Wall clock time and date at job start Tue Mar 31 2020 08:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48498 * 109.47517 * 239.99948 * 3 2 1 5 5 H 1.48505 * 109.47332 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46989 * 120.00101 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38110 * 119.92772 * 179.76614 * 11 10 9 13 13 C 1.38304 * 120.06594 * 0.48719 * 12 11 10 14 14 C 1.50698 * 119.92742 * 179.74699 * 13 12 11 15 15 N 1.46508 * 109.46930 * 270.02005 * 14 13 12 16 16 C 1.34776 * 119.99798 * 179.97438 * 15 14 13 17 17 O 1.21286 * 120.00179 * 0.02562 * 16 15 14 18 18 C 1.50705 * 119.99799 * 180.02562 * 16 15 14 19 19 C 1.53001 * 109.47111 * 299.99848 * 18 16 15 20 20 C 1.53000 * 109.47091 * 179.97438 * 19 18 16 21 21 C 1.52994 * 109.46945 * 60.00502 * 20 19 18 22 22 C 1.53003 * 109.47336 * 299.99754 * 21 20 19 23 23 C 1.53001 * 109.47096 * 59.99881 * 22 21 20 24 24 C 1.38297 * 120.14055 * 359.76875 * 13 12 11 25 25 C 1.38101 * 120.07230 * 359.97438 * 24 13 12 26 26 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 28 28 H 1.07996 * 119.96227 * 180.23396 * 12 11 10 29 29 H 1.09003 * 109.47622 * 30.01908 * 14 13 12 30 30 H 1.09004 * 109.47221 * 150.02459 * 14 13 12 31 31 H 0.96994 * 120.00085 * 0.02562 * 15 14 13 32 32 H 1.08995 * 109.47135 * 60.00198 * 18 16 15 33 33 H 1.08998 * 109.47027 * 300.00501 * 19 18 16 34 34 H 1.09004 * 109.46638 * 60.00147 * 19 18 16 35 35 H 1.08995 * 109.47252 * 300.00408 * 20 19 18 36 36 H 1.08997 * 109.47060 * 180.02562 * 20 19 18 37 37 H 1.08999 * 109.47204 * 180.02562 * 21 20 19 38 38 H 1.09008 * 109.47252 * 59.99585 * 21 20 19 39 39 H 1.09004 * 109.47191 * 300.00418 * 22 21 20 40 40 H 1.08999 * 109.47839 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.47673 * 180.02562 * 23 22 21 42 42 H 1.09009 * 109.47278 * 59.99878 * 23 22 21 43 43 H 1.07999 * 119.96698 * 179.97438 * 24 13 12 44 44 H 1.07992 * 120.03608 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8885 -0.3378 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 7 4.6432 -7.6233 0.8925 16 6 5.3594 -8.7563 1.0334 17 8 5.7903 -9.3271 0.0539 18 6 5.6247 -9.3139 2.4081 19 6 6.3956 -8.2840 3.2362 20 6 6.6644 -8.8498 4.6321 21 6 7.4924 -10.1308 4.5123 22 6 6.7215 -11.1608 3.6842 23 6 6.4527 -10.5950 2.2884 24 6 4.2024 -4.5970 -0.2043 25 6 3.4573 -3.4394 -0.0956 26 1 -0.4850 0.8400 0.0004 27 1 0.3579 -4.7892 -0.2301 28 1 1.6953 -6.8452 -0.4323 29 1 3.8358 -7.8156 -1.0337 30 1 5.3321 -6.8566 -0.9342 31 1 4.2983 -7.1670 1.6758 32 1 4.6773 -9.5386 2.8981 33 1 7.3429 -8.0593 2.7461 34 1 5.8055 -7.3715 3.3219 35 1 5.7169 -9.0741 5.1219 36 1 7.2132 -8.1159 5.2222 37 1 7.6835 -10.5342 5.5067 38 1 8.4400 -9.9064 4.0225 39 1 5.7739 -11.3851 4.1740 40 1 7.3116 -12.0733 3.5985 41 1 5.9031 -11.3286 1.6985 42 1 7.4003 -10.3705 1.7985 43 1 5.2812 -4.5470 -0.1945 44 1 3.9527 -2.4845 -0.0005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067930659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:31 Heat of formation + Delta-G solvation = -72.267984 kcal Electronic energy + Delta-G solvation = -23738.121741 eV Core-core repulsion = 20233.605865 eV Total energy + Delta-G solvation = -3504.515876 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.23752 -39.14499 -37.80159 -36.80914 -34.43520 -32.40983 -31.57509 -30.97257 -30.29851 -29.64741 -26.02465 -24.96462 -23.37793 -22.74428 -22.07347 -20.66171 -20.53454 -19.79005 -18.09640 -17.45664 -16.90859 -16.04944 -15.50783 -15.18672 -14.70329 -14.61024 -14.40514 -14.37082 -14.16786 -13.78966 -13.66353 -13.52993 -12.89515 -12.80487 -12.70498 -12.56834 -12.44262 -12.05609 -11.70449 -11.51446 -11.40358 -11.39523 -10.96980 -10.90415 -10.81189 -10.73551 -10.67885 -10.51440 -10.36523 -9.67871 -9.44920 -8.94887 -8.91763 -8.30569 -7.34232 -6.54313 -4.13360 2.05638 2.11000 2.67849 3.07461 3.08526 3.11884 3.40242 3.89195 4.38944 4.41561 4.46728 4.54072 4.91836 4.92972 4.98724 5.01411 5.13520 5.15503 5.19683 5.23387 5.27538 5.35528 5.41099 5.55929 5.64423 5.75657 5.78349 5.79760 5.82708 5.90155 5.90594 5.99073 6.05270 6.10348 6.18067 6.33020 6.52696 6.58610 6.78559 6.93767 7.12207 7.25501 7.33304 7.61306 7.70237 7.90176 8.28487 8.90846 9.58843 10.63110 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.023466 B = 0.002504 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.933218 B =11181.422310 C =11783.884623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.160 3.840 11 C -0.195 4.195 12 C -0.055 4.055 13 C -0.214 4.214 14 C 0.178 3.822 15 N -0.722 5.722 16 C 0.512 3.488 17 O -0.549 6.549 18 C -0.107 4.107 19 C -0.111 4.111 20 C -0.118 4.118 21 C -0.122 4.122 22 C -0.120 4.120 23 C -0.098 4.098 24 C -0.051 4.051 25 C -0.237 4.237 26 H 0.272 0.728 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.401 0.599 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.108 0.892 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.447 -16.090 7.807 21.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.075 6.075 10 C 0.105 3.895 11 C -0.214 4.214 12 C -0.074 4.074 13 C -0.216 4.216 14 C 0.056 3.944 15 N -0.373 5.373 16 C 0.298 3.702 17 O -0.427 6.427 18 C -0.128 4.128 19 C -0.149 4.149 20 C -0.156 4.156 21 C -0.159 4.159 22 C -0.157 4.157 23 C -0.136 4.136 24 C -0.070 4.070 25 C -0.256 4.256 26 H 0.082 0.918 27 H 0.136 0.864 28 H 0.130 0.870 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.236 0.764 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.126 0.874 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.300 -16.253 7.099 21.030 hybrid contribution 0.233 1.183 0.327 1.250 sum 11.533 -15.070 7.426 20.378 Atomic orbital electron populations 1.70023 1.06012 1.28006 1.45317 1.25320 0.95862 0.98937 0.96321 0.85764 0.78728 0.79601 0.79266 1.19408 1.20196 1.19432 1.21308 0.91838 0.80733 1.53148 0.88975 1.83977 1.34490 1.11547 1.77529 1.19440 0.90324 0.88054 0.91649 1.20213 0.99666 0.90274 1.11294 1.20532 0.92769 0.96823 0.97228 1.19214 0.93570 0.93530 1.15273 1.19972 0.98475 0.92591 0.83374 1.46384 1.54703 1.26075 1.10121 1.20699 0.77722 0.80480 0.91273 1.90678 1.51447 1.59707 1.40828 1.21364 1.01060 0.97094 0.93283 1.21536 1.00627 0.97296 0.95466 1.21526 1.00464 0.97212 0.96357 1.21567 0.98920 0.95564 0.99882 1.21567 1.00432 0.98173 0.95575 1.21333 1.00365 0.95307 0.96619 1.20635 0.98355 0.91668 0.96309 1.21157 0.93771 0.98943 1.11740 0.91806 0.86377 0.86991 0.91638 0.91683 0.76426 0.88674 0.91373 0.91241 0.91710 0.91624 0.92049 0.91926 0.91949 0.91787 0.91332 0.91264 0.87437 0.85428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.58 13.67 55.48 0.76 -23.83 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 19.93 29.55 -169.99 -5.02 14.91 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.39 -10.67 9.49 30.89 0.29 -10.38 16 8 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 9 O -0.17 -4.77 9.76 0.05 0.00 -4.77 16 10 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 11 C -0.20 -3.90 9.99 -39.39 -0.39 -4.30 16 12 C -0.05 -0.91 9.69 -39.60 -0.38 -1.30 16 13 C -0.21 -3.41 5.25 -104.58 -0.55 -3.96 16 14 C 0.18 2.50 5.80 -5.19 -0.03 2.47 16 15 N -0.72 -8.86 5.44 -61.46 -0.33 -9.20 16 16 C 0.51 6.55 7.16 -10.98 -0.08 6.47 16 17 O -0.55 -9.04 15.98 5.55 0.09 -8.95 16 18 C -0.11 -1.00 2.53 -91.77 -0.23 -1.24 16 19 C -0.11 -0.92 5.10 -26.73 -0.14 -1.06 16 20 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 21 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 22 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 23 C -0.10 -0.92 4.49 -26.73 -0.12 -1.04 16 24 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 25 C -0.24 -4.86 9.17 -39.39 -0.36 -5.22 16 26 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 28 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 30 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 31 H 0.40 4.36 7.88 -40.82 -0.32 4.04 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.55 7.57 -51.93 -0.39 0.16 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.07 0.72 8.10 -51.92 -0.42 0.30 16 43 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 44 H 0.13 2.64 5.64 -52.49 -0.30 2.34 16 LS Contribution 360.27 15.07 5.43 5.43 Total: -1.00 -30.61 360.27 -9.04 -39.64 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.75 Total: 6.13 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -3.21 Total: -19.36 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: 0.42 Total: -33.02 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.09 Total: -13.72 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.61 -9.04 -39.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067930659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.625 kcal (2) G-P(sol) polarization free energy of solvation -30.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds