Wall clock time and date at job start Tue Mar 31 2020 08:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86801 * 120.00027 * 2 1 4 4 H 1.48500 * 109.47078 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.46879 * 119.99798 * 3 2 1 6 6 H 1.48502 * 109.46782 * 239.99512 * 3 2 1 7 7 C 1.39938 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99585 * 205.18129 * 7 2 1 9 9 C 1.41436 * 120.00024 * 25.17446 * 7 2 1 10 10 C 1.40783 * 120.17724 * 26.71182 * 9 7 2 11 11 C 1.37717 * 120.04037 * 180.02562 * 10 9 7 12 12 C 1.38371 * 120.40932 * 359.97438 * 11 10 9 13 13 C 1.39876 * 120.36163 * 359.97438 * 12 11 10 14 14 C 1.47890 * 120.02836 * 180.02562 * 13 12 11 15 15 O 1.21543 * 120.00109 * 180.02562 * 14 13 12 16 16 N 1.34779 * 119.99881 * 0.02562 * 14 13 12 17 17 C 1.46493 * 120.00169 * 179.97438 * 16 14 13 18 18 C 1.52994 * 109.47181 * 180.02562 * 17 16 14 19 19 H 1.09003 * 109.46957 * 304.99735 * 18 17 16 20 20 C 1.53002 * 109.47357 * 64.99998 * 18 17 16 21 21 C 1.53003 * 109.46970 * 180.02562 * 20 18 17 22 22 C 1.53001 * 109.47111 * 299.99765 * 21 20 18 23 23 C 1.53002 * 109.47012 * 60.00260 * 22 21 20 24 24 C 1.52993 * 109.47001 * 299.99790 * 23 22 21 25 25 H 1.08996 * 109.47389 * 299.99841 * 24 23 22 26 26 O 1.42906 * 109.46970 * 179.97438 * 24 23 22 27 27 C 1.39036 * 119.94982 * 359.75127 * 13 12 11 28 28 H 0.96999 * 120.00558 * 185.82876 * 1 2 3 29 29 H 1.07998 * 119.98113 * 0.02562 * 10 9 7 30 30 H 1.07994 * 119.79035 * 179.97438 * 11 10 9 31 31 H 1.08004 * 119.81732 * 180.02562 * 12 11 10 32 32 H 0.97004 * 119.99759 * 0.02562 * 16 14 13 33 33 H 1.09004 * 109.47356 * 300.00025 * 17 16 14 34 34 H 1.09004 * 109.47109 * 59.99565 * 17 16 14 35 35 H 1.09001 * 109.46896 * 300.00201 * 20 18 17 36 36 H 1.08996 * 109.46920 * 59.99993 * 20 18 17 37 37 H 1.09005 * 109.46841 * 179.97438 * 21 20 18 38 38 H 1.08996 * 109.47374 * 60.00186 * 21 20 18 39 39 H 1.09003 * 109.47117 * 300.00110 * 22 21 20 40 40 H 1.08995 * 109.46905 * 180.02562 * 22 21 20 41 41 H 1.08999 * 109.46421 * 179.97438 * 23 22 21 42 42 H 1.08996 * 109.46920 * 59.99918 * 23 22 21 43 43 H 0.96703 * 113.99355 * 60.00420 * 26 24 23 44 44 H 1.08000 * 120.20583 * 180.27243 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 1.2773 2.7465 -0.0006 5 1 3.0960 1.6964 1.2125 6 1 3.0961 1.6963 -1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0110 -1.2561 0.3986 9 6 1.4015 -2.3788 -0.5200 10 6 0.4028 -2.2773 -1.5070 11 6 -0.1862 -3.4153 -2.0115 12 6 0.1973 -4.6639 -1.5547 13 6 1.1886 -4.7846 -0.5752 14 6 1.5932 -6.1227 -0.0928 15 8 2.4543 -6.2270 0.7587 16 7 1.0072 -7.2266 -0.5973 17 6 1.4084 -8.5521 -0.1198 18 6 0.5962 -9.6242 -0.8489 19 1 -0.4676 -9.4212 -0.7249 20 6 0.9486 -9.6065 -2.3377 21 6 0.1358 -10.6783 -3.0669 22 6 0.4637 -12.0533 -2.4816 23 6 0.1113 -12.0710 -0.9928 24 6 0.9240 -10.9993 -0.2636 25 1 1.9876 -11.2028 -0.3876 26 8 0.5945 -11.0155 1.1268 27 6 1.7972 -3.6458 -0.0596 28 1 -0.4851 -0.8356 0.0853 29 1 0.0984 -1.3063 -1.8689 30 1 -0.9522 -3.3327 -2.7683 31 1 -0.2707 -5.5501 -1.9573 32 1 0.3203 -7.1433 -1.2771 33 1 2.4696 -8.7037 -0.3174 34 1 1.2248 -8.6231 0.9523 35 1 0.7146 -8.6270 -2.7548 36 1 2.0123 -9.8096 -2.4617 37 1 0.3866 -10.6654 -4.1277 38 1 -0.9278 -10.4748 -2.9429 39 1 1.5274 -12.2568 -2.6056 40 1 -0.1149 -12.8168 -3.0014 41 1 0.3445 -13.0508 -0.5759 42 1 -0.9523 -11.8675 -0.8688 43 1 0.7764 -11.8585 1.5643 44 1 2.5661 -3.7344 0.6936 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077151049.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:20 Heat of formation + Delta-G solvation = -104.605616 kcal Electronic energy + Delta-G solvation = -24164.116163 eV Core-core repulsion = 20658.198022 eV Total energy + Delta-G solvation = -3505.918141 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.91943 -38.95310 -37.24032 -35.89115 -34.62172 -33.91561 -31.40166 -30.00670 -29.87939 -29.39812 -25.81164 -25.06091 -23.11122 -22.35232 -21.40936 -20.85441 -20.28467 -19.68000 -18.21887 -17.52436 -16.49638 -15.82988 -15.40826 -15.12720 -14.79349 -14.61627 -14.37368 -14.17000 -14.07514 -13.69377 -13.56026 -13.26854 -13.13894 -12.64098 -12.40769 -12.30272 -12.11381 -11.90972 -11.73081 -11.33107 -11.24208 -10.99924 -10.95095 -10.75877 -10.65428 -10.48621 -10.41361 -10.19132 -10.05828 -9.53731 -9.22885 -9.02007 -8.71439 -7.81769 -7.71528 -7.23148 -4.50279 2.06500 2.70425 3.15621 3.21408 3.36004 3.58055 3.78198 3.86870 4.00749 4.29342 4.37893 4.56125 4.64460 4.76773 4.88628 5.01088 5.03578 5.11487 5.14412 5.40685 5.41826 5.51878 5.53758 5.62121 5.72973 5.76026 5.80564 5.90197 5.94960 5.99102 6.11693 6.13090 6.16974 6.67348 6.77427 6.79313 6.90198 7.18116 7.39415 7.53149 7.59133 7.66231 7.76448 7.93873 8.11484 8.18504 8.64662 8.78045 8.83088 10.01594 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.032985 B = 0.002650 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.658552 B =10564.621834 C =11034.862550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.039 3.961 3 Si 1.066 2.934 4 H -0.274 1.274 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.078 0.922 9 C 0.087 3.913 10 C -0.201 4.201 11 C -0.090 4.090 12 C -0.224 4.224 13 C -0.106 4.106 14 C 0.562 3.438 15 O -0.551 6.551 16 N -0.733 5.733 17 C 0.129 3.871 18 C -0.090 4.090 19 H 0.083 0.917 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.118 4.118 23 C -0.150 4.150 24 C 0.113 3.887 25 H 0.057 0.943 26 O -0.563 6.563 27 C -0.155 4.155 28 H 0.299 0.701 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.398 0.602 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.376 0.624 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.400 -20.165 -5.270 20.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.183 4.183 3 Si 0.890 3.110 4 H -0.198 1.198 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.547 4.547 8 H 0.097 0.903 9 C 0.084 3.916 10 C -0.221 4.221 11 C -0.108 4.108 12 C -0.244 4.244 13 C -0.109 4.109 14 C 0.352 3.648 15 O -0.430 6.430 16 N -0.387 5.387 17 C 0.005 3.995 18 C -0.109 4.109 19 H 0.102 0.898 20 C -0.154 4.154 21 C -0.160 4.160 22 C -0.155 4.155 23 C -0.188 4.188 24 C 0.054 3.946 25 H 0.075 0.925 26 O -0.368 6.368 27 C -0.175 4.175 28 H 0.112 0.888 29 H 0.126 0.874 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.234 0.766 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.223 0.777 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.215 -17.985 -4.835 18.663 hybrid contribution -0.101 -2.397 -0.219 2.409 sum -1.316 -20.382 -5.053 21.040 Atomic orbital electron populations 1.70464 1.08193 1.34220 1.29038 1.27045 0.95661 1.04343 0.91254 0.83622 0.75643 0.73689 0.78094 1.19845 1.20039 1.19945 1.20588 1.03111 0.93901 1.37098 0.90346 1.17652 0.91262 0.92362 0.90353 1.21295 1.03167 0.97269 1.00371 1.20528 0.98678 0.92794 0.98849 1.20325 1.03687 0.96171 1.04258 1.19398 1.00144 0.91300 1.00085 1.18825 0.80527 0.84775 0.80628 1.90680 1.32363 1.87517 1.32402 1.45952 1.42956 1.05526 1.44255 1.21225 0.98127 0.80986 0.99174 1.21369 1.01456 0.93292 0.94812 0.89830 1.21625 1.00633 0.99665 0.93475 1.21579 1.00440 0.94386 0.99570 1.21493 1.01628 0.97506 0.94913 1.22263 1.01504 0.98842 0.96215 1.21716 0.97463 0.94427 0.80987 0.92458 1.86579 1.88698 1.39607 1.21964 1.21204 1.03267 0.91124 1.01908 0.88795 0.87390 0.88634 0.89041 0.76576 0.92107 0.90773 0.90862 0.91395 0.91562 0.91696 0.91811 0.91729 0.91702 0.91024 0.77664 0.87339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.00 12.35 55.55 0.69 -20.32 16 2 C 0.04 0.98 4.93 -17.34 -0.09 0.89 16 3 Si 1.07 21.53 30.00 -169.99 -5.10 16.43 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.52 -13.88 8.98 -37.73 -0.34 -14.22 16 8 H 0.08 2.06 7.96 -52.48 -0.42 1.64 16 9 C 0.09 2.30 5.27 -106.87 -0.56 1.74 16 10 C -0.20 -5.02 7.95 -38.81 -0.31 -5.33 16 11 C -0.09 -1.97 10.01 -39.72 -0.40 -2.37 16 12 C -0.22 -4.68 9.55 -38.92 -0.37 -5.05 16 13 C -0.11 -2.44 5.87 -105.04 -0.62 -3.06 16 14 C 0.56 12.00 7.77 -12.31 -0.10 11.91 16 15 O -0.55 -13.45 16.33 5.33 0.09 -13.36 16 16 N -0.73 -11.94 5.23 -61.24 -0.32 -12.26 16 17 C 0.13 1.82 4.99 -4.05 -0.02 1.80 16 18 C -0.09 -0.94 1.96 -90.62 -0.18 -1.12 16 19 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 20 C -0.12 -1.04 5.08 -26.73 -0.14 -1.18 16 21 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 22 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 23 C -0.15 -1.04 5.54 -26.73 -0.15 -1.19 16 24 C 0.11 1.00 2.90 -26.73 -0.08 0.92 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 O -0.56 -5.54 12.56 -35.23 -0.44 -5.99 16 27 C -0.15 -3.98 9.34 -38.44 -0.36 -4.34 16 28 H 0.30 8.07 6.73 -40.82 -0.27 7.80 16 29 H 0.11 2.75 6.57 -52.49 -0.34 2.41 16 30 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.09 1.56 6.38 -52.48 -0.33 1.23 16 32 H 0.40 5.62 5.67 -40.82 -0.23 5.39 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.20 7.54 -51.93 -0.39 0.81 16 35 H 0.07 0.70 7.18 -51.93 -0.37 0.32 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.38 2.04 9.08 45.56 0.41 2.46 16 44 H 0.11 2.86 7.64 -52.49 -0.40 2.46 16 LS Contribution 354.01 15.07 5.33 5.33 Total: -1.00 -30.90 354.01 -9.57 -40.47 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -5.80 Total: 12.25 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -4.01 Total: -22.56 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.37 Total: -32.58 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.36 Total: -19.34 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.10 Total: 16.43 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.90 -9.57 -40.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077151049.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.140 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds