Wall clock time and date at job start Tue Mar 31 2020 08:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86804 * 119.99878 * 2 1 4 4 H 1.48504 * 109.47260 * 269.99872 * 3 2 1 5 5 H 1.48500 * 109.47117 * 29.99876 * 3 2 1 6 6 H 1.48500 * 109.47287 * 150.00109 * 3 2 1 7 7 C 1.38631 * 120.00562 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99252 * 0.02562 * 7 2 1 9 9 O 1.34804 * 120.00508 * 179.97438 * 7 2 1 10 10 C 1.35776 * 117.00208 * 174.96367 * 9 7 2 11 11 C 1.38910 * 119.99709 * 5.33840 * 10 9 7 12 12 C 1.38004 * 120.00072 * 180.02562 * 11 10 9 13 13 C 1.38920 * 119.99852 * 359.97253 * 12 11 10 14 14 N 1.39995 * 120.00132 * 179.97438 * 13 12 11 15 15 C 1.34770 * 119.99913 * 144.92016 * 14 13 12 16 16 O 1.21292 * 120.00016 * 4.23645 * 15 14 13 17 17 C 1.50702 * 119.99761 * 184.22977 * 15 14 13 18 18 C 1.54241 * 108.89780 * 301.39672 * 17 15 14 19 19 C 1.50559 * 108.48144 * 159.17818 * 18 17 15 20 20 C 1.54065 * 112.41292 * 94.27121 * 19 18 17 21 21 C 1.54070 * 112.81672 * 318.27586 * 20 19 18 22 22 C 1.50473 * 112.49497 * 318.28740 * 21 20 19 23 23 C 1.45543 * 108.89287 * 178.60758 * 17 15 14 24 24 C 1.38916 * 119.99734 * 0.26113 * 13 12 11 25 25 C 1.37997 * 119.99756 * 359.50757 * 24 13 12 26 26 H 0.96999 * 120.00297 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.00203 * 0.02562 * 11 10 9 28 28 H 1.08005 * 120.00034 * 179.97438 * 12 11 10 29 29 H 0.96999 * 119.99656 * 324.64936 * 14 13 12 30 30 H 1.09000 * 108.87423 * 60.01148 * 17 15 14 31 31 H 1.09000 * 109.63249 * 278.97348 * 18 17 15 32 32 H 1.09002 * 109.62891 * 39.55799 * 18 17 15 33 33 H 1.09000 * 108.92477 * 333.51433 * 19 18 17 34 34 H 1.09000 * 108.91709 * 215.01950 * 19 18 17 35 35 H 1.09005 * 108.81548 * 197.41658 * 20 19 18 36 36 H 1.09000 * 108.73080 * 79.07958 * 20 19 18 37 37 H 1.08997 * 108.87926 * 197.51055 * 21 20 19 38 38 H 1.09001 * 108.87622 * 79.06697 * 21 20 19 39 39 H 1.08997 * 109.63098 * 334.44148 * 22 21 20 40 40 H 1.08999 * 109.62934 * 213.85995 * 22 21 20 41 41 H 1.09001 * 108.89933 * 303.44546 * 23 17 15 42 42 H 1.09002 * 108.89777 * 62.03480 * 23 17 15 43 43 H 1.08001 * 120.00354 * 179.72331 * 24 13 12 44 44 H 1.08000 * 120.00205 * 180.20932 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4403 0.7000 7 6 2.0090 -1.2005 -0.0005 8 1 1.4689 -2.1359 -0.0014 9 8 3.3570 -1.2005 -0.0011 10 6 3.9735 -2.4056 0.1046 11 6 3.2216 -3.5736 0.0952 12 6 3.8481 -4.7985 0.2032 13 6 5.2308 -4.8634 0.3207 14 7 5.8663 -6.1059 0.4307 15 6 7.0749 -6.2970 -0.1341 16 8 7.6464 -5.3717 -0.6714 17 6 7.7165 -7.6602 -0.0982 18 6 7.8789 -8.0972 1.3721 19 6 8.0226 -9.5954 1.4116 20 6 9.4964 -10.0442 1.4163 21 6 10.3720 -9.2300 0.4445 22 6 9.6874 -8.9744 -0.8709 23 6 8.9895 -7.6006 -0.8011 24 6 5.9823 -3.6952 0.3350 25 6 5.3561 -2.4706 0.2222 26 1 -0.4850 0.8400 -0.0004 27 1 2.1467 -3.5231 0.0034 28 1 3.2634 -5.7065 0.1963 29 1 5.4386 -6.8281 0.9169 30 1 7.0649 -8.3701 -0.6076 31 1 8.7682 -7.6311 1.7966 32 1 6.9987 -7.7996 1.9420 33 1 7.5270 -10.0212 0.5392 34 1 7.5360 -9.9734 2.3107 35 1 9.5444 -11.0963 1.1353 36 1 9.8933 -9.9319 2.4252 37 1 11.2967 -9.7769 0.2603 38 1 10.6163 -8.2736 0.9068 39 1 8.9467 -9.7524 -1.0555 40 1 10.4254 -8.9698 -1.6730 41 1 8.8162 -7.2408 -1.8154 42 1 9.6451 -6.8990 -0.2854 43 1 7.0568 -3.7454 0.4308 44 1 5.9406 -1.5625 0.2299 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053714529.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:44:12 Heat of formation + Delta-G solvation = -53.795922 kcal Electronic energy + Delta-G solvation = -24196.174602 eV Core-core repulsion = 20692.459735 eV Total energy + Delta-G solvation = -3503.714867 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.76441 -39.19250 -38.19078 -36.56408 -34.12818 -32.81746 -32.42618 -32.23101 -30.30047 -28.24566 -25.76203 -25.22250 -24.78272 -22.42393 -22.13857 -20.81846 -19.90123 -19.59242 -17.99810 -17.66115 -17.26738 -16.43487 -16.01056 -15.36628 -14.91028 -14.76085 -14.37495 -14.08029 -13.91883 -13.74383 -13.55485 -13.51939 -13.33083 -12.80915 -12.56504 -12.46246 -12.29419 -12.23591 -11.81604 -11.62482 -11.44703 -11.08786 -10.97579 -10.91831 -10.88857 -10.78568 -10.66645 -10.50855 -10.17035 -9.66808 -9.54247 -9.28737 -8.77298 -8.28919 -7.05538 -6.41549 -4.07409 1.99757 2.12036 2.80059 3.23542 3.24414 3.27239 3.41923 4.24605 4.28306 4.35797 4.45174 4.49339 4.75846 4.77276 4.85058 4.88807 4.91987 5.01060 5.08824 5.11088 5.27549 5.46814 5.49358 5.54704 5.60114 5.71762 5.72905 5.82084 5.84791 5.86446 5.92815 6.03954 6.05843 6.08659 6.13138 6.17485 6.23967 6.68969 6.75353 6.93997 7.08797 7.23088 7.58989 7.65809 7.79004 8.02615 8.34144 8.93846 9.56565 10.66001 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.041962 B = 0.002535 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.117129 B =11043.757755 C =11386.724596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.389 4.389 8 H 0.106 0.894 9 O -0.217 6.217 10 C 0.152 3.848 11 C -0.207 4.207 12 C -0.092 4.092 13 C 0.043 3.957 14 N -0.662 5.662 15 C 0.506 3.494 16 O -0.527 6.527 17 C -0.097 4.097 18 C -0.111 4.111 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.115 4.115 23 C -0.108 4.108 24 C -0.070 4.070 25 C -0.179 4.179 26 H 0.279 0.721 27 H 0.137 0.863 28 H 0.113 0.887 29 H 0.402 0.598 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.130 0.870 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.389 -20.418 2.767 26.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.122 6.122 10 C 0.100 3.900 11 C -0.226 4.226 12 C -0.112 4.112 13 C -0.049 4.049 14 N -0.306 5.306 15 C 0.294 3.706 16 O -0.403 6.403 17 C -0.118 4.118 18 C -0.149 4.149 19 C -0.156 4.156 20 C -0.155 4.155 21 C -0.159 4.159 22 C -0.152 4.152 23 C -0.145 4.145 24 C -0.090 4.090 25 C -0.198 4.198 26 H 0.089 0.911 27 H 0.155 0.845 28 H 0.131 0.869 29 H 0.237 0.763 30 H 0.112 0.888 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.148 0.852 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 16.692 -19.408 2.343 25.705 hybrid contribution -0.258 0.253 0.187 0.407 sum 16.435 -19.154 2.530 25.365 Atomic orbital electron populations 1.69649 1.05554 1.28494 1.48117 1.24463 0.95034 0.98855 0.95671 0.86178 0.80342 0.81393 0.79001 1.19871 1.20833 1.18297 1.20757 0.76938 0.96609 1.52146 0.87636 1.83580 1.22553 1.25645 1.80389 1.19155 0.91661 0.85543 0.93639 1.21094 1.01137 0.91244 1.09156 1.20546 0.92246 0.97483 1.00972 1.17343 0.91387 0.84374 1.11827 1.43295 1.19750 1.13281 1.54305 1.20848 0.81174 0.90834 0.77788 1.90697 1.62247 1.43530 1.43828 1.20300 0.98773 0.94439 0.98278 1.21421 1.02928 0.96508 0.93998 1.21353 0.96698 0.95336 1.02222 1.21919 0.94805 0.99417 0.99336 1.21379 0.98317 1.00564 0.95656 1.21314 0.99707 0.96914 0.97293 1.20331 0.95512 0.97297 1.01388 1.20735 0.99655 0.90129 0.98486 1.20152 0.91797 0.97700 1.10187 0.91061 0.84508 0.86913 0.76314 0.88768 0.90697 0.91328 0.91787 0.91876 0.92323 0.92324 0.92432 0.91911 0.91617 0.91680 0.91242 0.91183 0.85234 0.86169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.40 13.96 55.48 0.77 -24.63 16 2 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 3 Si 0.91 21.82 28.62 -169.99 -4.86 16.96 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.39 -10.95 9.94 30.88 0.31 -10.64 16 8 H 0.11 3.01 5.43 -52.48 -0.28 2.72 16 9 O -0.22 -5.76 8.58 0.04 0.00 -5.76 16 10 C 0.15 3.56 6.65 -39.08 -0.26 3.30 16 11 C -0.21 -4.41 9.16 -39.42 -0.36 -4.77 16 12 C -0.09 -1.64 9.96 -39.41 -0.39 -2.03 16 13 C 0.04 0.74 6.30 -83.63 -0.53 0.22 16 14 N -0.66 -8.66 5.11 -9.82 -0.05 -8.71 16 15 C 0.51 6.76 6.94 -10.99 -0.08 6.69 16 16 O -0.53 -9.19 13.25 5.55 0.07 -9.12 16 17 C -0.10 -0.87 2.04 -94.64 -0.19 -1.07 16 18 C -0.11 -0.81 4.94 -27.30 -0.13 -0.94 16 19 C -0.12 -0.70 5.32 -27.40 -0.15 -0.84 16 20 C -0.12 -0.68 5.85 -25.62 -0.15 -0.83 16 21 C -0.12 -0.79 5.31 -27.43 -0.15 -0.93 16 22 C -0.11 -0.80 5.61 -27.34 -0.15 -0.96 16 23 C -0.11 -1.00 3.84 -29.60 -0.11 -1.11 16 24 C -0.07 -1.34 8.68 -39.42 -0.34 -1.68 16 25 C -0.18 -3.74 9.98 -39.42 -0.39 -4.13 16 26 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.14 3.03 5.63 -52.49 -0.30 2.73 16 28 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 29 H 0.40 3.85 7.93 -40.82 -0.32 3.53 16 30 H 0.09 0.72 7.46 -51.93 -0.39 0.34 16 31 H 0.07 0.60 6.97 -51.93 -0.36 0.23 16 32 H 0.07 0.47 6.94 -51.93 -0.36 0.11 16 33 H 0.06 0.36 6.63 -51.93 -0.34 0.01 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.45 6.62 -51.93 -0.34 0.11 16 39 H 0.07 0.42 6.98 -51.93 -0.36 0.06 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.75 7.89 -51.93 -0.41 0.34 16 42 H 0.07 0.74 7.37 -51.93 -0.38 0.35 16 43 H 0.13 2.42 6.25 -52.49 -0.33 2.09 16 44 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 344.10 15.07 5.19 5.19 Total: -1.00 -31.37 344.10 -8.34 -39.70 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -6.28 Total: 4.42 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -3.18 Total: -18.06 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.72 Total: -33.34 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.07 Total: -14.88 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.86 Total: 16.96 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.37 -8.34 -39.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053714529.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.092 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds