Wall clock time and date at job start Tue Mar 31 2020 08:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38395 * 120.11647 * 2 1 4 4 C 1.37700 * 119.97786 * 179.97438 * 3 2 1 5 5 C 1.38928 * 120.78434 * 359.62248 * 4 3 2 6 6 C 1.39243 * 118.87581 * 0.61806 * 5 4 3 7 7 C 1.37976 * 120.24188 * 359.54754 * 6 5 4 8 8 C 1.50700 * 119.82490 * 180.02562 * 7 6 5 9 9 O 1.36131 * 111.22261 * 180.66280 * 5 4 3 10 10 C 1.43767 * 109.24150 * 340.94102 * 9 5 4 11 11 H 1.09006 * 110.74756 * 146.27215 * 10 9 5 12 12 C 1.50696 * 110.75139 * 269.44295 * 10 9 5 13 13 O 1.21287 * 119.99868 * 3.54563 * 12 10 9 14 14 N 1.34771 * 120.00122 * 183.54555 * 12 10 9 15 15 C 1.46505 * 120.00035 * 359.97438 * 14 12 10 16 16 C 1.46506 * 120.00092 * 179.97438 * 14 12 10 17 17 H 1.08996 * 109.46660 * 0.02562 * 16 14 12 18 18 C 1.52997 * 109.47289 * 239.99940 * 16 14 12 19 19 C 1.50708 * 109.46796 * 120.00014 * 16 14 12 20 20 H 1.07995 * 119.99755 * 0.02562 * 19 16 14 21 21 C 1.37873 * 119.99729 * 180.02562 * 19 16 14 22 22 N 1.31516 * 119.99909 * 0.02562 * 21 19 16 23 23 Si 1.86803 * 119.99980 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.46921 * 60.00420 * 23 21 19 25 25 H 1.48496 * 109.46933 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46946 * 300.00103 * 23 21 19 27 27 C 1.51636 * 132.17830 * 179.04522 * 4 3 2 28 28 H 1.08997 * 109.47632 * 270.01986 * 1 2 3 29 29 H 1.09004 * 109.47424 * 30.02673 * 1 2 3 30 30 H 1.09000 * 109.47221 * 150.01696 * 1 2 3 31 31 H 1.08003 * 120.00936 * 359.97438 * 3 2 1 32 32 H 1.08004 * 119.87845 * 179.57962 * 6 5 4 33 33 H 1.08995 * 109.47081 * 90.00230 * 8 7 6 34 34 H 1.09002 * 109.46720 * 210.00497 * 8 7 6 35 35 H 1.08997 * 109.46712 * 330.00019 * 8 7 6 36 36 H 1.08999 * 109.46723 * 270.00200 * 15 14 12 37 37 H 1.08997 * 109.46979 * 29.99903 * 15 14 12 38 38 H 1.09005 * 109.46961 * 150.00254 * 15 14 12 39 39 H 1.09002 * 109.47153 * 179.97438 * 18 16 14 40 40 H 1.09001 * 109.46832 * 60.00146 * 18 16 14 41 41 H 1.09004 * 109.47261 * 300.00128 * 18 16 14 42 42 H 0.97002 * 119.99804 * 180.02562 * 22 21 19 43 43 H 1.09001 * 110.94341 * 77.72095 * 27 4 3 44 44 H 1.09001 * 110.94218 * 314.03476 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.1971 0.0000 4 6 3.5784 1.1938 0.0005 5 6 4.2865 -0.0014 0.0089 6 6 3.5803 -1.2015 0.0037 7 6 2.2006 -1.1958 -0.0002 8 6 1.4457 -2.5002 -0.0053 9 8 5.6294 0.2215 0.0226 10 6 5.8913 1.5643 -0.4192 11 1 6.7577 1.9785 0.0966 12 6 6.0910 1.6058 -1.9123 13 8 5.9562 0.5960 -2.5704 14 7 6.4195 2.7649 -2.5163 15 6 6.5819 3.9848 -1.7214 16 6 6.6143 2.8051 -3.9678 17 1 6.4518 1.8108 -4.3837 18 6 8.0412 3.2616 -4.2784 19 6 5.6332 3.7717 -4.5796 20 1 4.9349 4.3032 -3.9502 21 6 5.6273 3.9774 -5.9429 22 7 6.4774 3.3298 -6.7094 23 14 4.4107 5.1750 -6.7015 24 1 4.6314 6.5299 -6.1352 25 1 4.6074 5.2149 -8.1728 26 1 3.0260 4.7317 -6.3995 27 6 4.5992 2.3149 -0.0180 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8898 -0.5143 30 1 -0.3634 -0.8901 -0.5136 31 1 1.6634 2.1336 -0.0004 32 1 4.1145 -2.1401 0.0032 33 1 1.2608 -2.8169 1.0211 34 1 0.4950 -2.3676 -0.5216 35 1 2.0355 -3.2592 -0.5191 36 1 5.6255 4.5031 -1.6520 37 1 6.9268 3.7234 -0.7210 38 1 7.3140 4.6355 -2.1998 39 1 8.1862 3.2910 -5.3584 40 1 8.7508 2.5625 -3.8359 41 1 8.2033 4.2560 -3.8624 42 1 6.4735 3.4749 -7.6685 43 1 4.7011 2.7655 0.9692 44 1 4.3386 3.0669 -0.7628 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080027952.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:58 Heat of formation + Delta-G solvation = -41.531731 kcal Electronic energy + Delta-G solvation = -25328.295918 eV Core-core repulsion = 21825.112866 eV Total energy + Delta-G solvation = -3503.183052 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.31428 -38.96024 -37.72431 -35.33349 -33.37913 -32.83503 -31.93404 -30.97301 -29.22279 -26.94207 -26.59218 -26.16103 -25.23047 -23.43663 -22.03253 -21.20257 -20.28288 -18.67901 -17.25032 -16.76600 -16.46600 -16.20170 -15.38984 -15.06153 -14.88148 -14.44913 -14.31293 -13.96031 -13.67551 -13.52212 -13.08841 -12.81671 -12.70621 -12.63706 -12.53557 -12.39143 -12.11549 -12.00177 -11.70432 -11.56998 -11.33309 -11.28712 -11.08355 -10.91661 -10.84285 -10.73292 -10.62139 -10.28476 -10.18759 -9.21673 -8.98446 -8.61798 -8.44843 -7.77637 -7.66243 -6.08917 -4.17303 1.36788 1.48874 3.09801 3.26275 3.29159 3.31853 3.36498 3.79981 3.88992 4.37159 4.46921 4.60778 4.85735 4.92403 4.95403 5.08267 5.15918 5.22376 5.25550 5.37548 5.46512 5.56685 5.62241 5.63255 5.63812 5.73376 5.81285 5.83787 5.96535 5.98937 6.21280 6.23536 6.36761 6.53351 6.64307 6.72635 6.76202 6.78964 7.01777 7.29836 7.38870 7.47588 7.68139 7.98453 8.15866 8.44393 8.78945 8.96359 9.49036 10.96434 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015499 B = 0.004342 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.144629 B = 6447.324496 C = 7259.566868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.121 4.121 3 C -0.064 4.064 4 C -0.172 4.172 5 C 0.118 3.882 6 C -0.132 4.132 7 C -0.056 4.056 8 C -0.114 4.114 9 O -0.279 6.279 10 C 0.063 3.937 11 H 0.134 0.866 12 C 0.488 3.512 13 O -0.532 6.532 14 N -0.588 5.588 15 C 0.082 3.918 16 C 0.258 3.742 17 H 0.063 0.937 18 C -0.147 4.147 19 C -0.526 4.526 20 H 0.058 0.942 21 C 0.065 3.935 22 N -0.887 5.887 23 Si 0.899 3.101 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.277 1.277 27 C -0.098 4.098 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.012 0.988 41 H 0.031 0.969 42 H 0.264 0.736 43 H 0.097 0.903 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.076 -2.958 16.213 17.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.121 4.121 3 C -0.082 4.082 4 C -0.173 4.173 5 C 0.073 3.927 6 C -0.151 4.151 7 C -0.056 4.056 8 C -0.171 4.171 9 O -0.192 6.192 10 C 0.003 3.997 11 H 0.151 0.849 12 C 0.273 3.727 13 O -0.409 6.409 14 N -0.321 5.321 15 C -0.062 4.062 16 C 0.159 3.841 17 H 0.081 0.919 18 C -0.206 4.206 19 C -0.565 4.565 20 H 0.076 0.924 21 C -0.137 4.137 22 N -0.525 5.525 23 Si 0.726 3.274 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.203 1.203 27 C -0.135 4.135 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.031 0.969 41 H 0.050 0.950 42 H 0.074 0.926 43 H 0.115 0.885 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.890 -3.660 15.691 17.524 hybrid contribution -0.458 1.048 -0.549 1.269 sum -7.348 -2.612 15.142 17.032 Atomic orbital electron populations 1.20740 0.91061 1.02770 1.01871 1.19531 0.95891 0.92143 1.04581 1.20084 0.91609 0.97816 0.98699 1.20673 0.94667 0.94360 1.07584 1.19476 0.83148 0.94462 0.95622 1.20031 0.92721 0.95696 1.06627 1.19370 0.92269 0.95153 0.98779 1.20841 1.00096 0.93874 1.02247 1.86870 1.20238 1.31885 1.80167 1.23413 1.00157 0.81396 0.94723 0.84854 1.20532 0.78688 0.84524 0.88942 1.90692 1.50968 1.33692 1.65506 1.48227 1.66554 1.06825 1.10450 1.21671 1.01794 0.88550 0.94160 1.18969 0.93208 0.99273 0.72685 0.91925 1.22099 0.96462 0.97521 1.04481 1.21247 1.17999 1.24921 0.92303 0.92357 1.24887 0.95794 0.96089 0.96949 1.69869 1.35982 1.41557 1.05130 0.86552 0.81540 0.81179 0.78101 1.20200 1.21129 1.20265 1.21757 0.90954 0.97287 1.03515 0.91577 0.91762 0.91302 0.85890 0.85582 0.91109 0.90953 0.91429 0.92975 0.93017 0.90454 0.88712 0.96911 0.95010 0.92592 0.88457 0.88112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.61 36.00 0.35 -0.70 16 2 C -0.12 -1.59 5.89 -104.56 -0.62 -2.21 16 3 C -0.06 -0.91 9.70 -39.72 -0.39 -1.29 16 4 C -0.17 -2.74 6.26 -104.10 -0.65 -3.39 16 5 C 0.12 2.06 6.83 -38.95 -0.27 1.80 16 6 C -0.13 -2.06 9.71 -39.30 -0.38 -2.44 16 7 C -0.06 -0.75 5.87 -104.72 -0.61 -1.36 16 8 C -0.11 -1.12 9.59 36.01 0.35 -0.77 16 9 O -0.28 -5.09 10.43 -39.20 -0.41 -5.50 16 10 C 0.06 1.03 3.14 -26.98 -0.08 0.95 16 11 H 0.13 1.69 7.08 -51.93 -0.37 1.32 16 12 C 0.49 10.50 6.93 -10.99 -0.08 10.42 16 13 O -0.53 -14.02 15.78 -13.49 -0.21 -14.23 16 14 N -0.59 -12.43 2.75 -175.25 -0.48 -12.92 16 15 C 0.08 1.30 8.52 59.85 0.51 1.81 16 16 C 0.26 6.62 2.64 -69.08 -0.18 6.44 16 17 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 18 C -0.15 -3.50 8.95 37.16 0.33 -3.17 16 19 C -0.53 -14.16 8.37 -34.44 -0.29 -14.45 16 20 H 0.06 1.53 7.65 -52.49 -0.40 1.13 16 21 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 22 N -0.89 -25.16 11.32 55.43 0.63 -24.53 16 23 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 C -0.10 -1.37 6.09 -26.52 -0.16 -1.53 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 30 H 0.07 0.60 5.94 -51.93 -0.31 0.29 16 31 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 32 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.62 5.94 -51.93 -0.31 0.32 16 35 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 36 H 0.05 0.78 7.44 -51.93 -0.39 0.40 16 37 H 0.05 0.61 6.24 -51.93 -0.32 0.29 16 38 H 0.08 1.24 6.43 -51.93 -0.33 0.91 16 39 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 40 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.03 0.68 6.66 -51.93 -0.35 0.34 16 42 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.10 1.46 6.56 -51.93 -0.34 1.12 16 LS Contribution 350.61 15.07 5.28 5.28 Total: -1.00 -33.43 350.61 -8.78 -42.21 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.30 Total: 1.91 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -2.27 Total: -8.21 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.15 Total: -37.44 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.62 Total: -19.73 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.43 -8.78 -42.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080027952.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.681 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds