Wall clock time and date at job start Tue Mar 31 2020 08:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38396 * 120.11540 * 2 1 4 4 C 1.37693 * 119.97835 * 180.02562 * 3 2 1 5 5 C 1.38924 * 120.78844 * 0.34314 * 4 3 2 6 6 C 1.39251 * 118.87599 * 359.50028 * 5 4 3 7 7 C 1.37975 * 120.23737 * 0.32385 * 6 5 4 8 8 C 1.50695 * 119.82665 * 180.02562 * 7 6 5 9 9 O 1.36574 * 111.28973 * 178.91987 * 5 4 3 10 10 C 1.43775 * 108.99173 * 19.03117 * 9 5 4 11 11 H 1.08996 * 110.74794 * 213.81716 * 10 9 5 12 12 C 1.50696 * 110.74806 * 90.64629 * 10 9 5 13 13 O 1.21280 * 120.00049 * 358.91360 * 12 10 9 14 14 N 1.34782 * 119.99995 * 178.91893 * 12 10 9 15 15 C 1.46500 * 119.99756 * 359.97438 * 14 12 10 16 16 C 1.46498 * 119.99841 * 180.02562 * 14 12 10 17 17 H 1.09001 * 109.47359 * 359.97438 * 16 14 12 18 18 C 1.53002 * 109.46954 * 239.99814 * 16 14 12 19 19 C 1.50698 * 109.46877 * 120.00003 * 16 14 12 20 20 H 1.07994 * 120.00382 * 5.61976 * 19 16 14 21 21 C 1.37880 * 119.99729 * 185.62308 * 19 16 14 22 22 N 1.31519 * 119.99561 * 197.56429 * 21 19 16 23 23 Si 1.86797 * 120.00255 * 17.28352 * 21 19 16 24 24 H 1.48497 * 109.47357 * 180.27731 * 23 21 19 25 25 H 1.48501 * 109.47332 * 300.27919 * 23 21 19 26 26 H 1.48499 * 109.46999 * 60.27726 * 23 21 19 27 27 C 1.51642 * 132.17850 * 180.36427 * 4 3 2 28 28 H 1.09007 * 109.46946 * 90.00164 * 1 2 3 29 29 H 1.08998 * 109.47061 * 209.99126 * 1 2 3 30 30 H 1.08993 * 109.47492 * 329.99972 * 1 2 3 31 31 H 1.07997 * 120.00757 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.87943 * 180.32604 * 6 5 4 33 33 H 1.08996 * 109.47193 * 269.98718 * 8 7 6 34 34 H 1.09011 * 109.46658 * 29.98331 * 8 7 6 35 35 H 1.09000 * 109.47417 * 149.97518 * 8 7 6 36 36 H 1.08999 * 109.46853 * 270.00128 * 15 14 12 37 37 H 1.09000 * 109.47273 * 29.99732 * 15 14 12 38 38 H 1.08998 * 109.47119 * 150.00581 * 15 14 12 39 39 H 1.08997 * 109.46990 * 185.92816 * 18 16 14 40 40 H 1.08997 * 109.46874 * 305.92434 * 18 16 14 41 41 H 1.08994 * 109.47256 * 65.92712 * 18 16 14 42 42 H 0.96994 * 120.00058 * 354.49249 * 22 21 19 43 43 H 1.08996 * 110.93998 * 46.43548 * 27 4 3 44 44 H 1.09004 * 110.97040 * 282.76727 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.1971 0.0000 4 6 3.5783 1.1939 -0.0005 5 6 4.2865 -0.0013 -0.0082 6 6 3.5804 -1.2014 -0.0048 7 6 2.2007 -1.1958 -0.0006 8 6 1.4458 -2.5001 0.0036 9 8 5.6339 0.2209 -0.0313 10 6 5.8937 1.5666 0.4032 11 1 6.7554 1.9816 -0.1197 12 6 6.1027 1.6150 1.8948 13 8 6.0194 0.5992 2.5521 14 7 6.3819 2.7873 2.4984 15 6 6.4829 4.0143 1.7044 16 6 6.5856 2.8343 3.9484 17 1 6.4723 1.8330 4.3639 18 6 5.5501 3.7677 4.5789 19 6 7.9710 3.3478 4.2447 20 1 8.6006 3.6980 3.4402 21 6 8.4349 3.3704 5.5429 22 7 9.4719 4.1155 5.8577 23 14 7.5856 2.3489 6.8561 24 1 8.2678 2.5520 8.1594 25 1 6.1660 2.7698 6.9696 26 1 7.6478 0.9128 6.4833 27 6 4.5992 2.3151 0.0065 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3634 0.8899 0.5138 31 1 1.6634 2.1336 0.0004 32 1 4.1147 -2.1400 -0.0053 33 1 1.2606 -2.8160 -1.0229 34 1 2.0359 -3.2596 0.5167 35 1 0.4953 -2.3681 0.5205 36 1 7.5124 4.1487 1.3726 37 1 5.8282 3.9401 0.8360 38 1 6.1832 4.8670 2.3136 39 1 5.7659 3.8855 5.6408 40 1 5.5923 4.7406 4.0894 41 1 4.5543 3.3419 4.4556 42 1 9.9594 4.5863 5.1638 43 1 4.3429 3.0706 0.7492 44 1 4.6951 2.7616 -0.9833 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080027949.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:54 Heat of formation + Delta-G solvation = -37.936050 kcal Electronic energy + Delta-G solvation = -25320.494640 eV Core-core repulsion = 21817.467508 eV Total energy + Delta-G solvation = -3503.027132 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.43200 -39.12621 -37.85034 -35.52738 -33.51962 -32.85772 -32.06131 -31.25095 -29.78856 -27.08312 -26.75292 -26.33409 -24.78739 -23.49605 -22.15500 -21.29816 -20.32494 -18.68134 -17.58192 -17.26635 -16.75342 -16.49606 -15.56972 -15.21598 -14.96577 -14.52201 -14.17883 -13.98649 -13.83837 -13.50276 -13.25506 -12.94875 -12.91298 -12.78744 -12.72928 -12.60904 -12.22069 -12.17962 -11.98674 -11.71372 -11.61581 -11.45355 -11.35354 -11.29140 -11.03428 -10.73491 -10.49764 -9.99790 -9.77743 -9.20472 -9.07390 -8.75312 -8.35882 -7.92446 -7.83839 -6.52138 -4.16760 1.23185 1.35573 2.95589 3.21860 3.36256 3.47646 3.59303 3.65492 3.73436 4.31273 4.43361 4.45841 4.73507 4.76667 4.81647 4.98563 5.05493 5.13486 5.19523 5.29657 5.35861 5.40480 5.48400 5.50438 5.53504 5.61774 5.69465 5.70574 5.84653 5.87151 6.08469 6.11439 6.23472 6.32252 6.37433 6.40490 6.51224 6.55285 6.63487 6.91222 7.07058 7.19266 7.36436 7.79062 8.19827 8.30021 8.68249 8.87098 9.51515 10.85770 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.021151 B = 0.003886 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.524865 B = 7203.476472 C = 7498.498599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.121 4.121 3 C -0.065 4.065 4 C -0.174 4.174 5 C 0.117 3.883 6 C -0.131 4.131 7 C -0.055 4.055 8 C -0.115 4.115 9 O -0.276 6.276 10 C 0.064 3.936 11 H 0.136 0.864 12 C 0.490 3.510 13 O -0.533 6.533 14 N -0.582 5.582 15 C 0.075 3.925 16 C 0.235 3.765 17 H 0.054 0.946 18 C -0.161 4.161 19 C -0.611 4.611 20 H 0.061 0.939 21 C 0.037 3.963 22 N -0.900 5.900 23 Si 1.039 2.961 24 H -0.283 1.283 25 H -0.273 1.273 26 H -0.279 1.279 27 C -0.100 4.100 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.048 0.952 41 H 0.026 0.974 42 H 0.268 0.732 43 H 0.101 0.899 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.885 -4.552 -14.899 22.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.121 4.121 3 C -0.083 4.083 4 C -0.175 4.175 5 C 0.071 3.929 6 C -0.150 4.150 7 C -0.055 4.055 8 C -0.171 4.171 9 O -0.189 6.189 10 C 0.004 3.996 11 H 0.154 0.846 12 C 0.275 3.725 13 O -0.410 6.410 14 N -0.314 5.314 15 C -0.068 4.068 16 C 0.133 3.867 17 H 0.072 0.928 18 C -0.219 4.219 19 C -0.649 4.649 20 H 0.079 0.921 21 C -0.169 4.169 22 N -0.534 5.534 23 Si 0.867 3.133 24 H -0.209 1.209 25 H -0.199 1.199 26 H -0.205 1.205 27 C -0.138 4.138 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.045 0.955 42 H 0.078 0.922 43 H 0.119 0.881 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.713 -5.559 -12.961 21.868 hybrid contribution 0.373 0.744 -1.676 1.871 sum -16.340 -4.815 -14.636 22.459 Atomic orbital electron populations 1.20743 0.90983 1.02740 1.01992 1.19548 0.95932 0.92131 1.04538 1.20072 0.91516 0.97818 0.98900 1.20660 0.94632 0.94325 1.07853 1.19606 0.83191 0.94472 0.95588 1.20068 0.92736 0.95803 1.06366 1.19392 0.92253 0.95211 0.98624 1.20852 1.00078 0.93835 1.02373 1.87034 1.20061 1.31440 1.80331 1.23362 1.00203 0.81486 0.94512 0.84643 1.20568 0.78436 0.84414 0.89108 1.90682 1.51358 1.33441 1.65492 1.47925 1.67478 1.06174 1.09835 1.21822 1.01190 0.88535 0.95285 1.19218 0.95591 0.96944 0.74945 0.92792 1.22517 0.97313 1.00084 1.01990 1.22153 0.99158 1.47773 0.95836 0.92092 1.25673 0.97238 0.95394 0.98605 1.70880 1.20922 1.25678 1.35897 0.84133 0.76034 0.76994 0.76164 1.20862 1.19933 1.20456 1.21866 0.91001 0.97179 1.03707 0.91491 0.91265 0.91783 0.85863 0.85464 0.91008 0.91374 0.90924 0.92795 0.92174 0.90436 0.91463 0.93305 0.95517 0.92211 0.88076 0.88184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 9.61 36.00 0.35 -0.54 16 2 C -0.12 -1.41 5.89 -104.56 -0.62 -2.03 16 3 C -0.06 -0.81 9.70 -39.72 -0.39 -1.19 16 4 C -0.17 -2.50 6.26 -104.10 -0.65 -3.16 16 5 C 0.12 1.91 6.87 -38.95 -0.27 1.64 16 6 C -0.13 -1.90 9.71 -39.30 -0.38 -2.29 16 7 C -0.05 -0.67 5.87 -104.72 -0.61 -1.28 16 8 C -0.12 -1.00 9.59 36.00 0.35 -0.66 16 9 O -0.28 -4.92 10.45 -40.66 -0.43 -5.34 16 10 C 0.06 1.03 3.20 -26.99 -0.09 0.94 16 11 H 0.14 1.78 8.02 -51.93 -0.42 1.36 16 12 C 0.49 10.26 6.96 -10.98 -0.08 10.18 16 13 O -0.53 -13.55 15.82 -13.51 -0.21 -13.77 16 14 N -0.58 -12.06 2.75 -175.26 -0.48 -12.54 16 15 C 0.08 1.19 9.05 59.85 0.54 1.73 16 16 C 0.23 5.73 2.22 -69.08 -0.15 5.57 16 17 H 0.05 1.47 5.56 -51.93 -0.29 1.18 16 18 C -0.16 -3.49 8.95 37.16 0.33 -3.15 16 19 C -0.61 -16.88 8.68 -34.44 -0.30 -17.18 16 20 H 0.06 1.78 7.74 -52.49 -0.41 1.38 16 21 C 0.04 1.06 5.30 -17.82 -0.09 0.96 16 22 N -0.90 -27.16 13.70 55.43 0.76 -26.40 16 23 Si 1.04 25.61 26.29 -169.99 -4.47 21.14 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.27 -6.17 5.73 56.52 0.32 -5.84 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 C -0.10 -1.27 5.33 -26.52 -0.14 -1.41 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.50 5.94 -51.93 -0.31 0.19 16 30 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.57 8.08 -51.92 -0.42 0.16 16 35 H 0.07 0.54 5.94 -51.93 -0.31 0.23 16 36 H 0.05 0.86 8.09 -51.93 -0.42 0.44 16 37 H 0.06 0.71 4.47 -51.93 -0.23 0.47 16 38 H 0.08 1.23 6.33 -51.93 -0.33 0.90 16 39 H 0.07 1.52 4.85 -51.93 -0.25 1.27 16 40 H 0.05 0.97 6.45 -51.93 -0.33 0.64 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.27 8.00 8.73 -40.82 -0.36 7.64 16 43 H 0.10 1.24 6.30 -51.93 -0.33 0.92 16 44 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 345.42 15.07 5.21 5.21 Total: -1.00 -34.66 345.42 -8.06 -42.72 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -6.23 Total: 0.84 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -2.20 Total: -11.86 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.28 Total: -38.94 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.64 Total: -19.11 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -4.47 Total: 21.14 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.66 -8.06 -42.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080027949.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.783 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds