Wall clock time and date at job start Tue Mar 31 2020 08:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00047 * 2 1 4 4 H 1.48503 * 109.47283 * 240.00149 * 3 2 1 5 5 H 1.48500 * 109.46853 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47148 * 120.00193 * 3 2 1 7 7 C 1.37882 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00346 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99686 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46702 * 180.02562 * 9 7 2 11 11 O 1.42905 * 109.46746 * 179.97438 * 10 9 7 12 12 C 1.35898 * 116.99746 * 179.97438 * 11 10 9 13 13 C 1.38807 * 120.02105 * 359.72928 * 12 11 10 14 14 C 1.38180 * 120.08390 * 179.73882 * 13 12 11 15 15 C 1.38165 * 120.12164 * 0.51185 * 14 13 12 16 16 C 1.38889 * 120.04133 * 359.76241 * 15 14 13 17 17 N 1.39916 * 120.04009 * 179.97438 * 16 15 14 18 18 C 1.34778 * 120.00273 * 213.33112 * 17 16 15 19 19 O 1.21292 * 119.99887 * 5.28088 * 18 17 16 20 20 C 1.50697 * 120.00403 * 185.27441 * 18 17 16 21 21 C 1.54272 * 110.03161 * 297.90820 * 20 18 17 22 22 C 1.54961 * 104.16157 * 217.13540 * 21 20 18 23 23 C 1.54887 * 102.77643 * 37.88844 * 22 21 20 24 24 C 1.53876 * 110.03329 * 180.69462 * 20 18 17 25 25 C 1.38591 * 120.01900 * 179.97438 * 12 11 10 26 26 H 0.96997 * 120.00561 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47290 * 59.99899 * 9 7 2 28 28 H 1.08997 * 109.47303 * 299.99909 * 9 7 2 29 29 H 1.08997 * 109.47378 * 59.99895 * 10 9 7 30 30 H 1.09002 * 109.46920 * 299.99514 * 10 9 7 31 31 H 1.07998 * 119.96044 * 359.97438 * 13 12 11 32 32 H 1.07998 * 119.93772 * 180.23091 * 14 13 12 33 33 H 1.08003 * 119.97681 * 179.74210 * 15 14 13 34 34 H 0.97001 * 120.00324 * 33.33641 * 17 16 15 35 35 H 1.08994 * 110.01760 * 59.30300 * 20 18 17 36 36 H 1.08997 * 110.48472 * 335.78636 * 21 20 18 37 37 H 1.09000 * 110.48279 * 98.42850 * 21 20 18 38 38 H 1.09000 * 110.72218 * 279.58321 * 22 21 20 39 39 H 1.08992 * 110.92343 * 156.29957 * 22 21 20 40 40 H 1.09003 * 110.48930 * 203.40033 * 23 22 21 41 41 H 1.09007 * 110.60085 * 80.81954 * 23 22 21 42 42 H 1.08996 * 110.03056 * 238.57156 * 24 20 18 43 43 H 1.09004 * 110.02955 * 359.95071 * 24 20 18 44 44 H 1.07993 * 120.06045 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5308 -4.8996 0.0001 12 6 2.2710 -6.0394 -0.0004 13 6 3.6571 -5.9672 -0.0071 14 6 4.4111 -7.1252 -0.0021 15 6 3.7878 -8.3583 -0.0011 16 6 2.4012 -8.4365 -0.0002 17 7 1.7701 -9.6853 0.0003 18 6 0.5953 -9.8469 -0.6403 19 8 0.1324 -8.9381 -1.2967 20 6 -0.1431 -11.1568 -0.5411 21 6 0.7115 -12.2920 -1.1419 22 6 -0.3187 -13.2089 -1.8485 23 6 -1.3270 -12.1954 -2.4447 24 6 -1.4389 -11.0955 -1.3688 25 6 1.6422 -7.2744 0.0007 26 1 -0.4851 0.8400 0.0004 27 1 0.6240 -2.5568 -0.8902 28 1 0.6247 -2.5572 0.8897 29 1 2.8720 -3.6043 0.8894 30 1 2.8719 -3.6043 -0.8906 31 1 4.1471 -5.0047 -0.0123 32 1 5.4894 -7.0663 -0.0036 33 1 4.3794 -9.2619 -0.0015 34 1 2.1780 -10.4347 0.4616 35 1 -0.3757 -11.3760 0.5010 36 1 1.4241 -11.8922 -1.8633 37 1 1.2305 -12.8370 -0.3534 38 1 -0.8096 -13.8639 -1.1288 39 1 0.1558 -13.7915 -2.6380 40 1 -2.2946 -12.6703 -2.6069 41 1 -0.9463 -11.7792 -3.3775 42 1 -2.3002 -11.2858 -0.7285 43 1 -1.5340 -10.1180 -1.8415 44 1 0.5639 -7.3325 0.0023 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048653670.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:47:31 Heat of formation + Delta-G solvation = -92.415035 kcal Electronic energy + Delta-G solvation = -23690.838412 eV Core-core repulsion = 20185.448894 eV Total energy + Delta-G solvation = -3505.389518 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.88894 -40.76072 -38.86735 -37.82673 -35.79631 -35.37292 -32.62520 -31.47123 -30.65657 -29.63463 -29.35981 -27.02449 -24.71401 -23.58656 -23.16329 -21.93409 -21.49900 -20.58724 -19.64797 -18.57915 -18.32409 -17.25579 -17.00912 -16.89948 -16.80323 -16.63725 -16.39738 -15.75136 -15.69777 -14.69402 -14.53841 -14.41028 -14.34719 -14.29598 -14.22461 -13.37944 -13.25796 -12.75159 -12.74159 -12.65404 -12.59299 -12.34631 -12.19539 -12.03674 -11.94674 -11.79028 -11.66712 -11.61603 -11.46110 -11.43068 -11.24660 -10.81128 -10.63573 -9.44658 -9.03681 -8.27935 -6.42680 0.20865 0.46152 1.39550 1.44545 1.52446 1.53611 1.90775 2.29078 2.51806 2.80737 3.06026 3.43364 3.62602 3.77096 3.88808 4.12740 4.18013 4.20777 4.23925 4.24035 4.42681 4.44559 4.52261 4.53223 4.57875 4.64272 4.69143 4.76504 4.80666 4.98897 5.08719 5.21118 5.22866 5.25511 5.26081 5.30501 5.37838 5.41776 5.42357 5.46520 5.49461 5.66272 5.89804 6.04585 6.38951 6.53515 6.71968 7.10931 7.27568 8.85367 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.024266 B = 0.002461 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.623317 B =11376.595255 C =12348.611115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.980 3.020 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.074 0.926 9 C 0.027 3.973 10 C 0.085 3.915 11 O -0.347 6.347 12 C 0.123 3.877 13 C -0.235 4.235 14 C -0.052 4.052 15 C -0.175 4.175 16 C 0.178 3.822 17 N -0.655 5.655 18 C 0.508 3.492 19 O -0.564 6.564 20 C -0.104 4.104 21 C -0.112 4.112 22 C -0.117 4.117 23 C -0.127 4.127 24 C -0.128 4.128 25 C -0.189 4.189 26 H 0.267 0.733 27 H -0.007 1.007 28 H -0.003 1.003 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.133 0.867 32 H 0.167 0.833 33 H 0.170 0.830 34 H 0.433 0.567 35 H 0.129 0.871 36 H 0.060 0.940 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.050 0.950 42 H 0.080 0.920 43 H 0.053 0.947 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.358 -31.183 0.751 32.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.200 4.200 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.092 0.908 9 C -0.010 4.010 10 C 0.011 3.989 11 O -0.261 6.261 12 C 0.077 3.923 13 C -0.255 4.255 14 C -0.070 4.070 15 C -0.195 4.195 16 C 0.083 3.917 17 N -0.302 5.302 18 C 0.298 3.702 19 O -0.441 6.441 20 C -0.125 4.125 21 C -0.150 4.150 22 C -0.155 4.155 23 C -0.164 4.164 24 C -0.166 4.166 25 C -0.210 4.210 26 H 0.076 0.924 27 H 0.012 0.988 28 H 0.015 0.985 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.151 0.849 32 H 0.185 0.815 33 H 0.187 0.813 34 H 0.273 0.727 35 H 0.147 0.853 36 H 0.079 0.921 37 H 0.126 0.874 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.069 0.931 42 H 0.099 0.901 43 H 0.071 0.929 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.608 -30.461 0.298 31.171 hybrid contribution -0.184 1.323 0.045 1.336 sum 6.425 -29.138 0.343 29.840 Atomic orbital electron populations 1.70131 1.08221 1.28364 1.50521 1.26123 0.95856 1.03943 0.94063 0.85275 0.78050 0.76811 0.79545 1.18733 1.20802 1.18564 1.21365 0.93907 0.90788 1.52322 0.90779 1.18979 0.94607 0.91684 0.95743 1.22902 0.95380 0.79900 1.00747 1.86097 1.37887 1.13999 1.88150 1.19268 0.91292 0.86236 0.95475 1.21534 0.91795 1.01623 1.10511 1.21164 1.01234 0.90203 0.94411 1.21144 0.91165 0.99888 1.07299 1.17468 0.92000 0.84346 0.97846 1.43413 1.22567 1.10576 1.53656 1.21660 0.80547 0.90943 0.77041 1.90765 1.67273 1.44939 1.41156 1.22077 0.95870 0.90465 1.04078 1.22449 0.97384 0.94333 1.00791 1.22510 0.95837 0.96909 1.00227 1.22382 1.00622 0.95981 0.97450 1.22218 0.96294 1.00120 0.97954 1.20233 1.00127 0.90029 1.10647 0.92417 0.98825 0.98505 0.91610 0.92073 0.84917 0.81541 0.81268 0.72695 0.85269 0.92086 0.87390 0.89460 0.90367 0.90452 0.93093 0.90085 0.92871 0.87409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.71 13.29 21.45 0.28 -58.43 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 3 Si 0.98 44.44 29.54 68.60 2.03 46.47 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.55 -31.84 9.11 25.60 0.23 -31.61 16 8 H 0.07 3.98 7.74 -2.91 -0.02 3.96 16 9 C 0.03 1.57 5.34 29.85 0.16 1.73 16 10 C 0.08 3.98 4.68 71.98 0.34 4.32 16 11 O -0.35 -16.57 10.13 -92.40 -0.94 -17.51 16 12 C 0.12 4.88 6.68 22.49 0.15 5.03 16 13 C -0.24 -7.43 9.04 22.39 0.20 -7.23 16 14 C -0.05 -1.16 10.03 22.24 0.22 -0.94 16 15 C -0.17 -3.52 9.96 22.41 0.22 -3.30 16 16 C 0.18 4.71 6.28 38.14 0.24 4.95 16 17 N -0.66 -12.39 5.29 -303.55 -1.61 -13.99 16 18 C 0.51 11.96 6.74 87.66 0.59 12.55 16 19 O -0.56 -20.13 12.90 -3.07 -0.04 -20.17 16 20 C -0.10 -1.47 3.30 -10.81 -0.04 -1.50 16 21 C -0.11 -0.95 6.23 31.70 0.20 -0.75 16 22 C -0.12 -0.97 6.91 31.91 0.22 -0.75 16 23 C -0.13 -1.73 6.83 31.67 0.22 -1.52 16 24 C -0.13 -2.26 6.40 31.32 0.20 -2.06 16 25 C -0.19 -6.98 8.59 22.49 0.19 -6.79 16 26 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 27 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 28 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 29 H 0.07 2.83 7.67 -2.39 -0.02 2.81 16 30 H 0.06 2.69 7.65 -2.39 -0.02 2.67 16 31 H 0.13 4.06 6.29 -2.91 -0.02 4.04 16 32 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.43 3.87 8.73 -92.71 -0.81 3.06 16 35 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 0.68 7.85 -2.39 -0.02 0.66 16 37 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.05 1.38 6.39 -2.39 -0.02 1.37 16 44 H 0.11 4.56 6.42 -2.91 -0.02 4.54 16 Total: -1.00 -81.07 360.49 3.73 -77.34 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.19 Total: 13.79 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: 3.81 Total: -27.49 kcal Atomic # 7 Polarization: -71.10 SS G_CDS: -1.32 Total: -72.42 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -0.98 Total: -37.68 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -81.07 3.73 -77.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048653670.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.075 kcal (2) G-P(sol) polarization free energy of solvation -81.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds