Wall clock time and date at job start Tue Mar 31 2020 08:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46637 * 179.97438 * 9 7 2 11 11 O 1.42902 * 109.46994 * 180.02562 * 10 9 7 12 12 C 1.35898 * 117.00159 * 179.97438 * 11 10 9 13 13 C 1.38812 * 120.01811 * 0.02562 * 12 11 10 14 14 C 1.38165 * 120.09360 * 179.97438 * 13 12 11 15 15 C 1.38162 * 120.13139 * 0.02562 * 14 13 12 16 16 C 1.38933 * 120.02925 * 359.97438 * 15 14 13 17 17 N 1.39674 * 120.04131 * 180.02562 * 16 15 14 18 18 C 1.46495 * 120.00140 * 359.97438 * 17 16 15 19 19 C 1.53002 * 109.47111 * 180.02562 * 18 17 16 20 20 H 1.08991 * 109.70777 * 304.42286 * 19 18 17 21 21 C 1.53500 * 109.70806 * 183.79325 * 19 18 17 22 22 C 1.53262 * 108.14833 * 177.90322 * 21 19 18 23 23 C 1.50446 * 109.43779 * 46.83570 * 22 21 19 24 24 C 1.30682 * 122.49546 * 342.52611 * 23 22 21 25 25 O 1.35137 * 123.34545 * 0.40651 * 24 23 22 26 26 C 1.38576 * 120.01847 * 179.72004 * 12 11 10 27 27 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 28 28 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 29 29 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 30 30 H 1.09000 * 109.47266 * 299.99671 * 10 9 7 31 31 H 1.08997 * 109.46955 * 60.00501 * 10 9 7 32 32 H 1.08007 * 119.95015 * 359.97438 * 13 12 11 33 33 H 1.08008 * 119.93928 * 180.02562 * 14 13 12 34 34 H 1.07995 * 119.98426 * 180.02562 * 15 14 13 35 35 H 0.96997 * 119.99316 * 180.02562 * 17 16 15 36 36 H 1.08997 * 109.47694 * 300.00894 * 18 17 16 37 37 H 1.09004 * 109.47041 * 60.00543 * 18 17 16 38 38 H 1.08998 * 109.72664 * 297.58199 * 21 19 18 39 39 H 1.09002 * 109.72248 * 58.24879 * 21 19 18 40 40 H 1.09002 * 109.47422 * 286.85115 * 22 21 19 41 41 H 1.08999 * 109.48627 * 166.83273 * 22 21 19 42 42 H 1.08005 * 118.74948 * 162.49876 * 23 22 21 43 43 H 1.08003 * 118.32748 * 180.43214 * 24 23 22 44 44 H 1.07999 * 120.06357 * 0.02977 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 8 1.5309 -4.8996 -0.0001 12 6 2.2710 -6.0394 -0.0007 13 6 3.6572 -5.9672 -0.0002 14 6 4.4113 -7.1249 -0.0003 15 6 3.7885 -8.3582 -0.0014 16 6 2.4013 -8.4366 -0.0019 17 7 1.7715 -9.6833 -0.0025 18 6 2.5735 -10.9092 -0.0032 19 6 1.6455 -12.1257 -0.0044 20 1 0.9612 -12.0668 0.8418 21 6 2.4780 -13.4119 0.0905 22 6 1.5137 -14.6021 0.1397 23 6 0.4677 -14.4435 -0.9299 24 6 0.2304 -13.2998 -1.5158 25 8 0.9011 -12.1631 -1.2253 26 6 1.6423 -7.2743 0.0046 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5567 0.8902 29 1 0.6248 -2.5571 -0.8897 30 1 2.8720 -3.6043 -0.8895 31 1 2.8719 -3.6043 0.8905 32 1 4.1471 -5.0046 0.0003 33 1 5.4897 -7.0659 0.0005 34 1 4.3802 -9.2617 -0.0011 35 1 0.8030 -9.7372 -0.0033 36 1 3.2025 -10.9315 -0.8931 37 1 3.2024 -10.9324 0.8868 38 1 3.1240 -13.4973 -0.7833 39 1 3.0841 -13.3918 0.9962 40 1 1.0318 -14.6392 1.1167 41 1 2.0676 -15.5259 -0.0277 42 1 -0.1088 -15.3079 -1.2250 43 1 -0.5413 -13.2609 -2.2704 44 1 0.5639 -7.3323 0.0087 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050269274.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:47:25 Heat of formation + Delta-G solvation = -48.240718 kcal Electronic energy + Delta-G solvation = -23143.928714 eV Core-core repulsion = 19640.454739 eV Total energy + Delta-G solvation = -3503.473976 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.62991 -39.65726 -37.71587 -35.32182 -34.38019 -33.32122 -32.36472 -30.79000 -29.58155 -28.65640 -26.96414 -24.99843 -24.24450 -23.36032 -22.39646 -21.34551 -20.29339 -19.42007 -17.98536 -17.36512 -16.59906 -16.32740 -16.16268 -15.63388 -15.27312 -15.22250 -15.00271 -14.57512 -14.48575 -14.23437 -14.01818 -13.40032 -13.37454 -13.18233 -12.83281 -12.59533 -12.50570 -12.28622 -11.55283 -11.51432 -11.38375 -11.28123 -11.09929 -10.92456 -10.87757 -10.71129 -10.40337 -9.98944 -9.69279 -9.60596 -9.25685 -8.83378 -8.41808 -7.90560 -7.30800 -6.07019 -4.11293 1.75216 1.88043 1.90815 2.92388 3.20234 3.29849 3.35752 3.38926 4.02680 4.13958 4.15971 4.28137 4.42798 4.45663 4.61481 4.75093 4.88266 5.08667 5.11724 5.13764 5.21863 5.29332 5.35504 5.40180 5.40556 5.58355 5.59930 5.64217 5.81783 5.85444 6.09319 6.12085 6.12963 6.15261 6.43216 6.65842 6.69941 6.78138 6.92505 7.16670 7.39775 7.55844 7.69016 7.69244 7.87270 8.15782 8.28634 8.94410 9.52700 11.04590 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.038765 B = 0.001985 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.136089 B =14099.356623 C =14662.287659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.066 3.934 11 O -0.316 6.316 12 C 0.188 3.812 13 C -0.264 4.264 14 C -0.037 4.037 15 C -0.246 4.246 16 C 0.247 3.753 17 N -0.746 5.746 18 C 0.138 3.862 19 C 0.078 3.922 20 H 0.078 0.922 21 C -0.153 4.153 22 C -0.081 4.081 23 C -0.287 4.287 24 C 0.058 3.942 25 O -0.316 6.316 26 C -0.237 4.237 27 H 0.263 0.737 28 H 0.028 0.972 29 H 0.027 0.973 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.126 0.874 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.402 0.598 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.120 0.880 43 H 0.157 0.843 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.025 -29.996 0.250 30.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.008 4.008 11 O -0.229 6.229 12 C 0.140 3.860 13 C -0.284 4.284 14 C -0.056 4.056 15 C -0.268 4.268 16 C 0.145 3.855 17 N -0.377 5.377 18 C 0.013 3.987 19 C 0.022 3.978 20 H 0.096 0.904 21 C -0.191 4.191 22 C -0.118 4.118 23 C -0.307 4.307 24 C -0.005 4.005 25 O -0.230 6.230 26 C -0.260 4.260 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.144 0.856 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.237 0.763 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.138 0.862 43 H 0.174 0.826 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.812 -29.798 0.147 30.184 hybrid contribution 0.220 0.661 0.077 0.701 sum 5.032 -29.137 0.224 29.569 Atomic orbital electron populations 1.69980 1.06095 1.26907 1.49818 1.24997 0.94907 0.99373 0.94976 0.86485 0.79738 0.82953 0.78191 1.20523 1.21081 1.19765 1.20986 0.93069 0.90232 1.52062 0.92342 1.19129 0.94219 0.89086 0.98832 1.23313 0.96984 0.80732 0.99748 1.86148 1.36751 1.13297 1.86695 1.18819 0.89860 0.86809 0.90541 1.21148 0.93003 0.99620 1.14659 1.20609 0.98975 0.91454 0.94521 1.20367 0.92176 0.97869 1.16410 1.17332 0.91479 0.84452 0.92278 1.44419 1.08221 1.01799 1.83247 1.21315 0.93108 0.82010 1.02272 1.22746 0.93456 0.95292 0.86355 0.90373 1.22211 0.98531 0.94304 1.04016 1.20331 0.95346 0.98224 0.97867 1.22520 1.04853 0.98087 1.05192 1.22054 0.94622 0.85101 0.98737 1.86006 1.61633 1.35446 1.39869 1.19662 0.99675 0.88868 1.17788 0.92750 0.95409 0.95441 0.93098 0.93084 0.85578 0.86360 0.86779 0.76338 0.91293 0.90395 0.90234 0.89754 0.91135 0.90461 0.86198 0.82589 0.85752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.53 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16 10 C 0.07 1.47 4.68 37.16 0.17 1.64 16 11 O -0.32 -6.80 10.13 -19.42 -0.20 -7.00 16 12 C 0.19 3.47 6.68 -39.24 -0.26 3.20 16 13 C -0.26 -4.38 9.04 -39.40 -0.36 -4.74 16 14 C -0.04 -0.51 10.03 -39.64 -0.40 -0.91 16 15 C -0.25 -3.20 9.31 -39.35 -0.37 -3.56 16 16 C 0.25 3.39 6.65 -83.81 -0.56 2.83 16 17 N -0.75 -7.99 5.68 -58.65 -0.33 -8.32 16 18 C 0.14 1.11 4.61 -4.04 -0.02 1.10 16 19 C 0.08 0.56 2.89 -26.47 -0.08 0.49 16 20 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 21 C -0.15 -0.86 5.55 -26.34 -0.15 -1.01 16 22 C -0.08 -0.45 6.23 -27.87 -0.17 -0.63 16 23 C -0.29 -1.88 9.97 -36.06 -0.36 -2.23 16 24 C 0.06 0.43 10.88 29.10 0.32 0.74 16 25 O -0.32 -2.86 10.00 -17.11 -0.17 -3.03 16 26 C -0.24 -3.84 9.83 -39.24 -0.39 -4.22 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16 31 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16 32 H 0.13 2.07 6.29 -52.48 -0.33 1.74 16 33 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.11 1.20 6.73 -52.49 -0.35 0.85 16 35 H 0.40 4.07 8.48 -40.82 -0.35 3.72 16 36 H 0.07 0.59 7.95 -51.93 -0.41 0.18 16 37 H 0.08 0.54 7.95 -51.93 -0.41 0.13 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 43 H 0.16 0.85 8.06 -52.48 -0.42 0.42 16 44 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 364.20 15.07 5.49 5.49 Total: -1.00 -31.77 364.20 -9.51 -41.28 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.84 Total: 1.50 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -3.17 Total: -20.36 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.40 Total: -34.35 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.37 Total: -10.03 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.77 -9.51 -41.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050269274.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.962 kcal (2) G-P(sol) polarization free energy of solvation -31.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds