Wall clock time and date at job start Tue Mar 31 2020 08:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38394 * 120.11420 * 2 1 4 4 C 1.37697 * 119.97313 * 179.97438 * 3 2 1 5 5 C 1.38922 * 120.79146 * 0.31177 * 4 3 2 6 6 C 1.39249 * 118.87450 * 359.63142 * 5 4 3 7 7 C 1.37969 * 120.23919 * 0.44460 * 6 5 4 8 8 C 1.50695 * 119.82528 * 179.79476 * 7 6 5 9 9 O 1.36130 * 111.23614 * 179.28886 * 5 4 3 10 10 C 1.43774 * 109.26038 * 18.85600 * 9 5 4 11 11 H 1.09002 * 110.74507 * 90.65516 * 10 9 5 12 12 C 1.50698 * 110.74921 * 213.81812 * 10 9 5 13 13 O 1.21286 * 119.99973 * 3.54500 * 12 10 9 14 14 N 1.34775 * 120.00033 * 183.54362 * 12 10 9 15 15 C 1.46497 * 119.99944 * 0.02562 * 14 12 10 16 16 C 1.46498 * 119.99981 * 179.97438 * 14 12 10 17 17 H 1.08999 * 109.47174 * 0.02562 * 16 14 12 18 18 C 1.53001 * 109.46893 * 120.00090 * 16 14 12 19 19 C 1.50696 * 109.47345 * 240.00114 * 16 14 12 20 20 H 1.08006 * 119.99918 * 0.02562 * 19 16 14 21 21 C 1.37879 * 120.00011 * 180.02562 * 19 16 14 22 22 N 1.31513 * 119.99791 * 180.02562 * 21 19 16 23 23 Si 1.86794 * 120.00128 * 0.02562 * 21 19 16 24 24 H 1.48508 * 109.46782 * 89.99964 * 23 21 19 25 25 H 1.48501 * 109.47586 * 210.00041 * 23 21 19 26 26 H 1.48500 * 109.47392 * 330.00155 * 23 21 19 27 27 C 1.51641 * 132.17773 * 180.54735 * 4 3 2 28 28 H 1.09003 * 109.46987 * 90.00037 * 1 2 3 29 29 H 1.09002 * 109.47162 * 209.99530 * 1 2 3 30 30 H 1.08992 * 109.47349 * 330.00196 * 1 2 3 31 31 H 1.07997 * 120.01607 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.87810 * 180.15782 * 6 5 4 33 33 H 1.09001 * 109.47404 * 89.99521 * 8 7 6 34 34 H 1.08998 * 109.47287 * 209.99739 * 8 7 6 35 35 H 1.09002 * 109.47031 * 329.99728 * 8 7 6 36 36 H 1.08999 * 109.47823 * 89.99721 * 15 14 12 37 37 H 1.08999 * 109.46757 * 210.00198 * 15 14 12 38 38 H 1.09007 * 109.46700 * 329.99131 * 15 14 12 39 39 H 1.09007 * 109.46958 * 60.00309 * 18 16 14 40 40 H 1.09004 * 109.47304 * 179.97438 * 18 16 14 41 41 H 1.09000 * 109.47236 * 300.00263 * 18 16 14 42 42 H 0.97002 * 119.99928 * 179.97438 * 22 21 19 43 43 H 1.09004 * 110.94292 * 46.12306 * 27 4 3 44 44 H 1.09002 * 110.97236 * 282.45514 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.1971 0.0000 4 6 3.5783 1.1938 0.0005 5 6 4.2865 -0.0014 -0.0054 6 6 3.5803 -1.2015 -0.0041 7 6 2.2007 -1.1958 -0.0063 8 6 1.4458 -2.5001 -0.0095 9 8 5.6294 0.2213 -0.0195 10 6 5.8917 1.5665 0.4150 11 1 6.0373 1.6021 1.4947 12 6 7.0888 2.1354 -0.3021 13 8 7.6427 1.4881 -1.1653 14 7 7.5438 3.3636 0.0157 15 6 6.8751 4.1452 1.0588 16 6 8.7079 3.9164 -0.6810 17 1 9.0671 3.1962 -1.4162 18 6 8.3099 5.2126 -1.3898 19 6 9.8004 4.2042 0.3163 20 1 9.6434 3.9958 1.3643 21 6 11.0003 4.7337 -0.1092 22 7 11.9538 4.9844 0.7611 23 14 11.2715 5.0948 -1.9217 24 1 10.8374 6.4833 -2.2201 25 1 12.7131 4.9464 -2.2459 26 1 10.4795 4.1419 -2.7403 27 6 4.5992 2.3150 0.0114 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.6635 2.1337 -0.0004 32 1 4.1146 -2.1401 -0.0061 33 1 1.2623 -2.8163 1.0173 34 1 0.4943 -2.3680 -0.5246 35 1 2.0349 -3.2595 -0.5237 36 1 7.3297 3.9262 2.0249 37 1 6.9805 5.2079 0.8402 38 1 5.8173 3.8834 1.0870 39 1 7.9505 5.9329 -0.6549 40 1 9.1761 5.6242 -1.9079 41 1 7.5197 5.0044 -2.1111 42 1 12.7981 5.3565 0.4617 43 1 4.3395 3.0712 0.7522 44 1 4.7000 2.7605 -0.9783 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080027945.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:51 Heat of formation + Delta-G solvation = -31.990946 kcal Electronic energy + Delta-G solvation = -24830.527598 eV Core-core repulsion = 21327.758266 eV Total energy + Delta-G solvation = -3502.769333 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.42112 -39.25527 -37.98445 -35.58948 -33.54841 -32.86971 -32.13957 -31.33812 -29.99762 -27.18170 -26.85038 -26.34901 -25.15366 -23.53414 -22.18905 -21.46205 -20.46941 -18.65247 -17.46112 -16.98984 -16.87708 -16.28703 -15.79897 -15.40871 -14.87531 -14.58106 -14.45759 -14.13126 -13.97993 -13.49944 -13.29030 -13.05412 -13.03034 -12.92585 -12.61169 -12.53675 -12.35705 -12.31128 -12.27636 -11.94242 -11.75655 -11.56916 -11.44399 -11.19362 -10.94411 -10.72809 -10.66839 -10.18041 -9.68914 -9.40959 -9.12707 -8.86469 -8.67291 -8.02859 -7.84815 -6.18129 -4.19402 1.12278 1.25178 2.81052 3.10555 3.20669 3.35155 3.37580 3.46437 3.81777 4.29879 4.32105 4.42470 4.66516 4.71272 4.83121 4.87982 4.99789 5.03782 5.14321 5.21295 5.27373 5.32814 5.38918 5.42838 5.52202 5.60267 5.64117 5.67273 5.77795 5.89112 6.01117 6.12376 6.13736 6.19246 6.26320 6.30851 6.39441 6.42579 6.55301 6.77831 7.00536 7.14539 7.24924 7.56460 8.04322 8.39709 8.71780 8.83391 9.42212 10.94516 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.034737 B = 0.003102 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.859348 B = 9022.815079 C = 9243.736889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.122 4.122 3 C -0.064 4.064 4 C -0.175 4.175 5 C 0.112 3.888 6 C -0.137 4.137 7 C -0.053 4.053 8 C -0.114 4.114 9 O -0.273 6.273 10 C 0.066 3.934 11 H 0.110 0.890 12 C 0.511 3.489 13 O -0.528 6.528 14 N -0.580 5.580 15 C 0.075 3.925 16 C 0.231 3.769 17 H 0.064 0.936 18 C -0.162 4.162 19 C -0.529 4.529 20 H 0.079 0.921 21 C 0.076 3.924 22 N -0.894 5.894 23 Si 0.883 3.117 24 H -0.276 1.276 25 H -0.293 1.293 26 H -0.263 1.263 27 C -0.097 4.097 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.034 0.966 42 H 0.266 0.734 43 H 0.103 0.897 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.935 -7.051 0.700 24.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.176 4.176 5 C 0.066 3.934 6 C -0.155 4.155 7 C -0.053 4.053 8 C -0.171 4.171 9 O -0.186 6.186 10 C 0.007 3.993 11 H 0.127 0.873 12 C 0.296 3.704 13 O -0.405 6.405 14 N -0.313 5.313 15 C -0.068 4.068 16 C 0.130 3.870 17 H 0.081 0.919 18 C -0.220 4.220 19 C -0.568 4.568 20 H 0.098 0.902 21 C -0.127 4.127 22 N -0.531 5.531 23 Si 0.712 3.288 24 H -0.203 1.203 25 H -0.220 1.220 26 H -0.188 1.188 27 C -0.134 4.134 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.076 0.924 43 H 0.121 0.879 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -23.232 -7.458 0.207 24.401 hybrid contribution 0.455 0.604 -0.712 1.039 sum -22.777 -6.853 -0.505 23.791 Atomic orbital electron populations 1.20711 0.90938 1.02635 1.02100 1.19568 0.95947 0.92112 1.04639 1.20105 0.91507 0.97866 0.98701 1.20713 0.94588 0.94367 1.07967 1.19624 0.83380 0.94560 0.95874 1.20066 0.92726 0.95711 1.07039 1.19407 0.92217 0.95210 0.98471 1.20822 0.99974 0.93784 1.02488 1.86965 1.19281 1.30381 1.81948 1.23271 0.95175 0.81002 0.99894 0.87274 1.19796 0.84501 0.82236 0.83860 1.90701 1.58529 1.58829 1.32396 1.47769 1.31007 1.14976 1.37525 1.21844 0.95458 0.97845 0.91693 1.19337 0.82822 0.91586 0.93296 0.91873 1.22471 0.99814 1.00121 0.99583 1.21133 0.97061 1.43250 0.95316 0.90247 1.24857 0.95570 0.94721 0.97518 1.69868 1.05421 1.43671 1.34125 0.86925 0.76858 0.78923 0.86070 1.20330 1.22049 1.18772 1.21789 0.90489 0.96923 1.04186 0.91451 0.91442 0.91713 0.85752 0.85353 0.90929 0.91088 0.91335 0.92385 0.90263 0.92361 0.92391 0.92973 0.94722 0.92361 0.87919 0.88610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 9.19 36.01 0.33 -0.39 16 2 C -0.12 -1.21 5.89 -104.56 -0.62 -1.83 16 3 C -0.06 -0.68 9.70 -39.72 -0.39 -1.07 16 4 C -0.18 -2.28 6.27 -104.10 -0.65 -2.93 16 5 C 0.11 1.66 7.04 -38.95 -0.27 1.39 16 6 C -0.14 -1.73 9.71 -39.30 -0.38 -2.11 16 7 C -0.05 -0.55 5.87 -104.72 -0.61 -1.16 16 8 C -0.11 -0.82 9.18 36.00 0.33 -0.49 16 9 O -0.27 -4.89 10.39 -39.19 -0.41 -5.30 16 10 C 0.07 1.06 3.09 -26.99 -0.08 0.98 16 11 H 0.11 1.51 7.95 -51.93 -0.41 1.10 16 12 C 0.51 10.50 7.02 -10.99 -0.08 10.43 16 13 O -0.53 -13.25 15.90 -13.49 -0.21 -13.46 16 14 N -0.58 -11.71 2.75 -175.27 -0.48 -12.19 16 15 C 0.07 1.15 9.34 59.85 0.56 1.70 16 16 C 0.23 5.52 2.23 -69.08 -0.15 5.37 16 17 H 0.06 1.70 5.96 -51.93 -0.31 1.39 16 18 C -0.16 -3.40 8.65 37.16 0.32 -3.08 16 19 C -0.53 -14.52 8.95 -34.44 -0.31 -14.83 16 20 H 0.08 2.33 7.89 -52.48 -0.41 1.92 16 21 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 22 N -0.89 -26.77 13.96 55.43 0.77 -26.00 16 23 Si 0.88 21.74 24.37 -169.99 -4.14 17.60 16 24 H -0.28 -6.47 6.87 56.52 0.39 -6.08 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 27 C -0.10 -1.22 5.60 -26.52 -0.15 -1.37 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.38 6.71 -51.93 -0.35 0.03 16 30 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 31 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.42 6.70 -51.93 -0.35 0.07 16 35 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.08 1.19 6.43 -51.93 -0.33 0.85 16 38 H 0.06 0.66 4.39 -51.93 -0.23 0.43 16 39 H 0.06 1.11 6.66 -51.93 -0.35 0.76 16 40 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.10 0.98 6.56 -51.93 -0.34 0.64 16 44 H 0.10 1.27 7.92 -51.93 -0.41 0.86 16 LS Contribution 344.66 15.07 5.19 5.19 Total: -1.00 -34.15 344.66 -7.75 -41.90 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -6.22 Total: -0.42 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -2.25 Total: -7.33 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.29 Total: -38.19 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.62 Total: -18.76 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.14 Total: 17.60 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.15 -7.75 -41.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080027945.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.909 kcal (2) G-P(sol) polarization free energy of solvation -34.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds