Wall clock time and date at job start Tue Mar 31 2020 08:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86792 * 119.99933 * 2 1 4 4 H 1.48506 * 109.47065 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47238 * 299.99924 * 3 2 1 6 6 H 1.48504 * 109.47287 * 60.00110 * 3 2 1 7 7 C 1.38654 * 119.99659 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99490 * 179.97438 * 7 2 1 9 9 O 1.34829 * 120.00333 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00117 * 174.96500 * 9 7 2 11 11 C 1.38950 * 120.03365 * 5.35857 * 10 9 7 12 12 C 1.38125 * 120.07074 * 179.97438 * 11 10 9 13 13 C 1.38196 * 120.14072 * 359.72229 * 12 11 10 14 14 C 1.38926 * 120.06509 * 0.55855 * 13 12 11 15 15 N 1.39920 * 120.03699 * 179.71446 * 14 13 12 16 16 C 1.34773 * 120.00405 * 214.84819 * 15 14 13 17 17 O 1.21291 * 119.99909 * 355.49490 * 16 15 14 18 18 C 1.50699 * 120.00400 * 175.50395 * 16 15 14 19 19 C 1.50471 * 109.62790 * 60.96088 * 18 16 15 20 20 C 1.54072 * 112.50102 * 213.86042 * 19 18 16 21 21 C 1.54072 * 112.81357 * 318.28322 * 20 19 18 22 22 C 1.50467 * 112.49614 * 318.28300 * 21 20 19 23 23 C 1.54240 * 108.51501 * 94.15735 * 22 21 20 24 24 C 1.45544 * 112.40825 * 279.99947 * 23 22 21 25 25 C 1.38736 * 120.03561 * 185.34283 * 10 9 7 26 26 H 0.97008 * 120.00467 * 359.97438 * 1 2 3 27 27 H 1.08005 * 119.96362 * 359.96085 * 11 10 9 28 28 H 1.08000 * 119.92712 * 180.02562 * 12 11 10 29 29 H 1.08003 * 119.97049 * 180.29961 * 13 12 11 30 30 H 0.97008 * 119.99697 * 34.84951 * 15 14 13 31 31 H 1.09001 * 109.78159 * 300.48072 * 18 16 15 32 32 H 1.09005 * 108.88050 * 334.63557 * 19 18 16 33 33 H 1.08997 * 108.88166 * 93.17912 * 19 18 16 34 34 H 1.08994 * 108.81812 * 197.42145 * 20 19 18 35 35 H 1.08999 * 108.81536 * 79.14287 * 20 19 18 36 36 H 1.08998 * 108.87480 * 197.50704 * 21 20 19 37 37 H 1.08998 * 108.87474 * 79.05985 * 21 20 19 38 38 H 1.09001 * 109.63071 * 213.86842 * 22 21 20 39 39 H 1.09008 * 109.63365 * 334.24941 * 22 21 20 40 40 H 1.08994 * 108.89383 * 40.75298 * 23 22 21 41 41 H 1.09004 * 108.89479 * 159.24397 * 23 22 21 42 42 H 1.08997 * 108.89366 * 182.69281 * 24 23 22 43 43 H 1.09006 * 108.89738 * 301.27910 * 24 23 22 44 44 H 1.08002 * 120.06537 * 0.04391 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0698 -3.5046 -0.1072 11 6 3.4577 -3.4383 -0.0979 12 6 4.2066 -4.5939 -0.2059 13 6 3.5786 -5.8198 -0.3177 14 6 2.1913 -5.8923 -0.3335 15 7 1.5561 -7.1333 -0.4527 16 6 0.4011 -7.2360 -1.1395 17 8 -0.1304 -6.2407 -1.5846 18 6 -0.2303 -8.5873 -1.3544 19 6 -0.5660 -9.2057 -0.0244 20 6 -0.4125 -10.7387 -0.0312 21 6 -0.9549 -11.3876 -1.3191 22 6 -2.2561 -10.7789 -1.7666 23 6 -1.9505 -9.6708 -2.7950 24 6 -1.5337 -8.4275 -2.1635 25 6 1.4363 -4.7332 -0.2253 26 1 -0.4851 0.8401 0.0004 27 1 3.9515 -2.4821 -0.0064 28 1 5.2852 -4.5397 -0.1980 29 1 4.1668 -6.7221 -0.3971 30 1 1.9471 -7.9198 -0.0410 31 1 0.4595 -9.2350 -1.8956 32 1 0.0950 -8.7886 0.7354 33 1 -1.5963 -8.9570 0.2302 34 1 -0.9505 -11.1497 0.8229 35 1 0.6441 -10.9867 0.0693 36 1 -1.1063 -12.4522 -1.1408 37 1 -0.2175 -11.2663 -2.1126 38 1 -2.8792 -11.5451 -2.2280 39 1 -2.7755 -10.3528 -0.9081 40 1 -1.1561 -10.0137 -3.4578 41 1 -2.8457 -9.4828 -3.3878 42 1 -1.3796 -7.6738 -2.9357 43 1 -2.3243 -8.0894 -1.4936 44 1 0.3577 -4.7872 -0.2332 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053714531.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:27 Heat of formation + Delta-G solvation = -54.426603 kcal Electronic energy + Delta-G solvation = -24489.290528 eV Core-core repulsion = 20985.548312 eV Total energy + Delta-G solvation = -3503.742216 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.59799 -39.01367 -38.04021 -36.42052 -34.14331 -32.60409 -32.49305 -32.19858 -29.45247 -28.42306 -25.76408 -25.18448 -24.78701 -22.57398 -21.54390 -20.81517 -20.28341 -19.31062 -18.22815 -17.49236 -16.84328 -15.75197 -15.46745 -15.16091 -15.02678 -14.78958 -14.62552 -14.17170 -14.04119 -13.84876 -13.48187 -13.45473 -13.21623 -12.81404 -12.45860 -12.40963 -12.23881 -11.72172 -11.48969 -11.45792 -11.15201 -11.01333 -10.99918 -10.87024 -10.74555 -10.68227 -10.60347 -10.41424 -10.35422 -9.69525 -9.57965 -9.09514 -8.78955 -7.66351 -7.15273 -6.39139 -3.98310 2.04732 2.37169 2.91796 3.15757 3.16952 3.22551 3.27674 4.01155 4.37100 4.40196 4.52945 4.61659 4.76735 4.92445 4.96772 4.99376 5.10880 5.15529 5.20090 5.29383 5.40875 5.51037 5.65014 5.68666 5.75285 5.79211 5.85829 5.89472 5.93245 5.95918 6.05950 6.12194 6.13134 6.20061 6.24744 6.31125 6.42275 6.74578 6.92663 7.07151 7.11962 7.37784 7.51246 7.75084 7.83601 8.05824 8.42882 9.05819 9.77563 10.78893 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.024359 B = 0.003017 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.210254 B = 9279.012451 C =10087.098813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.093 0.907 9 O -0.174 6.174 10 C 0.167 3.833 11 C -0.246 4.246 12 C -0.059 4.059 13 C -0.237 4.237 14 C 0.175 3.825 15 N -0.671 5.671 16 C 0.508 3.492 17 O -0.507 6.507 18 C -0.099 4.099 19 C -0.116 4.116 20 C -0.115 4.115 21 C -0.120 4.120 22 C -0.121 4.121 23 C -0.116 4.116 24 C -0.104 4.104 25 C -0.188 4.188 26 H 0.269 0.731 27 H 0.128 0.872 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.404 0.596 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.732 -21.922 -1.338 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.077 6.077 10 C 0.112 3.888 11 C -0.266 4.266 12 C -0.078 4.078 13 C -0.258 4.258 14 C 0.082 3.918 15 N -0.316 5.316 16 C 0.295 3.705 17 O -0.381 6.381 18 C -0.121 4.121 19 C -0.154 4.154 20 C -0.152 4.152 21 C -0.158 4.158 22 C -0.158 4.158 23 C -0.154 4.154 24 C -0.142 4.142 25 C -0.209 4.209 26 H 0.079 0.921 27 H 0.145 0.855 28 H 0.129 0.871 29 H 0.125 0.875 30 H 0.239 0.761 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.135 -21.010 -1.670 21.077 hybrid contribution 0.834 0.412 0.214 0.954 sum 0.699 -20.598 -1.456 20.662 Atomic orbital electron populations 1.70067 1.05959 1.27491 1.46024 1.25305 0.95839 0.98829 0.96630 0.85643 0.79110 0.80407 0.78210 1.19100 1.20162 1.20176 1.21392 0.91829 0.80799 1.52728 0.88961 1.83990 1.34271 1.11350 1.78123 1.19147 0.90012 0.87868 0.91770 1.21181 0.93767 0.99066 1.12545 1.20496 0.98356 0.91717 0.97226 1.20272 0.91913 0.97687 1.15909 1.17209 0.90880 0.84103 0.99634 1.43416 1.24501 1.09737 1.53912 1.20793 0.80506 0.91555 0.77651 1.90785 1.60918 1.38271 1.48092 1.21067 0.98812 0.93535 0.98662 1.21395 1.03056 0.95346 0.95557 1.21909 1.01087 0.94318 0.97927 1.21367 0.97463 0.99327 0.97640 1.21378 0.97279 0.97923 0.99222 1.20497 1.01410 0.95373 0.98087 1.20336 0.95270 0.98210 1.00381 1.20170 1.00596 0.89229 1.10915 0.92098 0.85479 0.87094 0.87456 0.76058 0.88257 0.91614 0.90997 0.91916 0.92071 0.92381 0.92031 0.92113 0.91461 0.92175 0.91897 0.90497 0.91495 0.84877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.08 13.67 55.48 0.76 -25.33 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 21.03 29.55 -169.99 -5.02 16.00 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.39 -11.30 9.49 30.89 0.29 -11.00 16 8 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 9 O -0.17 -5.24 9.75 0.06 0.00 -5.24 16 10 C 0.17 4.28 6.64 -39.13 -0.26 4.02 16 11 C -0.25 -5.52 9.17 -39.36 -0.36 -5.88 16 12 C -0.06 -1.10 10.03 -39.64 -0.40 -1.50 16 13 C -0.24 -4.13 9.96 -39.34 -0.39 -4.52 16 14 C 0.17 3.33 6.30 -83.72 -0.53 2.81 16 15 N -0.67 -9.84 5.01 -9.88 -0.05 -9.89 16 16 C 0.51 7.86 6.88 -10.99 -0.08 7.79 16 17 O -0.51 -10.46 13.04 5.55 0.07 -10.39 16 18 C -0.10 -1.05 2.21 -92.39 -0.20 -1.26 16 19 C -0.12 -1.02 4.82 -27.43 -0.13 -1.15 16 20 C -0.11 -0.77 5.85 -25.61 -0.15 -0.92 16 21 C -0.12 -0.79 5.31 -27.44 -0.15 -0.94 16 22 C -0.12 -0.87 5.60 -27.35 -0.15 -1.02 16 23 C -0.12 -0.98 5.26 -29.60 -0.16 -1.13 16 24 C -0.10 -1.14 4.30 -29.60 -0.13 -1.27 16 25 C -0.19 -4.42 8.64 -39.21 -0.34 -4.76 16 26 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.13 2.83 5.63 -52.48 -0.30 2.53 16 28 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 30 H 0.40 4.26 8.25 -40.82 -0.34 3.93 16 31 H 0.10 0.89 6.98 -51.93 -0.36 0.52 16 32 H 0.07 0.59 6.94 -51.93 -0.36 0.23 16 33 H 0.07 0.67 6.63 -51.93 -0.34 0.33 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.41 6.63 -51.93 -0.34 0.06 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.51 6.99 -51.92 -0.36 0.15 16 40 H 0.06 0.48 7.47 -51.93 -0.39 0.09 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 1.02 7.32 -51.93 -0.38 0.64 16 43 H 0.07 0.78 7.47 -51.93 -0.39 0.39 16 44 H 0.13 3.37 6.23 -52.49 -0.33 3.04 16 LS Contribution 345.19 15.07 5.20 5.20 Total: -1.00 -33.98 345.19 -8.52 -42.50 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.26 Total: 6.89 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -3.22 Total: -19.75 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.71 Total: -35.21 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: 0.07 Total: -15.63 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.98 -8.52 -42.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053714531.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.926 kcal (2) G-P(sol) polarization free energy of solvation -33.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds