Wall clock time and date at job start Tue Mar 31 2020 08:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 115.54999 * 2 1 4 4 C 1.52995 * 117.49829 * 145.67270 * 2 1 3 5 5 C 1.50693 * 117.50126 * 359.97438 * 4 2 1 6 6 O 1.21289 * 120.00282 * 121.66136 * 5 4 2 7 7 N 1.34778 * 120.00232 * 301.66173 * 5 4 2 8 8 C 1.39917 * 120.00149 * 183.83707 * 7 5 4 9 9 C 1.38959 * 120.03725 * 319.93353 * 8 7 5 10 10 C 1.38158 * 120.06608 * 179.76792 * 9 8 7 11 11 C 1.38163 * 120.14144 * 0.51397 * 10 9 8 12 12 C 1.38911 * 120.06853 * 359.74362 * 11 10 9 13 13 O 1.35756 * 120.03438 * 179.97438 * 12 11 10 14 14 C 1.34826 * 116.99825 * 186.45525 * 13 12 11 15 15 H 1.08003 * 120.00182 * 4.20604 * 14 13 12 16 16 C 1.38660 * 119.99810 * 184.21099 * 14 13 12 17 17 N 1.31552 * 120.00001 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99935 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46963 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.46831 * 119.99836 * 18 16 14 21 21 H 1.48503 * 109.46813 * 239.99896 * 18 16 14 22 22 C 1.38717 * 120.03313 * 140.21372 * 8 7 5 23 23 C 1.53002 * 60.03212 * 107.47842 * 4 2 1 24 24 C 1.53003 * 117.49972 * 107.49845 * 23 4 2 25 25 C 1.53005 * 117.49824 * 252.52374 * 23 4 2 26 26 H 1.08997 * 109.46941 * 327.00925 * 1 2 3 27 27 H 1.08995 * 109.47147 * 87.01092 * 1 2 3 28 28 H 1.08999 * 109.46877 * 207.01072 * 1 2 3 29 29 H 1.08996 * 109.46843 * 154.27631 * 3 2 1 30 30 H 1.08996 * 109.47544 * 274.28200 * 3 2 1 31 31 H 1.09002 * 109.46725 * 34.28561 * 3 2 1 32 32 H 1.09006 * 117.49980 * 214.97477 * 4 2 1 33 33 H 0.97000 * 119.99190 * 3.83746 * 7 5 4 34 34 H 1.07997 * 119.96823 * 0.02562 * 9 8 7 35 35 H 1.08007 * 119.93155 * 180.23362 * 10 9 8 36 36 H 1.07997 * 119.96877 * 179.72303 * 11 10 9 37 37 H 0.96999 * 120.00019 * 180.02562 * 17 16 14 38 38 H 1.07999 * 120.07383 * 359.95687 * 22 8 7 39 39 H 1.09007 * 109.46432 * 111.39350 * 24 23 4 40 40 H 1.09000 * 109.47087 * 231.39106 * 24 23 4 41 41 H 1.08996 * 109.47388 * 351.39564 * 24 23 4 42 42 H 1.09001 * 109.47120 * 8.60302 * 25 23 4 43 43 H 1.08994 * 109.47000 * 128.60574 * 25 23 4 44 44 H 1.09001 * 109.46712 * 248.60953 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2364 -1.1207 0.7653 5 6 1.3721 -2.1398 1.4619 6 8 1.4755 -3.3155 1.1823 7 7 0.4841 -1.7449 2.3957 8 6 -0.2612 -2.6972 3.0995 9 6 -0.7678 -3.8103 2.4398 10 6 -1.4996 -4.7535 3.1352 11 6 -1.7392 -4.5880 4.4858 12 6 -1.2401 -3.4747 5.1500 13 8 -1.4764 -3.3125 6.4769 14 6 -1.0806 -2.1490 7.0314 15 1 -0.6615 -1.3703 6.4113 16 6 -1.2115 -1.9522 8.3977 17 7 -1.7224 -2.9005 9.1528 18 14 -0.6626 -0.3404 9.1660 19 1 -0.1275 0.5549 8.1089 20 1 -1.8208 0.3125 9.8273 21 1 0.3964 -0.6071 10.1723 22 6 -0.5000 -2.5282 4.4555 23 6 2.2367 -1.1220 -0.7647 24 6 3.5494 -0.7779 -1.4713 25 6 1.3588 -2.1576 -1.4704 26 1 -0.3633 0.8619 0.5596 27 1 -0.3633 0.0536 -1.0262 28 1 -0.3633 -0.9156 0.4667 29 1 3.1819 1.3089 0.4460 30 1 2.2774 1.7414 -1.0247 31 1 1.5805 2.0744 0.5789 32 1 3.1716 -0.8748 1.2685 33 1 0.3617 -0.8004 2.5797 34 1 -0.5857 -3.9405 1.3833 35 1 -1.8891 -5.6198 2.6211 36 1 -2.3154 -5.3247 5.0258 37 1 -1.8143 -2.7627 10.1086 38 1 -0.1106 -1.6620 4.9698 39 1 3.9368 -1.6660 -1.9707 40 1 3.3709 0.0048 -2.2086 41 1 4.2758 -0.4276 -0.7380 42 1 0.7294 -2.6610 -0.7366 43 1 0.7296 -1.6587 -2.2075 44 1 1.9921 -2.8908 -1.9699 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074233618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:13 Heat of formation + Delta-G solvation = -19.217439 kcal Electronic energy + Delta-G solvation = -24808.133033 eV Core-core repulsion = 21305.917602 eV Total energy + Delta-G solvation = -3502.215432 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.94745 -39.15667 -38.02262 -36.32543 -34.23119 -32.24964 -31.39004 -29.65793 -28.92169 -28.72873 -27.83607 -26.48025 -25.32537 -23.30425 -21.79146 -21.04460 -19.62007 -18.10825 -17.89656 -17.55841 -16.65652 -15.83519 -15.56527 -15.02628 -14.96009 -14.60178 -14.32331 -14.10749 -13.62615 -13.56247 -13.40111 -12.99997 -12.89194 -12.77334 -12.67575 -12.47922 -12.37753 -12.21718 -12.03483 -11.82627 -11.73494 -11.48498 -11.16106 -11.07077 -10.91500 -10.81275 -10.45278 -10.02610 -9.89786 -9.61122 -9.54633 -9.28091 -8.82159 -7.75989 -7.18183 -6.45875 -4.05389 1.97044 2.36690 2.80505 3.09965 3.11214 3.12602 3.17010 3.40440 3.94839 4.29347 4.37104 4.46988 4.56948 4.77095 4.86787 5.05841 5.11496 5.24904 5.26804 5.33382 5.46361 5.47731 5.59821 5.63629 5.68560 5.71304 5.73590 5.78227 5.80768 5.82724 5.96831 6.02289 6.05131 6.08150 6.23902 6.26405 6.31196 6.64068 6.98668 6.99852 7.12481 7.29684 7.41143 7.70338 7.80671 7.98290 8.35931 8.99621 9.70050 10.72321 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017351 B = 0.003684 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.386366 B = 7598.909509 C = 8762.848026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.109 4.109 3 C -0.115 4.115 4 C -0.174 4.174 5 C 0.545 3.455 6 O -0.515 6.515 7 N -0.667 5.667 8 C 0.176 3.824 9 C -0.200 4.200 10 C -0.065 4.065 11 C -0.198 4.198 12 C 0.167 3.833 13 O -0.177 6.177 14 C -0.392 4.392 15 H 0.091 0.909 16 C 0.039 3.961 17 N -0.862 5.862 18 Si 0.940 3.060 19 H -0.268 1.268 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.252 4.252 23 C -0.086 4.086 24 C -0.114 4.114 25 C -0.123 4.123 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.131 0.869 33 H 0.407 0.593 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.269 0.731 38 H 0.130 0.870 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.658 8.350 -18.851 21.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.109 4.109 3 C -0.172 4.172 4 C -0.195 4.195 5 C 0.332 3.668 6 O -0.390 6.390 7 N -0.312 5.312 8 C 0.084 3.916 9 C -0.221 4.221 10 C -0.084 4.084 11 C -0.218 4.218 12 C 0.112 3.888 13 O -0.080 6.080 14 C -0.468 4.468 15 H 0.108 0.892 16 C -0.165 4.165 17 N -0.497 5.497 18 Si 0.765 3.235 19 H -0.192 1.192 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.274 4.274 23 C -0.087 4.087 24 C -0.171 4.171 25 C -0.179 4.179 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.149 0.851 33 H 0.242 0.758 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.079 0.921 38 H 0.147 0.853 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.616 7.343 -18.644 21.102 hybrid contribution 0.429 1.320 0.689 1.550 sum 7.045 8.663 -17.955 21.144 Atomic orbital electron populations 1.21574 0.91570 1.03017 1.02587 1.21825 0.95145 0.91105 1.02827 1.21366 1.00130 0.93581 1.02082 1.22806 1.01546 0.99717 0.95415 1.19643 0.79296 0.88891 0.78944 1.90717 1.67462 1.18055 1.62734 1.43616 1.39382 1.09799 1.38405 1.17408 0.93286 0.90828 0.90116 1.20542 1.04840 0.96952 0.99772 1.20537 0.96981 0.97697 0.93214 1.20260 1.07706 0.99428 0.94358 1.19085 0.91714 0.92649 0.85303 1.84015 1.70151 1.37753 1.16087 1.21322 1.43066 0.90714 0.91710 0.89209 1.25274 0.96769 0.99322 0.95125 1.70043 1.41204 1.32523 1.05925 0.85665 0.78514 0.80045 0.79281 1.19197 1.20123 1.20150 1.20882 1.09553 1.04441 0.92482 1.21661 0.98123 0.98517 0.90404 1.21354 0.94085 1.01646 0.99978 1.21464 0.99098 0.96960 1.00418 0.91577 0.91691 0.91464 0.92201 0.91872 0.91794 0.85105 0.75772 0.86565 0.86635 0.86374 0.92063 0.85280 0.91866 0.91867 0.92277 0.91092 0.92393 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 8.17 37.16 0.30 -0.91 16 2 C -0.11 -0.99 2.70 -154.47 -0.42 -1.40 16 3 C -0.11 -0.81 8.88 37.16 0.33 -0.48 16 4 C -0.17 -1.97 5.42 -91.78 -0.50 -2.46 16 5 C 0.55 8.25 4.95 -10.99 -0.05 8.20 16 6 O -0.51 -9.56 13.18 5.55 0.07 -9.49 16 7 N -0.67 -10.23 4.10 -9.88 -0.04 -10.27 16 8 C 0.18 3.38 6.20 -83.72 -0.52 2.86 16 9 C -0.20 -3.84 8.67 -39.34 -0.34 -4.18 16 10 C -0.07 -1.24 10.03 -39.64 -0.40 -1.64 16 11 C -0.20 -4.26 9.99 -39.36 -0.39 -4.66 16 12 C 0.17 4.05 6.64 -39.13 -0.26 3.79 16 13 O -0.18 -5.03 9.76 0.04 0.00 -5.03 16 14 C -0.39 -10.86 9.45 30.89 0.29 -10.57 16 15 H 0.09 2.29 5.29 -52.48 -0.28 2.02 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 17 N -0.86 -25.20 13.67 55.48 0.76 -24.44 16 18 Si 0.94 20.30 29.55 -169.99 -5.02 15.28 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 21 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 22 C -0.25 -5.49 9.05 -39.21 -0.35 -5.85 16 23 C -0.09 -0.86 2.70 -154.47 -0.42 -1.27 16 24 C -0.11 -0.89 8.88 37.16 0.33 -0.56 16 25 C -0.12 -1.33 8.46 37.16 0.31 -1.01 16 26 H 0.07 0.54 7.90 -51.93 -0.41 0.13 16 27 H 0.06 0.56 7.95 -51.93 -0.41 0.14 16 28 H 0.07 0.76 5.45 -51.93 -0.28 0.48 16 29 H 0.06 0.40 7.78 -51.93 -0.40 0.00 16 30 H 0.06 0.40 8.03 -51.93 -0.42 -0.02 16 31 H 0.06 0.43 7.91 -51.93 -0.41 0.01 16 32 H 0.13 1.34 7.96 -51.93 -0.41 0.93 16 33 H 0.41 5.18 8.29 -40.82 -0.34 4.85 16 34 H 0.12 2.16 6.63 -52.49 -0.35 1.81 16 35 H 0.12 1.82 8.06 -52.48 -0.42 1.40 16 36 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 37 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.13 2.78 5.71 -52.49 -0.30 2.48 16 39 H 0.06 0.49 7.92 -51.92 -0.41 0.08 16 40 H 0.06 0.42 8.03 -51.93 -0.42 0.00 16 41 H 0.06 0.43 7.78 -51.93 -0.40 0.03 16 42 H 0.07 0.95 5.44 -51.93 -0.28 0.66 16 43 H 0.06 0.54 7.96 -51.93 -0.41 0.12 16 44 H 0.06 0.65 7.92 -51.93 -0.41 0.24 16 LS Contribution 355.65 15.07 5.36 5.36 Total: -1.00 -32.12 355.65 -7.38 -39.50 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -6.34 Total: 8.26 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: -2.18 Total: -19.17 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.72 Total: -34.71 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.07 Total: -14.52 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.12 -7.38 -39.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074233618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.284 kcal (2) G-P(sol) polarization free energy of solvation -32.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds