Wall clock time and date at job start Tue Mar 31 2020 08:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86801 * 120.00027 * 2 1 4 4 H 1.48500 * 109.47078 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.46879 * 119.99798 * 3 2 1 6 6 H 1.48502 * 109.46782 * 239.99512 * 3 2 1 7 7 C 1.39938 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99585 * 205.18129 * 7 2 1 9 9 C 1.41436 * 120.00024 * 25.17446 * 7 2 1 10 10 C 1.40783 * 120.17724 * 26.71182 * 9 7 2 11 11 C 1.37717 * 120.04037 * 180.02562 * 10 9 7 12 12 C 1.38371 * 120.40932 * 359.97438 * 11 10 9 13 13 C 1.39876 * 120.36163 * 359.97438 * 12 11 10 14 14 C 1.47890 * 120.02836 * 180.02562 * 13 12 11 15 15 O 1.21543 * 120.00109 * 180.02562 * 14 13 12 16 16 N 1.34779 * 119.99881 * 0.02562 * 14 13 12 17 17 C 1.46493 * 120.00169 * 179.97438 * 16 14 13 18 18 C 1.52994 * 109.47181 * 180.02562 * 17 16 14 19 19 H 1.09003 * 109.46957 * 304.99735 * 18 17 16 20 20 C 1.53002 * 109.47357 * 64.99998 * 18 17 16 21 21 C 1.53003 * 109.46970 * 180.02562 * 20 18 17 22 22 C 1.53001 * 109.47111 * 299.99765 * 21 20 18 23 23 C 1.53002 * 109.47012 * 60.00260 * 22 21 20 24 24 C 1.52993 * 109.47001 * 299.99790 * 23 22 21 25 25 H 1.08996 * 109.47389 * 299.99841 * 24 23 22 26 26 O 1.42906 * 109.46970 * 179.97438 * 24 23 22 27 27 C 1.39036 * 119.94982 * 359.75127 * 13 12 11 28 28 H 0.96999 * 120.00558 * 185.82876 * 1 2 3 29 29 H 1.07998 * 119.98113 * 0.02562 * 10 9 7 30 30 H 1.07994 * 119.79035 * 179.97438 * 11 10 9 31 31 H 1.08004 * 119.81732 * 180.02562 * 12 11 10 32 32 H 0.97004 * 119.99759 * 0.02562 * 16 14 13 33 33 H 1.09004 * 109.47356 * 300.00025 * 17 16 14 34 34 H 1.09004 * 109.47109 * 59.99565 * 17 16 14 35 35 H 1.09001 * 109.46896 * 300.00201 * 20 18 17 36 36 H 1.08996 * 109.46920 * 59.99993 * 20 18 17 37 37 H 1.09005 * 109.46841 * 179.97438 * 21 20 18 38 38 H 1.08996 * 109.47374 * 60.00186 * 21 20 18 39 39 H 1.09003 * 109.47117 * 300.00110 * 22 21 20 40 40 H 1.08995 * 109.46905 * 180.02562 * 22 21 20 41 41 H 1.08999 * 109.46421 * 179.97438 * 23 22 21 42 42 H 1.08996 * 109.46920 * 59.99918 * 23 22 21 43 43 H 0.96703 * 113.99355 * 60.00420 * 26 24 23 44 44 H 1.08000 * 120.20583 * 180.27243 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 1.2773 2.7465 -0.0006 5 1 3.0960 1.6964 1.2125 6 1 3.0961 1.6963 -1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0110 -1.2561 0.3986 9 6 1.4015 -2.3788 -0.5200 10 6 0.4028 -2.2773 -1.5070 11 6 -0.1862 -3.4153 -2.0115 12 6 0.1973 -4.6639 -1.5547 13 6 1.1886 -4.7846 -0.5752 14 6 1.5932 -6.1227 -0.0928 15 8 2.4543 -6.2270 0.7587 16 7 1.0072 -7.2266 -0.5973 17 6 1.4084 -8.5521 -0.1198 18 6 0.5962 -9.6242 -0.8489 19 1 -0.4676 -9.4212 -0.7249 20 6 0.9486 -9.6065 -2.3377 21 6 0.1358 -10.6783 -3.0669 22 6 0.4637 -12.0533 -2.4816 23 6 0.1113 -12.0710 -0.9928 24 6 0.9240 -10.9993 -0.2636 25 1 1.9876 -11.2028 -0.3876 26 8 0.5945 -11.0155 1.1268 27 6 1.7972 -3.6458 -0.0596 28 1 -0.4851 -0.8356 0.0853 29 1 0.0984 -1.3063 -1.8689 30 1 -0.9522 -3.3327 -2.7683 31 1 -0.2707 -5.5501 -1.9573 32 1 0.3203 -7.1433 -1.2771 33 1 2.4696 -8.7037 -0.3174 34 1 1.2248 -8.6231 0.9523 35 1 0.7146 -8.6270 -2.7548 36 1 2.0123 -9.8096 -2.4617 37 1 0.3866 -10.6654 -4.1277 38 1 -0.9278 -10.4748 -2.9429 39 1 1.5274 -12.2568 -2.6056 40 1 -0.1149 -12.8168 -3.0014 41 1 0.3445 -13.0508 -0.5759 42 1 -0.9523 -11.8675 -0.8688 43 1 0.7764 -11.8585 1.5643 44 1 2.5661 -3.7344 0.6936 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077151049.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:19 Heat of formation + Delta-G solvation = -124.782500 kcal Electronic energy + Delta-G solvation = -24164.991098 eV Core-core repulsion = 20658.198022 eV Total energy + Delta-G solvation = -3506.793076 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.21241 -40.14052 -39.05655 -36.68038 -35.95039 -35.72864 -32.59325 -31.77758 -31.16118 -30.53908 -27.21954 -26.72155 -24.31726 -23.40341 -22.86644 -22.19128 -21.53140 -20.83220 -19.98211 -18.24065 -18.14040 -17.30344 -16.68816 -16.39383 -16.18374 -15.92692 -15.86693 -15.39349 -15.33841 -14.91458 -14.76650 -14.40571 -14.33180 -14.09693 -13.86571 -13.83038 -13.16109 -13.02243 -12.89916 -12.73077 -12.46110 -12.37609 -12.14011 -12.02129 -11.93778 -11.61662 -11.43862 -11.39484 -11.20639 -11.00107 -10.87702 -10.69453 -10.22320 -9.72334 -9.61305 -9.21521 -6.53502 0.19618 0.82709 1.50437 1.57979 1.80276 2.00055 2.14302 2.32515 2.67885 3.23042 3.46280 3.52453 3.71863 3.87513 3.96216 4.14741 4.22026 4.26158 4.27150 4.37074 4.38990 4.43209 4.53570 4.60813 4.69616 4.79061 4.90103 4.93172 4.97007 5.01079 5.15181 5.17225 5.19760 5.25059 5.29545 5.32214 5.37796 5.51816 5.62724 5.65036 5.71067 5.79188 6.12460 6.21231 6.52236 6.68592 6.82817 6.90056 7.17827 8.00637 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.032985 B = 0.002650 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.658552 B =10564.621834 C =11034.862550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.007 3.993 3 Si 1.117 2.883 4 H -0.267 1.267 5 H -0.263 1.263 6 H -0.262 1.262 7 C -0.561 4.561 8 H 0.066 0.934 9 C 0.063 3.937 10 C -0.211 4.211 11 C -0.088 4.088 12 C -0.197 4.197 13 C -0.112 4.112 14 C 0.559 3.441 15 O -0.590 6.590 16 N -0.708 5.708 17 C 0.130 3.870 18 C -0.083 4.083 19 H 0.082 0.918 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.117 4.117 23 C -0.143 4.143 24 C 0.112 3.888 25 H 0.061 0.939 26 O -0.587 6.587 27 C -0.188 4.188 28 H 0.284 0.716 29 H 0.098 0.902 30 H 0.137 0.863 31 H 0.142 0.858 32 H 0.412 0.588 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.394 0.606 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.607 -22.249 -7.313 23.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.209 4.209 3 Si 0.934 3.066 4 H -0.191 1.191 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.590 4.590 8 H 0.084 0.916 9 C 0.060 3.940 10 C -0.230 4.230 11 C -0.106 4.106 12 C -0.217 4.217 13 C -0.115 4.115 14 C 0.349 3.651 15 O -0.472 6.472 16 N -0.361 5.361 17 C 0.006 3.994 18 C -0.102 4.102 19 H 0.100 0.900 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.155 4.155 23 C -0.181 4.181 24 C 0.053 3.947 25 H 0.079 0.921 26 O -0.395 6.395 27 C -0.208 4.208 28 H 0.096 0.904 29 H 0.116 0.884 30 H 0.155 0.845 31 H 0.160 0.840 32 H 0.251 0.749 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.244 0.756 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.454 -20.139 -6.903 21.430 hybrid contribution 0.221 -1.997 0.387 2.046 sum -2.232 -22.136 -6.515 23.183 Atomic orbital electron populations 1.70583 1.08695 1.33107 1.31348 1.28424 0.95714 1.07199 0.89602 0.83005 0.74798 0.69768 0.79030 1.19099 1.18733 1.18638 1.20753 1.03180 0.95423 1.39616 0.91599 1.17923 0.92243 0.92635 0.91196 1.21359 1.03155 0.98170 1.00345 1.20974 0.98705 0.91927 0.98953 1.20852 1.01345 0.97785 1.01682 1.19677 1.00146 0.91454 1.00247 1.18672 0.80536 0.85391 0.80531 1.90663 1.34251 1.87985 1.34252 1.45770 1.41888 1.05130 1.43263 1.21345 0.98746 0.80724 0.98557 1.21351 1.00434 0.92826 0.95547 0.89964 1.21625 1.01026 1.00289 0.92339 1.21567 1.00126 0.94137 0.99859 1.21509 1.02130 0.97336 0.94477 1.22197 1.00669 0.98811 0.96402 1.21754 0.98134 0.93956 0.80852 0.92077 1.86532 1.88906 1.41411 1.22694 1.21145 1.04337 0.92371 1.02962 0.90436 0.88421 0.84514 0.84036 0.74917 0.92535 0.92885 0.91228 0.91430 0.90661 0.91541 0.91434 0.90462 0.90018 0.91552 0.75608 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.17 12.35 21.82 0.27 -43.90 16 2 C 0.01 0.34 4.93 85.25 0.42 0.77 16 3 Si 1.12 44.03 30.00 68.60 2.06 46.09 16 4 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 5 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 6 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 7 C -0.56 -31.63 8.98 23.47 0.21 -31.42 16 8 H 0.07 3.72 7.96 -2.91 -0.02 3.69 16 9 C 0.06 3.46 5.27 -21.32 -0.11 3.35 16 10 C -0.21 -10.56 7.95 22.77 0.18 -10.38 16 11 C -0.09 -3.62 10.01 22.18 0.22 -3.40 16 12 C -0.20 -7.64 9.55 22.70 0.22 -7.43 16 13 C -0.11 -5.14 5.87 -20.13 -0.12 -5.26 16 14 C 0.56 23.80 7.77 86.80 0.67 24.47 16 15 O -0.59 -29.62 16.33 -3.85 -0.06 -29.68 16 16 N -0.71 -21.87 5.23 -465.95 -2.44 -24.31 16 17 C 0.13 3.54 4.99 86.38 0.43 3.97 16 18 C -0.08 -1.55 1.96 -10.79 -0.02 -1.57 16 19 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 20 C -0.12 -1.75 5.08 30.60 0.16 -1.59 16 21 C -0.12 -1.34 5.92 30.60 0.18 -1.16 16 22 C -0.12 -1.12 5.92 30.60 0.18 -0.93 16 23 C -0.14 -1.55 5.54 30.59 0.17 -1.38 16 24 C 0.11 1.74 2.90 30.59 0.09 1.83 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 26 O -0.59 -10.70 12.56 -148.98 -1.87 -12.58 16 27 C -0.19 -10.10 9.34 23.01 0.21 -9.89 16 28 H 0.28 15.92 6.73 -92.71 -0.62 15.29 16 29 H 0.10 5.06 6.57 -2.91 -0.02 5.04 16 30 H 0.14 4.56 8.06 -2.91 -0.02 4.53 16 31 H 0.14 4.06 6.38 -2.91 -0.02 4.04 16 32 H 0.41 10.26 5.67 -92.71 -0.53 9.73 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 1.71 7.54 -2.38 -0.02 1.69 16 35 H 0.07 1.10 7.18 -2.39 -0.02 1.08 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.39 3.64 9.08 -74.06 -0.67 2.96 16 44 H 0.08 4.81 7.64 -2.91 -0.02 4.78 16 Total: -1.00 -70.89 354.01 1.01 -69.88 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: -0.04 Total: 34.52 kcal Atomic # 6 Polarization: -43.11 SS G_CDS: 3.10 Total: -40.01 kcal Atomic # 7 Polarization: -66.04 SS G_CDS: -2.17 Total: -68.21 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -1.93 Total: -42.25 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.06 Total: 46.09 kcal Total: -70.89 1.01 -69.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077151049.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.907 kcal (2) G-P(sol) polarization free energy of solvation -70.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds