Wall clock time and date at job start Tue Mar 31 2020 08:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38396 * 120.11481 * 2 1 4 4 C 1.37704 * 119.97659 * 180.02562 * 3 2 1 5 5 C 1.38925 * 120.78562 * 0.33879 * 4 3 2 6 6 C 1.39236 * 118.87794 * 359.50077 * 5 4 3 7 7 C 1.37978 * 120.24148 * 0.32734 * 6 5 4 8 8 C 1.50700 * 119.82774 * 180.02562 * 7 6 5 9 9 O 1.36138 * 111.22311 * 178.95151 * 5 4 3 10 10 C 1.43769 * 109.24364 * 19.01671 * 9 5 4 11 11 H 1.09002 * 110.74706 * 213.92993 * 10 9 5 12 12 C 1.50702 * 110.90603 * 90.65471 * 10 9 5 13 13 O 1.21284 * 119.99704 * 359.02322 * 12 10 9 14 14 N 1.34770 * 120.00081 * 179.02329 * 12 10 9 15 15 C 1.46497 * 120.00381 * 359.97438 * 14 12 10 16 16 C 1.46501 * 119.99866 * 179.97438 * 14 12 10 17 17 H 1.09000 * 109.47468 * 0.02562 * 16 14 12 18 18 C 1.53007 * 109.47130 * 120.00244 * 16 14 12 19 19 C 1.50702 * 109.47380 * 239.99776 * 16 14 12 20 20 H 1.08004 * 119.99651 * 0.02562 * 19 16 14 21 21 C 1.37872 * 120.00574 * 179.97438 * 19 16 14 22 22 N 1.31514 * 119.99608 * 0.02562 * 21 19 16 23 23 Si 1.86794 * 120.00501 * 180.02562 * 21 19 16 24 24 H 1.48499 * 109.47172 * 60.00035 * 23 21 19 25 25 H 1.48496 * 109.47573 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47146 * 300.00381 * 23 21 19 27 27 C 1.51641 * 132.17628 * 180.36615 * 4 3 2 28 28 H 1.08996 * 109.47359 * 89.99546 * 1 2 3 29 29 H 1.08996 * 109.46836 * 210.00022 * 1 2 3 30 30 H 1.09004 * 109.46881 * 329.98929 * 1 2 3 31 31 H 1.07995 * 120.01216 * 0.02562 * 3 2 1 32 32 H 1.08004 * 119.88574 * 180.32965 * 6 5 4 33 33 H 1.08999 * 109.47516 * 269.98154 * 8 7 6 34 34 H 1.09000 * 109.46967 * 29.97977 * 8 7 6 35 35 H 1.09005 * 109.46794 * 149.98064 * 8 7 6 36 36 H 1.09002 * 109.47226 * 89.99872 * 15 14 12 37 37 H 1.08998 * 109.47683 * 210.00259 * 15 14 12 38 38 H 1.09008 * 109.47033 * 330.00442 * 15 14 12 39 39 H 1.09000 * 109.47075 * 59.99600 * 18 16 14 40 40 H 1.08999 * 109.46862 * 179.97438 * 18 16 14 41 41 H 1.09006 * 109.46606 * 299.99905 * 18 16 14 42 42 H 0.97005 * 120.00321 * 179.97438 * 22 21 19 43 43 H 1.08996 * 110.94086 * 46.43209 * 27 4 3 44 44 H 1.08999 * 110.96813 * 282.76047 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.1972 0.0000 4 6 3.5784 1.1938 -0.0005 5 6 4.2866 -0.0013 -0.0081 6 6 3.5805 -1.2014 -0.0046 7 6 2.2007 -1.1958 -0.0006 8 6 1.4459 -2.5001 0.0038 9 8 5.6294 0.2216 -0.0305 10 6 5.8937 1.5666 0.4033 11 1 6.7549 1.9795 -0.1219 12 6 6.1049 1.6189 1.8945 13 8 6.0219 0.6049 2.5547 14 7 6.3860 2.7925 2.4945 15 6 6.4869 4.0173 1.6971 16 6 6.5908 2.8434 3.9443 17 1 6.4774 1.8433 4.3626 18 6 7.9983 3.3640 4.2426 19 6 5.5725 3.7659 4.5634 20 1 4.8452 4.2640 3.9393 21 6 5.5685 3.9731 5.9264 22 7 6.4538 3.3661 6.6863 23 14 4.3059 5.1159 6.6939 24 1 2.9400 4.6105 6.4040 25 1 4.5135 5.1677 8.1633 26 1 4.4607 6.4786 6.1243 27 6 4.5992 2.3151 0.0065 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5140 31 1 1.6635 2.1336 0.0004 32 1 4.1146 -2.1401 -0.0050 33 1 1.2605 -2.8162 -1.0227 34 1 2.0358 -3.2596 0.5169 35 1 0.4952 -2.3680 0.5206 36 1 5.5077 4.4921 1.6351 37 1 7.1929 4.7008 2.1686 38 1 6.8349 3.7702 0.6941 39 1 8.1121 4.3640 3.8241 40 1 8.1505 3.4023 5.3212 41 1 8.7349 2.6968 3.7948 42 1 6.4514 3.5121 7.6453 43 1 4.3430 3.0706 0.7492 44 1 4.6952 2.7615 -0.9833 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080027940.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:47 Heat of formation + Delta-G solvation = -41.356532 kcal Electronic energy + Delta-G solvation = -25340.353564 eV Core-core repulsion = 21837.178109 eV Total energy + Delta-G solvation = -3503.175455 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.31582 -38.96484 -37.72641 -35.34301 -33.39419 -32.82761 -31.93687 -30.97880 -29.20826 -26.94231 -26.60260 -26.16533 -25.23090 -23.42839 -22.03406 -21.21173 -20.28243 -18.68556 -17.24411 -16.76390 -16.46128 -16.20465 -15.41602 -15.05556 -14.89040 -14.44711 -14.31237 -13.95552 -13.67649 -13.52562 -13.08784 -12.81948 -12.72311 -12.62973 -12.55418 -12.38444 -12.11228 -12.00268 -11.70332 -11.56692 -11.32442 -11.28847 -11.08396 -10.91724 -10.84268 -10.73385 -10.62021 -10.28431 -10.18704 -9.21746 -8.98450 -8.62071 -8.44839 -7.77999 -7.66383 -6.08926 -4.17304 1.36574 1.48674 3.11333 3.26264 3.28002 3.31837 3.35783 3.78947 3.89043 4.37185 4.46970 4.60500 4.85583 4.92334 4.95132 5.08174 5.16133 5.22352 5.25419 5.37491 5.46322 5.56571 5.61790 5.63244 5.63672 5.73175 5.81108 5.83297 5.96437 5.98513 6.21074 6.23755 6.36507 6.53097 6.64061 6.72543 6.75997 6.78921 7.01711 7.29495 7.38825 7.47505 7.68113 7.98452 8.15833 8.44333 8.78872 8.96266 9.49026 10.96424 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015344 B = 0.004382 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.410383 B = 6387.913147 C = 7223.562612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.121 4.121 3 C -0.064 4.064 4 C -0.172 4.172 5 C 0.118 3.882 6 C -0.132 4.132 7 C -0.056 4.056 8 C -0.114 4.114 9 O -0.279 6.279 10 C 0.063 3.937 11 H 0.134 0.866 12 C 0.489 3.511 13 O -0.532 6.532 14 N -0.588 5.588 15 C 0.082 3.918 16 C 0.258 3.742 17 H 0.063 0.937 18 C -0.147 4.147 19 C -0.526 4.526 20 H 0.058 0.942 21 C 0.065 3.935 22 N -0.887 5.887 23 Si 0.899 3.101 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.276 1.276 27 C -0.099 4.099 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.077 0.923 38 H 0.051 0.949 39 H 0.031 0.969 40 H 0.094 0.906 41 H 0.012 0.988 42 H 0.264 0.736 43 H 0.101 0.899 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.179 -2.953 -16.195 17.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.121 4.121 3 C -0.082 4.082 4 C -0.173 4.173 5 C 0.072 3.928 6 C -0.151 4.151 7 C -0.056 4.056 8 C -0.171 4.171 9 O -0.191 6.191 10 C 0.003 3.997 11 H 0.151 0.849 12 C 0.273 3.727 13 O -0.409 6.409 14 N -0.321 5.321 15 C -0.062 4.062 16 C 0.159 3.841 17 H 0.081 0.919 18 C -0.206 4.206 19 C -0.565 4.565 20 H 0.076 0.924 21 C -0.137 4.137 22 N -0.525 5.525 23 Si 0.726 3.274 24 H -0.203 1.203 25 H -0.211 1.211 26 H -0.202 1.202 27 C -0.137 4.137 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.113 0.887 41 H 0.031 0.969 42 H 0.074 0.926 43 H 0.120 0.880 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.962 -3.654 -15.675 17.536 hybrid contribution -0.491 1.016 0.553 1.256 sum -7.453 -2.638 -15.122 17.064 Atomic orbital electron populations 1.20740 0.91058 1.02772 1.01874 1.19534 0.95895 0.92144 1.04571 1.20086 0.91610 0.97819 0.98688 1.20677 0.94670 0.94368 1.07568 1.19483 0.83163 0.94473 0.95657 1.20029 0.92723 0.95693 1.06659 1.19371 0.92266 0.95156 0.98778 1.20843 1.00095 0.93871 1.02252 1.86874 1.20252 1.31678 1.80294 1.23391 1.00108 0.81340 0.94825 0.84855 1.20530 0.78628 0.84585 0.88924 1.90691 1.51037 1.33833 1.65299 1.48219 1.67542 1.05722 1.10568 1.21680 1.01855 0.88539 0.94105 1.18970 0.93234 0.99183 0.72743 0.91930 1.22103 0.96405 0.97606 1.04460 1.21245 1.15290 1.27548 0.92376 0.92361 1.24885 0.95872 0.95995 0.96968 1.69868 1.34800 1.42509 1.05362 0.86551 0.81751 0.80933 0.78130 1.20261 1.21129 1.20205 1.21795 0.90951 0.97346 1.03574 0.91574 0.91301 0.91757 0.85882 0.85573 0.91106 0.91429 0.90951 0.92962 0.90455 0.93012 0.95017 0.88703 0.96907 0.92591 0.88025 0.88457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.61 36.00 0.35 -0.70 16 2 C -0.12 -1.59 5.89 -104.56 -0.62 -2.20 16 3 C -0.06 -0.90 9.70 -39.72 -0.39 -1.29 16 4 C -0.17 -2.73 6.26 -104.10 -0.65 -3.38 16 5 C 0.12 2.05 6.88 -38.96 -0.27 1.78 16 6 C -0.13 -2.06 9.71 -39.31 -0.38 -2.44 16 7 C -0.06 -0.75 5.87 -104.71 -0.61 -1.36 16 8 C -0.11 -1.12 9.59 36.01 0.35 -0.77 16 9 O -0.28 -5.08 10.43 -39.14 -0.41 -5.49 16 10 C 0.06 1.04 3.13 -26.98 -0.08 0.95 16 11 H 0.13 1.69 7.21 -51.93 -0.37 1.32 16 12 C 0.49 10.51 6.97 -10.99 -0.08 10.43 16 13 O -0.53 -14.03 15.83 -13.41 -0.21 -14.25 16 14 N -0.59 -12.43 2.75 -175.26 -0.48 -12.91 16 15 C 0.08 1.30 8.42 59.85 0.50 1.80 16 16 C 0.26 6.62 2.64 -69.08 -0.18 6.44 16 17 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 18 C -0.15 -3.50 8.95 37.16 0.33 -3.17 16 19 C -0.53 -14.16 8.37 -34.44 -0.29 -14.45 16 20 H 0.06 1.53 7.65 -52.48 -0.40 1.13 16 21 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 22 N -0.89 -25.15 11.32 55.43 0.63 -24.52 16 23 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 C -0.10 -1.39 6.00 -26.52 -0.16 -1.55 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.59 5.94 -51.93 -0.31 0.29 16 30 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.13 1.79 8.06 -52.48 -0.42 1.36 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 35 H 0.07 0.62 5.94 -51.93 -0.31 0.31 16 36 H 0.05 0.78 7.27 -51.93 -0.38 0.41 16 37 H 0.08 1.24 6.43 -51.93 -0.33 0.90 16 38 H 0.05 0.61 6.26 -51.92 -0.32 0.29 16 39 H 0.03 0.68 6.66 -51.93 -0.35 0.34 16 40 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 41 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.10 1.47 6.24 -51.93 -0.32 1.15 16 44 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 350.19 15.07 5.28 5.28 Total: -1.00 -33.44 350.19 -8.78 -42.21 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.28 Total: 1.92 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -2.27 Total: -8.22 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.15 Total: -37.43 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.62 Total: -19.74 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.44 -8.78 -42.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080027940.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.854 kcal (2) G-P(sol) polarization free energy of solvation -33.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds