Wall clock time and date at job start Tue Mar 31 2020 08:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86802 * 119.99681 * 2 1 4 4 H 1.48501 * 109.47262 * 275.16657 * 3 2 1 5 5 H 1.48499 * 109.47260 * 35.17237 * 3 2 1 6 6 H 1.48497 * 109.46951 * 155.17097 * 3 2 1 7 7 C 1.39904 * 120.00477 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99547 * 342.97755 * 7 2 1 9 9 C 1.41144 * 120.00525 * 162.70411 * 7 2 1 10 10 C 1.40874 * 120.16140 * 329.74917 * 9 7 2 11 11 C 1.36381 * 119.82463 * 179.71369 * 10 9 7 12 12 C 1.39476 * 120.17065 * 0.58687 * 11 10 9 13 13 N 1.39234 * 119.83158 * 179.71074 * 12 11 10 14 14 C 1.34773 * 120.00451 * 35.52926 * 13 12 11 15 15 O 1.21282 * 119.99374 * 355.00061 * 14 13 12 16 16 C 1.50693 * 120.00470 * 175.00298 * 14 13 12 17 17 C 1.53004 * 109.47509 * 179.97438 * 16 14 13 18 18 C 1.52995 * 109.47000 * 179.97438 * 17 16 14 19 19 H 1.08993 * 109.48492 * 305.00171 * 18 17 16 20 20 C 1.53094 * 109.47955 * 184.97678 * 18 17 16 21 21 C 1.53174 * 109.16564 * 182.42144 * 20 18 17 22 22 C 1.53175 * 109.04354 * 56.96528 * 21 20 18 23 23 C 1.53089 * 109.16459 * 303.02221 * 22 21 20 24 24 O 1.42900 * 109.48261 * 65.02657 * 18 17 16 25 25 C 1.39485 * 120.33428 * 359.68789 * 12 11 10 26 26 C 1.36378 * 120.16647 * 0.02562 * 25 12 11 27 27 H 0.96997 * 120.00721 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.08495 * 359.97438 * 10 9 7 29 29 H 1.08008 * 119.91264 * 180.31844 * 11 10 9 30 30 H 0.97010 * 119.99924 * 215.52071 * 13 12 11 31 31 H 1.09002 * 109.47287 * 299.99726 * 16 14 13 32 32 H 1.09005 * 109.47333 * 59.99579 * 16 14 13 33 33 H 1.09002 * 109.46824 * 300.00257 * 17 16 14 34 34 H 1.08998 * 109.46607 * 59.99744 * 17 16 14 35 35 H 1.09008 * 109.52405 * 302.31858 * 20 18 17 36 36 H 1.09000 * 109.52025 * 62.50179 * 20 18 17 37 37 H 1.08994 * 109.53332 * 297.09687 * 21 20 18 38 38 H 1.09004 * 109.61572 * 176.87972 * 21 20 18 39 39 H 1.09004 * 109.52447 * 183.11839 * 22 21 20 40 40 H 1.09000 * 109.57709 * 62.96469 * 22 21 20 41 41 H 1.09003 * 109.48434 * 297.62880 * 23 22 21 42 42 H 1.09000 * 109.48533 * 177.59109 * 23 22 21 43 43 H 1.07999 * 119.91739 * 180.02562 * 25 12 11 44 44 H 1.07993 * 120.08465 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.3809 2.1096 -1.3944 5 1 1.4990 2.6187 0.8065 6 1 3.5905 1.4112 0.5879 7 6 2.0083 -1.2115 -0.0005 8 1 1.5038 -2.1266 0.2729 9 6 3.3719 -1.2390 -0.3639 10 6 3.8771 -0.3035 -1.2881 11 6 5.1971 -0.3326 -1.6299 12 6 6.0435 -1.2930 -1.0764 13 7 7.3886 -1.3201 -1.4349 14 6 8.0461 -0.1678 -1.6723 15 8 7.4457 0.8859 -1.6627 16 6 9.5271 -0.1887 -1.9497 17 6 10.0223 1.2399 -2.1844 18 6 11.5261 1.2187 -2.4654 19 1 12.0409 0.7085 -1.6513 20 6 12.0449 2.6547 -2.5772 21 6 13.5379 2.6248 -2.9183 22 6 13.7390 1.8315 -4.2130 23 6 13.1549 0.4272 -4.0378 24 8 11.7720 0.5278 -3.6918 25 6 5.5493 -2.2263 -0.1651 26 6 4.2330 -2.2061 0.1909 27 1 -0.4851 0.8400 0.0004 28 1 3.2218 0.4375 -1.7215 29 1 5.5870 0.3873 -2.3343 30 1 7.8526 -2.1683 -1.5137 31 1 10.0507 -0.6194 -1.0962 32 1 9.7221 -0.7908 -2.8372 33 1 9.4987 1.6703 -3.0380 34 1 9.8273 1.8423 -1.2971 35 1 11.5019 3.1779 -3.3643 36 1 11.8981 3.1699 -1.6279 37 1 14.0873 2.1458 -2.1080 38 1 13.9026 3.6430 -3.0542 39 1 14.8039 1.7581 -4.4336 40 1 13.2310 2.3374 -5.0340 41 1 13.6912 -0.0932 -3.2443 42 1 13.2569 -0.1279 -4.9703 43 1 6.2108 -2.9668 0.2597 44 1 3.8519 -2.9290 0.8968 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069273260.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:57 Heat of formation + Delta-G solvation = -84.267082 kcal Electronic energy + Delta-G solvation = -23914.643627 eV Core-core repulsion = 20409.607431 eV Total energy + Delta-G solvation = -3505.036196 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -39.99893 -39.46235 -37.51054 -34.55410 -34.02915 -33.86306 -33.05884 -30.56894 -29.87551 -29.31495 -26.25860 -24.75300 -23.92260 -22.01852 -21.73470 -20.75566 -20.56027 -19.49397 -17.49505 -17.10027 -16.76754 -16.58594 -15.95954 -15.30867 -15.08393 -14.93299 -14.76042 -14.04838 -13.80383 -13.73389 -13.63021 -13.12299 -12.99189 -12.56706 -12.49045 -12.40632 -12.14452 -12.00036 -11.83888 -11.47514 -11.41366 -11.06903 -10.96254 -10.84964 -10.76041 -10.53467 -10.50637 -10.17473 -9.75876 -9.69859 -9.36966 -9.07586 -8.88423 -7.76073 -7.14055 -6.91993 -4.40422 2.42738 2.74381 3.09738 3.23098 3.29860 3.42536 3.51454 3.67630 4.05539 4.41598 4.45991 4.53376 4.53658 4.61537 4.86405 4.89751 5.05375 5.07478 5.21808 5.29351 5.35065 5.41961 5.45407 5.53241 5.57441 5.67961 5.70460 5.77235 5.91279 5.95481 6.01825 6.19194 6.20795 6.49899 6.73965 6.81585 6.93676 7.00199 7.19993 7.34913 7.53670 7.67826 7.91336 8.09107 8.16306 8.37400 8.62275 8.78003 8.85372 10.09941 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.029780 B = 0.002646 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.992912 B =10579.837110 C =11239.913646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.084 3.916 3 Si 0.911 3.089 4 H -0.270 1.270 5 H -0.292 1.292 6 H -0.243 1.243 7 C -0.444 4.444 8 H 0.091 0.909 9 C 0.087 3.913 10 C -0.230 4.230 11 C -0.062 4.062 12 C -0.009 4.009 13 N -0.655 5.655 14 C 0.498 3.502 15 O -0.534 6.534 16 C -0.135 4.135 17 C -0.095 4.095 18 C 0.090 3.910 19 H 0.058 0.942 20 C -0.152 4.152 21 C -0.123 4.123 22 C -0.158 4.158 23 C 0.061 3.939 24 O -0.377 6.377 25 C -0.095 4.095 26 C -0.198 4.198 27 H 0.285 0.715 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.396 0.604 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.404 1.767 -5.145 25.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.196 1.196 5 H -0.219 1.219 6 H -0.166 1.166 7 C -0.472 4.472 8 H 0.109 0.891 9 C 0.084 3.916 10 C -0.249 4.249 11 C -0.082 4.082 12 C -0.101 4.101 13 N -0.298 5.298 14 C 0.285 3.715 15 O -0.411 6.411 16 C -0.175 4.175 17 C -0.133 4.133 18 C 0.033 3.967 19 H 0.076 0.924 20 C -0.189 4.189 21 C -0.160 4.160 22 C -0.195 4.195 23 C -0.016 4.016 24 O -0.296 6.296 25 C -0.115 4.115 26 C -0.218 4.218 27 H 0.095 0.905 28 H 0.120 0.880 29 H 0.130 0.870 30 H 0.230 0.770 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 24.564 2.544 -5.219 25.241 hybrid contribution 0.718 0.405 0.121 0.833 sum 25.282 2.950 -5.099 25.959 Atomic orbital electron populations 1.69705 1.08062 1.30269 1.35322 1.26166 0.94729 1.01796 0.90807 0.86314 0.81288 0.79627 0.79031 1.19597 1.21933 1.16610 1.19453 0.92872 0.95937 1.38940 0.89127 1.17791 0.93186 0.90967 0.89666 1.20741 0.95230 1.04728 1.04243 1.20481 0.92616 0.97010 0.98099 1.17145 0.82427 1.04505 1.06014 1.42999 1.10244 1.08303 1.68233 1.20699 0.89379 0.83959 0.77446 1.90683 1.69108 1.30768 1.50580 1.21595 0.92572 0.99608 1.03727 1.21360 0.92228 0.96110 1.03600 1.22179 0.96389 0.91644 0.86503 0.92422 1.22208 0.96113 0.97641 1.02966 1.21587 0.96387 1.00625 0.97420 1.22198 1.01373 0.97278 0.98678 1.22539 0.82665 0.95838 1.00581 1.87967 1.24197 1.76668 1.40773 1.20197 0.96035 0.98535 0.96749 1.20594 0.92575 1.04036 1.04612 0.90460 0.88022 0.87025 0.77002 0.89428 0.88509 0.90200 0.89710 0.90804 0.90702 0.91923 0.91518 0.91094 0.91016 0.93372 0.88989 0.88596 0.87829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.00 13.93 55.55 0.77 -21.23 16 2 C 0.08 2.26 5.41 -17.34 -0.09 2.17 16 3 Si 0.91 22.04 24.49 -169.99 -4.16 17.88 16 4 H -0.27 -6.43 6.71 56.52 0.38 -6.05 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.24 -6.17 6.83 56.52 0.39 -5.78 16 7 C -0.44 -12.20 9.56 -37.86 -0.36 -12.56 16 8 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 9 C 0.09 2.27 5.10 -106.80 -0.55 1.72 16 10 C -0.23 -5.88 7.08 -39.25 -0.28 -6.16 16 11 C -0.06 -1.49 8.62 -39.79 -0.34 -1.83 16 12 C -0.01 -0.18 6.30 -83.57 -0.53 -0.71 16 13 N -0.65 -10.89 5.30 -9.74 -0.05 -10.94 16 14 C 0.50 8.28 7.66 -10.99 -0.08 8.19 16 15 O -0.53 -11.22 13.40 5.56 0.07 -11.14 16 16 C -0.13 -1.55 5.60 -27.88 -0.16 -1.71 16 17 C -0.10 -1.09 4.21 -26.73 -0.11 -1.20 16 18 C 0.09 0.85 2.64 -26.69 -0.07 0.78 16 19 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 20 C -0.15 -1.25 5.42 -26.59 -0.14 -1.40 16 21 C -0.12 -0.83 6.03 -26.55 -0.16 -0.99 16 22 C -0.16 -1.04 6.14 -26.59 -0.16 -1.20 16 23 C 0.06 0.45 6.84 37.20 0.25 0.70 16 24 O -0.38 -3.87 9.94 -35.23 -0.35 -4.22 16 25 C -0.10 -1.97 9.90 -39.79 -0.39 -2.37 16 26 C -0.20 -4.61 9.74 -39.26 -0.38 -4.99 16 27 H 0.29 7.04 8.30 -40.82 -0.34 6.70 16 28 H 0.10 2.62 4.70 -52.49 -0.25 2.38 16 29 H 0.11 2.68 6.22 -52.48 -0.33 2.35 16 30 H 0.40 5.00 8.82 -40.82 -0.36 4.64 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.10 1.02 7.82 -51.93 -0.41 0.61 16 33 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 34 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 35 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 44 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 351.62 15.07 5.30 5.30 Total: -1.00 -31.30 351.62 -8.83 -40.13 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.85 Total: 5.80 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -3.56 Total: -21.56 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.72 Total: -32.17 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.28 Total: -15.36 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.16 Total: 17.88 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.30 -8.83 -40.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069273260.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.139 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds