Wall clock time and date at job start Tue Mar 31 2020 08:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86797 * 120.00120 * 2 1 4 4 H 1.48496 * 109.47362 * 270.00069 * 3 2 1 5 5 H 1.48509 * 109.47076 * 30.00054 * 3 2 1 6 6 H 1.48499 * 109.47326 * 149.99701 * 3 2 1 7 7 C 1.40229 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00126 * 185.98004 * 7 2 1 9 9 C 1.41109 * 119.99976 * 5.98039 * 7 2 1 10 10 C 1.40888 * 120.10401 * 213.74188 * 9 7 2 11 11 C 1.36313 * 119.89056 * 179.97438 * 10 9 7 12 12 C 1.40012 * 120.10849 * 0.02562 * 11 10 9 13 13 C 1.47644 * 119.89597 * 179.97438 * 12 11 10 14 14 O 1.21588 * 119.99970 * 326.07981 * 13 12 11 15 15 N 1.34773 * 120.00075 * 146.08518 * 13 12 11 16 16 C 1.46924 * 120.63089 * 2.78917 * 15 13 12 17 17 C 1.53192 * 108.77605 * 233.63129 * 16 15 13 18 18 C 1.53037 * 109.31413 * 305.36609 * 17 16 15 19 19 C 1.53043 * 109.53740 * 61.36540 * 18 17 16 20 20 C 1.46927 * 120.63119 * 182.81198 * 15 13 12 21 21 H 1.08990 * 109.70500 * 246.22515 * 20 15 13 22 22 C 1.53000 * 109.58697 * 6.58175 * 20 15 13 23 23 C 1.52994 * 109.47209 * 177.80483 * 22 20 15 24 24 O 1.42900 * 109.47180 * 174.89038 * 23 22 20 25 25 C 1.40013 * 120.21128 * 0.25173 * 12 11 10 26 26 C 1.36321 * 120.10050 * 359.48342 * 25 12 11 27 27 H 0.97005 * 120.00389 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.05345 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.94541 * 179.97438 * 11 10 9 30 30 H 1.09007 * 109.58746 * 113.84654 * 16 15 13 31 31 H 1.09004 * 109.70453 * 353.49075 * 16 15 13 32 32 H 1.09002 * 109.49600 * 185.41226 * 17 16 15 33 33 H 1.09005 * 109.52092 * 65.33361 * 17 16 15 34 34 H 1.09000 * 109.45743 * 301.34533 * 18 17 16 35 35 H 1.09000 * 109.45923 * 181.38801 * 18 17 16 36 36 H 1.08996 * 109.49670 * 178.68447 * 19 18 17 37 37 H 1.08991 * 109.49739 * 58.58457 * 19 18 17 38 38 H 1.09012 * 109.47091 * 57.80191 * 22 20 15 39 39 H 1.09000 * 109.47110 * 297.80900 * 22 20 15 40 40 H 1.08996 * 109.47466 * 54.88700 * 23 22 20 41 41 H 1.08999 * 109.47034 * 294.88752 * 23 22 20 42 42 H 0.96696 * 114.00427 * 180.02562 * 24 23 22 43 43 H 1.07997 * 119.94984 * 179.74230 * 25 12 11 44 44 H 1.08005 * 120.05001 * 180.27846 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4880 2.0464 -1.4000 5 1 1.4379 2.6527 0.7001 6 1 3.5380 1.4402 0.7001 7 6 2.0076 -1.2144 0.0005 8 1 3.0831 -1.2170 0.0980 9 6 1.3078 -2.4332 -0.1262 10 6 1.7716 -3.5866 0.5366 11 6 1.0919 -4.7616 0.4116 12 6 -0.0651 -4.8234 -0.3745 13 6 -0.7973 -6.0986 -0.5072 14 8 -0.1891 -7.1515 -0.5100 15 7 -2.1399 -6.0957 -0.6253 16 6 -2.8833 -4.8298 -0.6849 17 6 -3.9732 -4.8468 0.3915 18 6 -4.8412 -6.0945 0.2133 19 6 -3.9776 -7.3470 0.3804 20 6 -2.8879 -7.3583 -0.6963 21 1 -3.3469 -7.4587 -1.6797 22 6 -1.9374 -8.5320 -0.4517 23 6 -2.7284 -9.8415 -0.4719 24 8 -1.8264 -10.9445 -0.3625 25 6 -0.5267 -3.6813 -1.0399 26 6 0.1433 -2.5005 -0.9164 27 1 -0.4851 0.8401 0.0004 28 1 2.6637 -3.5398 1.1435 29 1 1.4469 -5.6464 0.9190 30 1 -3.3422 -4.7215 -1.6678 31 1 -2.2046 -3.9961 -0.5047 32 1 -4.5932 -3.9555 0.2956 33 1 -3.5103 -4.8636 1.3782 34 1 -5.2844 -6.0893 -0.7825 35 1 -5.6326 -6.0964 0.9628 36 1 -4.6009 -8.2351 0.2765 37 1 -3.5143 -7.3404 1.3669 38 1 -1.4558 -8.4133 0.5191 39 1 -1.1783 -8.5539 -1.2336 40 1 -3.2827 -9.9168 -1.4073 41 1 -3.4255 -9.8578 0.3658 42 1 -2.2596 -11.8090 -0.3690 43 1 -1.4173 -3.7348 -1.6484 44 1 -0.2160 -1.6189 -1.4264 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058242299.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:02 Heat of formation + Delta-G solvation = -49.684617 kcal Electronic energy + Delta-G solvation = -25193.649088 eV Core-core repulsion = 21690.112500 eV Total energy + Delta-G solvation = -3503.536588 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.27020 -37.75560 -36.79469 -36.67000 -34.02619 -33.02157 -32.51592 -29.99217 -29.60524 -28.46291 -26.17989 -24.59940 -23.83179 -21.84142 -21.59146 -20.49241 -20.39625 -18.78343 -17.49608 -17.33317 -16.22816 -15.90497 -15.47826 -15.09413 -14.71738 -14.63024 -14.18343 -13.83556 -13.75119 -13.64129 -13.15358 -12.91698 -12.72791 -12.44770 -12.39548 -11.90957 -11.83469 -11.58013 -11.47176 -11.26321 -11.12023 -10.94134 -10.85677 -10.84713 -10.68685 -10.51585 -10.29462 -9.90874 -9.86227 -9.40729 -9.35933 -8.37447 -8.15202 -7.66019 -7.42192 -6.90015 -4.59085 2.27009 2.95087 2.95933 2.99059 3.02458 3.41056 3.75496 3.82545 4.28904 4.54766 4.84354 4.85919 4.96610 5.13445 5.25017 5.29998 5.40515 5.46771 5.50169 5.57037 5.64062 5.77108 5.77648 5.86901 5.95766 6.01722 6.10464 6.13865 6.23922 6.28902 6.37781 6.52848 6.67903 6.76155 6.89519 6.99264 7.10307 7.13678 7.45940 7.59045 7.65466 7.78136 7.87512 8.06643 8.11050 8.43083 8.68012 8.75731 9.00004 10.02965 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.024496 B = 0.003585 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.762579 B = 7807.395424 C = 8707.569731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.454 4.454 8 H 0.082 0.918 9 C 0.128 3.872 10 C -0.227 4.227 11 C -0.033 4.033 12 C -0.266 4.266 13 C 0.574 3.426 14 O -0.556 6.556 15 N -0.611 5.611 16 C 0.077 3.923 17 C -0.135 4.135 18 C -0.118 4.118 19 C -0.134 4.134 20 C 0.153 3.847 21 H 0.064 0.936 22 C -0.108 4.108 23 C 0.068 3.932 24 O -0.570 6.570 25 C -0.086 4.086 26 C -0.162 4.162 27 H 0.283 0.717 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.133 0.867 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.038 0.962 41 H 0.040 0.960 42 H 0.372 0.628 43 H 0.109 0.891 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.744 -7.966 -0.782 13.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.483 4.483 8 H 0.100 0.900 9 C 0.125 3.875 10 C -0.246 4.246 11 C -0.052 4.052 12 C -0.271 4.271 13 C 0.369 3.631 14 O -0.437 6.437 15 N -0.345 5.345 16 C -0.045 4.045 17 C -0.174 4.174 18 C -0.156 4.156 19 C -0.172 4.172 20 C 0.050 3.950 21 H 0.082 0.918 22 C -0.145 4.145 23 C -0.010 4.010 24 O -0.374 6.374 25 C -0.105 4.105 26 C -0.181 4.181 27 H 0.094 0.906 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.077 0.923 31 H 0.150 0.850 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.118 0.882 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.218 0.782 43 H 0.126 0.874 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.186 -7.850 -0.757 12.882 hybrid contribution -0.419 0.424 0.082 0.602 sum -10.605 -7.426 -0.675 12.964 Atomic orbital electron populations 1.69678 1.07575 1.29556 1.34897 1.25989 0.94941 1.01468 0.92157 0.86178 0.80381 0.80042 0.79402 1.19182 1.20118 1.18486 1.19745 0.95369 0.90190 1.43012 0.90022 1.17792 0.91049 0.92014 0.86596 1.20818 1.03349 0.94090 1.06358 1.20293 0.92697 0.96529 0.95682 1.18972 1.01955 0.92630 1.13513 1.18715 0.80607 0.89734 0.74076 1.90709 1.68152 1.32627 1.52237 1.47953 1.06085 1.05758 1.74716 1.22718 0.95348 0.88577 0.97902 1.21935 0.97417 0.97768 1.00257 1.21522 0.97699 0.94829 1.01553 1.22077 0.97210 0.98034 0.99886 1.21013 0.91912 0.84311 0.97786 0.91841 1.22050 0.97100 0.89170 1.06206 1.22471 0.91867 0.88061 0.98617 1.86557 1.37139 1.16539 1.97162 1.20861 0.97816 0.92884 0.98938 1.21051 0.98829 0.96346 1.01924 0.90571 0.88312 0.88460 0.92274 0.85031 0.90965 0.91424 0.92097 0.92094 0.91332 0.91407 0.90350 0.88165 0.94381 0.94194 0.78229 0.87365 0.86074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.94 10.93 55.56 0.61 -18.33 16 2 C 0.07 1.71 5.31 -17.31 -0.09 1.62 16 3 Si 0.92 17.61 29.57 -169.99 -5.03 12.58 16 4 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.26 -5.01 7.11 56.52 0.40 -4.60 16 7 C -0.45 -11.33 9.04 -37.75 -0.34 -11.67 16 8 H 0.08 1.96 7.86 -52.49 -0.41 1.55 16 9 C 0.13 3.24 5.51 -106.80 -0.59 2.65 16 10 C -0.23 -5.43 9.73 -39.27 -0.38 -5.81 16 11 C -0.03 -0.76 9.53 -39.61 -0.38 -1.14 16 12 C -0.27 -5.96 5.53 -104.73 -0.58 -6.54 16 13 C 0.57 12.02 7.29 -12.42 -0.09 11.93 16 14 O -0.56 -12.76 12.26 5.29 0.06 -12.69 16 15 N -0.61 -10.43 2.97 -166.40 -0.49 -10.92 16 16 C 0.08 1.15 4.92 -3.71 -0.02 1.13 16 17 C -0.14 -1.73 6.08 -26.61 -0.16 -1.89 16 18 C -0.12 -1.29 5.88 -26.69 -0.16 -1.44 16 19 C -0.13 -1.58 4.80 -26.61 -0.13 -1.71 16 20 C 0.15 2.21 3.04 -67.60 -0.21 2.00 16 21 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 22 C -0.11 -1.73 3.54 -26.73 -0.09 -1.82 16 23 C 0.07 0.84 6.50 37.15 0.24 1.08 16 24 O -0.57 -7.59 13.66 -35.23 -0.48 -8.07 16 25 C -0.09 -1.87 7.35 -39.61 -0.29 -2.16 16 26 C -0.16 -3.89 8.57 -39.27 -0.34 -4.23 16 27 H 0.28 6.15 8.29 -40.82 -0.34 5.81 16 28 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 29 H 0.10 2.17 7.97 -52.49 -0.42 1.75 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.13 2.28 3.55 -53.09 -0.19 2.09 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.66 6.86 -51.93 -0.36 0.31 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.47 7.13 -51.92 -0.37 1.10 16 39 H 0.10 1.93 6.34 -51.93 -0.33 1.60 16 40 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.04 0.42 6.83 -51.93 -0.35 0.07 16 42 H 0.37 2.86 9.12 45.56 0.42 3.28 16 43 H 0.11 2.04 5.40 -52.49 -0.28 1.76 16 44 H 0.12 2.96 6.43 -52.48 -0.34 2.63 16 LS Contribution 342.30 15.07 5.16 5.16 Total: -1.00 -28.78 342.30 -9.35 -38.12 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -5.57 Total: 12.17 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -3.60 Total: -18.01 kcal Atomic # 7 Polarization: -29.37 SS G_CDS: 0.11 Total: -29.26 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.42 Total: -20.76 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.78 -9.35 -38.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058242299.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.562 kcal (2) G-P(sol) polarization free energy of solvation -28.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds