Wall clock time and date at job start Tue Mar 31 2020 08:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00164 * 2 1 4 4 H 1.48500 * 109.47130 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47115 * 300.00302 * 3 2 1 6 6 H 1.48499 * 109.46913 * 59.99912 * 3 2 1 7 7 C 1.37876 * 119.99659 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99749 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00264 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47236 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.47125 * 179.97438 * 10 9 7 12 12 C 1.47446 * 110.99937 * 69.16140 * 11 10 9 13 13 C 1.54313 * 107.23439 * 123.25579 * 12 11 10 14 14 C 1.55137 * 103.02122 * 22.28472 * 13 12 11 15 15 C 1.47846 * 110.99776 * 189.99934 * 11 10 9 16 16 H 1.08998 * 110.37824 * 332.58205 * 15 11 10 17 17 C 1.50701 * 110.37511 * 94.81160 * 15 11 10 18 18 O 1.20832 * 119.99619 * 359.97438 * 17 15 11 19 19 O 1.34221 * 120.00460 * 179.97438 * 17 15 11 20 20 C 1.45196 * 117.00244 * 179.97438 * 19 17 15 21 21 C 1.50706 * 109.47291 * 179.97438 * 20 19 17 22 22 C 1.38238 * 119.99775 * 90.00197 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38233 * 120.00212 * 270.02243 * 21 20 19 27 27 H 0.97000 * 119.99918 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47224 * 59.99594 * 9 7 2 29 29 H 1.09007 * 109.46826 * 300.00258 * 9 7 2 30 30 H 1.09005 * 109.47127 * 59.99998 * 10 9 7 31 31 H 1.08998 * 109.47462 * 300.00079 * 10 9 7 32 32 H 1.08997 * 109.88622 * 242.66431 * 12 11 10 33 33 H 1.09002 * 109.88392 * 3.68175 * 12 11 10 34 34 H 1.08996 * 110.70514 * 140.66539 * 13 12 11 35 35 H 1.09001 * 110.70727 * 263.72126 * 13 12 11 36 36 H 1.09004 * 110.98972 * 206.25778 * 14 13 12 37 37 H 1.09001 * 110.99210 * 82.43321 * 14 13 12 38 38 H 1.09003 * 109.47190 * 60.00345 * 20 19 17 39 39 H 1.09002 * 109.47287 * 299.99824 * 20 19 17 40 40 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 41 41 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 44 44 H 1.07999 * 119.99956 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5106 -4.9343 -0.0020 12 6 0.8229 -5.1468 -1.2888 13 6 1.3192 -6.4936 -1.8555 14 6 1.8288 -7.2375 -0.5930 15 6 2.4228 -6.0728 0.2379 16 1 3.4285 -5.8326 -0.1070 17 6 2.4427 -6.4297 1.7019 18 8 1.7674 -5.8049 2.4853 19 8 3.2105 -7.4416 2.1357 20 6 3.1804 -7.7289 3.5586 21 6 4.0967 -8.8877 3.8567 22 6 5.4241 -8.6573 4.1664 23 6 6.2644 -9.7201 4.4403 24 6 5.7773 -11.0133 4.4051 25 6 4.4512 -11.2441 4.0902 26 6 3.6099 -10.1809 3.8200 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5563 -0.8919 29 1 0.6239 -2.5574 0.8881 30 1 2.8712 -3.6047 0.8891 31 1 2.8725 -3.6040 -0.8909 32 1 -0.2549 -5.1853 -1.1312 33 1 1.0680 -4.3387 -1.9780 34 1 0.4998 -7.0412 -2.3209 35 1 2.1296 -6.3370 -2.5673 36 1 2.5985 -7.9644 -0.8523 37 1 1.0053 -7.7154 -0.0624 38 1 2.1634 -7.9845 3.8563 39 1 3.5117 -6.8512 4.1136 40 1 5.8046 -7.6468 4.1943 41 1 7.3015 -9.5401 4.6818 42 1 6.4338 -11.8436 4.6195 43 1 4.0716 -12.2546 4.0584 44 1 2.5731 -10.3610 3.5773 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068856657.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:02 Heat of formation + Delta-G solvation = -58.869484 kcal Electronic energy + Delta-G solvation = -24024.615909 eV Core-core repulsion = 20520.681036 eV Total energy + Delta-G solvation = -3503.934873 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.52008 -39.43763 -38.34454 -36.11276 -33.67682 -32.42376 -31.81124 -31.20837 -29.68321 -28.42205 -26.68030 -24.46712 -22.99083 -22.88755 -21.60533 -21.50892 -20.29664 -19.46367 -17.57801 -17.31392 -16.56395 -16.38907 -16.15288 -15.51632 -15.28143 -15.03533 -14.50824 -14.33155 -13.72815 -13.49544 -13.39797 -13.35008 -13.18988 -12.85307 -12.57070 -12.42307 -12.04521 -11.74241 -11.50282 -11.37177 -11.35019 -11.07080 -11.01352 -10.90324 -10.61006 -10.58039 -10.50144 -10.06907 -9.85410 -9.39904 -9.22093 -9.13116 -9.07914 -8.31239 -7.82508 -5.95894 -3.98309 0.89852 1.10358 2.50081 2.70931 3.33341 3.40524 3.44438 3.56972 4.32650 4.42635 4.51847 4.53138 4.66345 4.69248 4.79403 4.82696 4.99070 5.05232 5.10085 5.21973 5.30369 5.35431 5.39935 5.40925 5.57665 5.65730 5.73576 5.78274 5.88181 5.93348 6.12404 6.17712 6.19317 6.20203 6.28502 6.38222 6.45507 6.53928 6.66824 6.96509 7.37119 7.42992 7.77236 7.93574 8.08752 8.13540 8.46161 9.09035 9.64913 11.15550 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018569 B = 0.002832 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.566804 B = 9885.065541 C =10871.828937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.031 3.969 10 C 0.061 3.939 11 N -0.512 5.512 12 C 0.048 3.952 13 C -0.141 4.141 14 C -0.112 4.112 15 C 0.081 3.919 16 H 0.088 0.912 17 C 0.464 3.536 18 O -0.474 6.474 19 O -0.359 6.359 20 C 0.107 3.893 21 C -0.092 4.092 22 C -0.095 4.095 23 C -0.124 4.124 24 C -0.113 4.113 25 C -0.124 4.124 26 C -0.096 4.096 27 H 0.260 0.740 28 H 0.017 0.983 29 H 0.027 0.973 30 H 0.058 0.942 31 H 0.025 0.975 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.324 -24.010 3.954 26.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.007 4.007 10 C -0.065 4.065 11 N -0.237 5.237 12 C -0.079 4.079 13 C -0.180 4.180 14 C -0.151 4.151 15 C -0.030 4.030 16 H 0.105 0.895 17 C 0.303 3.697 18 O -0.357 6.357 19 O -0.276 6.276 20 C 0.033 3.967 21 C -0.092 4.092 22 C -0.113 4.113 23 C -0.142 4.142 24 C -0.131 4.131 25 C -0.142 4.142 26 C -0.114 4.114 27 H 0.069 0.931 28 H 0.035 0.965 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.593 -23.651 4.641 25.588 hybrid contribution 1.015 1.040 -0.371 1.500 sum 9.607 -22.610 4.270 24.935 Atomic orbital electron populations 1.69992 1.05999 1.26411 1.50711 1.24995 0.94834 0.99156 0.95363 0.86542 0.80057 0.83865 0.77561 1.19804 1.21040 1.20991 1.21212 0.92952 0.91040 1.50768 0.92809 1.19061 0.93864 0.89741 0.98026 1.22553 0.96845 0.88298 0.98828 1.63119 1.27462 1.01087 1.32076 1.22819 0.99809 0.95976 0.89345 1.22837 1.01241 0.96860 0.97031 1.22624 1.00857 0.95943 0.95639 1.22053 0.98682 0.94229 0.87987 0.89475 1.23707 0.76664 0.77224 0.92061 1.90703 1.39029 1.49547 1.56426 1.86552 1.63619 1.50716 1.26759 1.21743 0.99291 0.96112 0.79535 1.19580 0.94451 0.93824 1.01342 1.21150 0.92694 0.99626 0.97878 1.21170 0.99861 0.92668 1.00480 1.21227 0.95727 0.97000 0.99189 1.21157 0.93921 0.98965 1.00204 1.21115 1.00163 0.91848 0.98258 0.93072 0.96453 0.95465 0.92321 0.95709 0.90397 0.91361 0.90470 0.91184 0.89939 0.90401 0.90365 0.90297 0.85658 0.85762 0.85957 0.85798 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.44 13.29 55.43 0.74 -26.70 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.03 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.03 0.82 4.99 -27.89 -0.14 0.68 16 10 C 0.06 1.35 4.47 -3.83 -0.02 1.33 16 11 N -0.51 -9.79 4.34 -224.75 -0.98 -10.77 16 12 C 0.05 0.78 6.20 -2.84 -0.02 0.77 16 13 C -0.14 -1.69 6.94 -24.91 -0.17 -1.87 16 14 C -0.11 -1.36 6.48 -24.59 -0.16 -1.52 16 15 C 0.08 1.26 2.92 -67.33 -0.20 1.06 16 16 H 0.09 1.26 7.81 -51.93 -0.41 0.86 16 17 C 0.46 7.73 7.30 36.01 0.26 7.99 16 18 O -0.47 -9.69 16.23 -18.76 -0.30 -9.99 16 19 O -0.36 -5.05 10.20 -39.23 -0.40 -5.45 16 20 C 0.11 1.29 5.59 36.01 0.20 1.50 16 21 C -0.09 -0.96 5.52 -104.62 -0.58 -1.54 16 22 C -0.10 -0.92 9.70 -39.58 -0.38 -1.30 16 23 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 24 C -0.11 -0.86 10.05 -39.58 -0.40 -1.26 16 25 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 26 C -0.10 -0.88 9.70 -39.58 -0.38 -1.27 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.02 0.48 7.09 -51.93 -0.37 0.11 16 29 H 0.03 0.81 8.14 -51.92 -0.42 0.39 16 30 H 0.06 1.33 8.08 -51.93 -0.42 0.91 16 31 H 0.02 0.52 7.99 -51.93 -0.41 0.10 16 32 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.07 1.19 6.87 -51.93 -0.36 0.83 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.95 8.05 -51.93 -0.42 0.53 16 38 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 39 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 40 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 41 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 43 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 368.55 15.07 5.55 5.55 Total: -1.00 -33.97 368.55 -10.59 -44.57 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -6.99 Total: -2.20 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -3.19 Total: -12.05 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.24 Total: -37.47 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.70 Total: -15.44 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.97 -10.59 -44.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068856657.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.304 kcal (2) G-P(sol) polarization free energy of solvation -33.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds