Wall clock time and date at job start Tue Mar 31 2020 08:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 120.00000 * 2 1 4 4 H 1.48500 * 109.46979 * 239.99798 * 3 2 1 5 5 H 1.48507 * 109.46657 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47331 * 119.99259 * 3 2 1 7 7 C 1.38946 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00077 * 160.89229 * 7 2 1 9 9 N 1.37105 * 120.00106 * 340.88736 * 7 2 1 10 10 C 1.34771 * 119.99888 * 310.09036 * 9 7 2 11 11 O 1.21297 * 119.99838 * 174.20627 * 10 9 7 12 12 C 1.50701 * 120.00333 * 354.21487 * 10 9 7 13 13 C 1.53001 * 109.47338 * 186.14268 * 12 10 9 14 14 O 1.42894 * 109.47080 * 179.97438 * 13 12 10 15 15 C 1.35905 * 117.00039 * 180.02562 * 14 13 12 16 16 C 1.38738 * 120.05297 * 359.72230 * 15 14 13 17 17 C 1.38138 * 119.94078 * 179.74688 * 16 15 14 18 18 C 1.38262 * 120.05987 * 0.50722 * 17 16 15 19 19 C 1.38272 * 120.10984 * 359.77009 * 18 17 16 20 20 C 1.38142 * 120.05511 * 359.97438 * 19 18 17 21 21 C 1.46496 * 119.99774 * 130.09174 * 9 7 2 22 22 C 1.54273 * 110.03285 * 302.09220 * 21 9 7 23 23 C 1.54960 * 104.15834 * 95.75494 * 22 21 9 24 24 C 1.54898 * 102.77717 * 37.89159 * 23 22 21 25 25 C 1.53869 * 110.03490 * 59.30977 * 21 9 7 26 26 H 0.96995 * 120.00132 * 5.05816 * 1 2 3 27 27 H 1.08998 * 109.46544 * 306.14024 * 12 10 9 28 28 H 1.08999 * 109.47340 * 66.13637 * 12 10 9 29 29 H 1.09003 * 109.46763 * 300.00063 * 13 12 10 30 30 H 1.08999 * 109.46923 * 59.99237 * 13 12 10 31 31 H 1.07998 * 120.02937 * 359.97438 * 16 15 14 32 32 H 1.08000 * 119.97422 * 180.27369 * 17 16 15 33 33 H 1.08000 * 119.95124 * 179.74305 * 18 17 16 34 34 H 1.07993 * 119.97288 * 179.97438 * 19 18 17 35 35 H 1.08001 * 120.03320 * 179.97438 * 20 19 18 36 36 H 1.08998 * 110.01518 * 180.70553 * 21 9 7 37 37 H 1.08996 * 110.48576 * 214.40288 * 22 21 9 38 38 H 1.09000 * 110.48370 * 337.04741 * 22 21 9 39 39 H 1.08998 * 110.72522 * 279.57421 * 23 22 21 40 40 H 1.09004 * 110.92390 * 156.29448 * 23 22 21 41 41 H 1.08999 * 110.48197 * 203.40532 * 24 23 22 42 42 H 1.08992 * 110.59700 * 80.81494 * 24 23 22 43 43 H 1.09004 * 110.03450 * 359.95364 * 25 21 9 44 44 H 1.09004 * 110.03033 * 121.38482 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0443 -1.2292 -0.3056 9 7 1.3801 -2.3578 0.3898 10 6 0.6912 -2.3924 1.5477 11 8 0.0485 -3.3782 1.8417 12 6 0.7193 -1.2064 2.4770 13 6 -0.0098 -1.5583 3.7752 14 8 0.0173 -0.4339 4.6566 15 6 -0.5907 -0.5808 5.8632 16 6 -1.2058 -1.7808 6.1896 17 6 -1.8186 -1.9294 7.4187 18 6 -1.8283 -0.8802 8.3191 19 6 -1.2209 0.3187 7.9938 20 6 -0.6022 0.4706 6.7681 21 6 1.4571 -3.5537 -0.4528 22 6 0.9007 -3.2464 -1.8585 23 6 2.1581 -2.9064 -2.6979 24 6 3.2116 -3.9046 -2.1565 25 6 2.9258 -3.9715 -0.6420 26 1 -0.4850 0.8367 -0.0741 27 1 1.7534 -0.9445 2.7006 28 1 0.2249 -0.3597 2.0006 29 1 -1.0440 -1.8203 3.5516 30 1 0.4846 -2.4050 4.2515 31 1 -1.2024 -2.5991 5.4849 32 1 -2.2937 -2.8647 7.6752 33 1 -2.3115 -0.9969 9.2779 34 1 -1.2302 1.1369 8.6986 35 1 -0.1283 1.4073 6.5143 36 1 0.8929 -4.3677 0.0023 37 1 0.3939 -4.1204 -2.2676 38 1 0.2230 -2.3934 -1.8224 39 1 2.4735 -1.8782 -2.5211 40 1 1.9752 -3.0757 -3.7591 41 1 4.2194 -3.5314 -2.3384 42 1 3.0807 -4.8855 -2.6132 43 1 3.5815 -3.2841 -0.1075 44 1 3.0744 -4.9885 -0.2787 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057567615.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:48:38 Heat of formation + Delta-G solvation = -55.767058 kcal Electronic energy + Delta-G solvation = -24999.437091 eV Core-core repulsion = 21495.636749 eV Total energy + Delta-G solvation = -3503.800342 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.83766 -39.01785 -37.25366 -36.55438 -34.08845 -31.68323 -31.13711 -30.64015 -29.17965 -27.93952 -27.17215 -24.88940 -23.80494 -22.31404 -21.45019 -20.05201 -19.41453 -19.24315 -18.08955 -16.43541 -15.86000 -15.73585 -15.68442 -15.33877 -15.14691 -14.56013 -14.31684 -14.18447 -13.76325 -13.45572 -13.30894 -12.92316 -12.84110 -12.45963 -12.26579 -11.60511 -11.56215 -11.46027 -11.32623 -11.07032 -10.86193 -10.78010 -10.63382 -10.49868 -10.42142 -10.35989 -10.26842 -10.10274 -9.87179 -9.78395 -8.89869 -8.87066 -8.32910 -7.98486 -7.35189 -6.46742 -4.22847 1.45237 1.59742 3.10451 3.19863 3.21013 3.51635 3.92637 3.99019 4.14467 4.82501 4.85542 4.96371 5.03320 5.23874 5.35277 5.42411 5.47099 5.54515 5.58813 5.72650 5.75230 5.83417 6.05362 6.11814 6.13814 6.24083 6.30174 6.32486 6.41131 6.45485 6.48590 6.54276 6.57706 6.59604 6.62218 6.71356 6.75211 6.93909 7.04252 7.06606 7.15958 7.21495 7.42008 7.78534 7.94239 8.60863 8.87209 9.54015 9.97502 10.58833 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018236 B = 0.003936 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.054159 B = 7111.309904 C = 8218.356179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.049 3.951 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.329 4.329 8 H 0.084 0.916 9 N -0.443 5.443 10 C 0.520 3.480 11 O -0.619 6.619 12 C -0.131 4.131 13 C 0.078 3.922 14 O -0.315 6.315 15 C 0.142 3.858 16 C -0.210 4.210 17 C -0.081 4.081 18 C -0.171 4.171 19 C -0.085 4.085 20 C -0.161 4.161 21 C 0.133 3.867 22 C -0.119 4.119 23 C -0.116 4.116 24 C -0.119 4.119 25 C -0.128 4.128 26 H 0.274 0.726 27 H 0.084 0.916 28 H 0.126 0.874 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.132 0.868 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.078 0.922 37 H 0.048 0.952 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.888 -0.776 6.579 6.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.158 4.158 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.457 4.457 8 H 0.101 0.899 9 N -0.163 5.163 10 C 0.311 3.689 11 O -0.506 6.506 12 C -0.171 4.171 13 C 0.003 3.997 14 O -0.229 6.229 15 C 0.096 3.904 16 C -0.229 4.229 17 C -0.099 4.099 18 C -0.189 4.189 19 C -0.103 4.103 20 C -0.179 4.179 21 C 0.028 3.972 22 C -0.157 4.157 23 C -0.154 4.154 24 C -0.156 4.156 25 C -0.166 4.166 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.143 0.857 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.150 0.850 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.537 -0.975 6.647 6.740 hybrid contribution 0.274 0.750 -0.224 0.829 sum 0.812 -0.225 6.423 6.478 Atomic orbital electron populations 1.69899 1.06157 1.28439 1.44744 1.25536 0.95155 0.99919 0.95155 0.86311 0.79623 0.81473 0.79346 1.19730 1.20751 1.19351 1.19126 0.95502 0.83546 1.47562 0.89877 1.43324 1.47613 1.09712 1.15630 1.19834 0.80498 0.86777 0.81833 1.90495 1.46807 1.36214 1.77054 1.21614 1.02056 1.01325 0.92077 1.22655 1.01574 0.85975 0.89479 1.86048 1.71699 1.41119 1.23994 1.19145 0.91802 0.93727 0.85756 1.21437 1.04016 0.98101 0.99321 1.20937 0.97375 0.98608 0.92997 1.20976 1.03709 0.94056 1.00174 1.20897 0.96451 0.97422 0.95492 1.20466 1.05048 0.98586 0.93820 1.21547 0.94431 0.89774 0.91418 1.22515 0.97673 1.00823 0.94733 1.22460 0.95449 1.00191 0.97273 1.22282 0.98723 0.98708 0.95930 1.22455 0.97914 1.00187 0.96071 0.91592 0.89806 0.85685 0.91655 0.92432 0.85022 0.86080 0.86352 0.85785 0.85385 0.90413 0.93284 0.89987 0.90298 0.93375 0.92633 0.92808 0.90976 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.65 11.13 55.50 0.62 -21.03 16 2 C 0.05 1.16 3.68 -17.47 -0.06 1.10 16 3 Si 0.91 18.81 29.60 -169.99 -5.03 13.77 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.33 -7.77 6.34 -14.93 -0.09 -7.87 16 8 H 0.08 1.92 7.18 -52.49 -0.38 1.54 16 9 N -0.44 -10.57 2.33 -106.54 -0.25 -10.81 16 10 C 0.52 12.97 6.97 -10.99 -0.08 12.90 16 11 O -0.62 -16.50 15.35 5.54 0.09 -16.41 16 12 C -0.13 -2.99 4.43 -27.88 -0.12 -3.11 16 13 C 0.08 1.59 4.05 37.16 0.15 1.74 16 14 O -0.32 -6.14 10.14 -19.44 -0.20 -6.33 16 15 C 0.14 2.43 6.69 -39.21 -0.26 2.16 16 16 C -0.21 -3.30 9.04 -39.43 -0.36 -3.65 16 17 C -0.08 -1.06 10.04 -39.61 -0.40 -1.46 16 18 C -0.17 -2.04 10.04 -39.56 -0.40 -2.44 16 19 C -0.08 -1.04 10.04 -39.60 -0.40 -1.43 16 20 C -0.16 -2.36 9.99 -39.43 -0.39 -2.75 16 21 C 0.13 2.83 3.35 -66.81 -0.22 2.61 16 22 C -0.12 -2.38 6.10 -25.03 -0.15 -2.53 16 23 C -0.12 -2.03 6.56 -24.70 -0.16 -2.19 16 24 C -0.12 -1.88 6.83 -25.07 -0.17 -2.05 16 25 C -0.13 -2.31 6.24 -25.62 -0.16 -2.47 16 26 H 0.27 6.66 8.32 -40.82 -0.34 6.32 16 27 H 0.08 1.85 8.02 -51.93 -0.42 1.44 16 28 H 0.13 3.06 5.08 -51.93 -0.26 2.80 16 29 H 0.07 1.37 7.54 -51.93 -0.39 0.98 16 30 H 0.06 1.13 7.67 -51.93 -0.40 0.73 16 31 H 0.13 2.09 6.30 -52.49 -0.33 1.76 16 32 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 36 H 0.08 1.77 6.96 -51.93 -0.36 1.40 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.91 7.97 -51.93 -0.41 1.49 16 39 H 0.08 1.52 7.24 -51.93 -0.38 1.14 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 1.38 6.93 -51.93 -0.36 1.02 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 352.40 15.07 5.31 5.31 Total: -1.00 -27.29 352.40 -9.38 -36.66 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -6.63 Total: 10.30 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -3.28 Total: -11.45 kcal Atomic # 7 Polarization: -32.22 SS G_CDS: 0.37 Total: -31.85 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.11 Total: -22.75 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.29 -9.38 -36.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057567615.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.106 kcal (2) G-P(sol) polarization free energy of solvation -27.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds