18.33404 -17.62144 -16.44640 -16.19359 -15.85525 -15.62863 -15.47776 -15.26967 -14.89191 -14.77209 -14.42502 -13.86696 -13.63592 -13.45333 -12.97419 -12.72235 -12.29617 -12.07266 -11.84918 -11.70720 -11.64434 -11.48799 -11.44253 -11.36717 -11.17975 -10.89432 -10.84603 -10.79783 -10.53518 -10.29793 -9.81780 -9.79782 -9.62228 -9.28066 -8.42473 -8.22877 -7.80390 -6.07146 -4.11970 1.36547 1.65299 2.48277 2.82925 3.30639 3.34826 3.36715 3.85234 3.98280 4.08296 4.20401 4.36000 4.44386 4.78721 4.96146 5.00913 5.08213 5.11451 5.19922 5.21879 5.28897 5.30324 5.38481 5.40589 5.47910 5.56633 5.69011 5.74577 5.76956 5.90657 5.98267 6.05945 6.07359 6.08300 6.30892 6.38140 6.54629 6.61568 6.77180 7.00103 7.23896 7.54264 7.68174 7.84269 7.97141 8.10251 8.26944 8.93433 9.51974 11.04424 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.024266 B = 0.002461 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.623317 B =11376.595255 C =12348.611115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.065 3.935 11 O -0.312 6.312 12 C 0.165 3.835 13 C -0.226 4.226 14 C -0.061 4.061 15 C -0.197 4.197 16 C 0.178 3.822 17 N -0.672 5.672 18 C 0.514 3.486 19 O -0.507 6.507 20 C -0.111 4.111 21 C -0.117 4.117 22 C -0.123 4.123 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.164 4.164 26 H 0.264 0.736 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.132 0.868 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.409 0.591 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.843 -28.513 -0.045 28.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.009 4.009 11 O -0.225 6.225 12 C 0.117 3.883 13 C -0.246 4.246 14 C -0.080 4.080 15 C -0.218 4.218 16 C 0.084 3.916 17 N -0.317 5.317 18 C 0.301 3.699 19 O -0.380 6.380 20 C -0.133 4.133 21 C -0.155 4.155 22 C -0.161 4.161 23 C -0.162 4.162 24 C -0.159 4.159 25 C -0.185 4.185 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.150 0.850 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.245 0.755 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.111 0.889 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.060 -27.718 -0.522 27.891 hybrid contribution 0.954 0.658 0.308 1.200 sum 4.015 -27.059 -0.214 27.356 Atomic orbital electron populations 1.69967 1.06103 1.27068 1.49601 1.24997 0.94909 0.99374 0.94944 0.86541 0.79483 0.82604 0.78693 1.20091 1.21130 1.20109 1.20933 0.92994 0.90210 1.52344 0.92401 1.19127 0.94194 0.88979 0.98928 1.23352 0.97099 0.80758 0.99695 1.86194 1.36515 1.13144 1.86661 1.18956 0.89875 0.87291 0.92215 1.21386 0.93085 0.99961 1.10118 1.20663 0.99373 0.91266 0.96684 1.20612 0.92098 0.98248 1.10829 1.17303 0.91065 0.84298 0.98942 1.43493 1.22989 1.11082 1.54170 1.20830 0.80600 0.90224 0.78243 1.90766 1.65932 1.42714 1.38610 1.21982 0.96638 0.92129 1.02534 1.22407 0.97770 0.95210 1.00139 1.22503 0.96512 0.97349 0.99713 1.22371 0.99364 0.95916 0.98598 1.22196 0.94997 1.01564 0.97165 1.20254 1.01100 0.88657 1.08514 0.92650 0.95340 0.95396 0.93051 0.93043 0.85039 0.85709 0.86151 0.75497 0.88006 0.90994 0.90745 0.91190 0.91267 0.91400 0.91416 0.91193 0.88931 0.84337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -14.96 9.11 -34.44 -0.31 -15.27 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.67 5.34 -27.88 -0.15 0.52 16 10 C 0.06 1.45 4.68 37.16 0.17 1.62 16 11 O -0.31 -6.90 10.13 -19.42 -0.20 -7.10 16 12 C 0.16 3.10 6.68 -39.24 -0.26 2.84 16 13 C -0.23 -3.65 9.04 -39.39 -0.36 -4.00 16 14 C -0.06 -0.80 10.03 -39.63 -0.40 -1.19 16 15 C -0.20 -2.39 9.96 -39.37 -0.39 -2.78 16 16 C 0.18 2.46 6.28 -83.72 -0.53 1.93 16 17 N -0.67 -6.97 5.29 -9.88 -0.05 -7.03 16 18 C 0.51 6.03 6.74 -10.99 -0.07 5.96 16 19 O -0.51 -8.37 12.90 5.55 0.07 -8.30 16 20 C -0.11 -0.87 3.30 -90.65 -0.30 -1.17 16 21 C -0.12 -0.69 6.23 -25.03 -0.16 -0.84 16 22 C -0.12 -0.69 6.91 -24.70 -0.17 -0.86 16 23 C -0.12 -0.89 6.83 -25.07 -0.17 -1.06 16 24 C -0.12 -1.05 6.40 -25.61 -0.16 -1.22 16 25 C -0.16 -2.87 8.59 -39.25 -0.34 -3.21 16 26 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.05 1.07 7.67 -51.93 -0.40 0.67 16 30 H 0.05 1.09 7.65 -51.93 -0.40 0.69 16 31 H 0.13 2.06 6.29 -52.49 -0.33 1.73 16 32 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 34 H 0.41 2.62 8.73 -40.82 -0.36 2.26 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.49 7.85 -51.93 -0.41 0.09 16 37 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 1.07 6.39 -51.93 -0.33 0.74 16 44 H 0.14 2.62 6.42 -52.49 -0.34 2.29 16 LS Contribution 360.49 15.07 5.43 5.43 Total: -1.00 -33.65 360.49 -9.47 -43.12 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.75 Total: 0.63 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -3.69 Total: -17.09 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: 0.68 Total: -33.24 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.13 Total: -15.39 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.65 -9.47 -43.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048653670.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.332 kcal (2) G-P(sol) polarization free energy of solvation -33.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds