Wall clock time and date at job start Tue Mar 31 2020 08:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86803 * 119.99695 * 2 1 4 4 H 1.48505 * 109.46847 * 239.99998 * 3 2 1 5 5 H 1.48499 * 109.47175 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47166 * 120.00404 * 3 2 1 7 7 C 1.38651 * 120.00361 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00107 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99658 * 0.02562 * 7 2 1 10 10 C 1.35757 * 116.99699 * 185.05872 * 9 7 2 11 11 C 1.38898 * 120.07058 * 354.45991 * 10 9 7 12 12 C 1.38076 * 119.93389 * 180.02562 * 11 10 9 13 13 C 1.38325 * 120.06420 * 0.02562 * 12 11 10 14 14 C 1.38276 * 120.14356 * 359.97438 * 13 12 11 15 15 C 1.50693 * 119.97014 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47346 * 90.00154 * 15 14 13 17 17 O 1.21282 * 119.99890 * 0.27516 * 16 15 14 18 18 N 1.34773 * 120.00398 * 180.02562 * 16 15 14 19 19 C 1.44578 * 118.64135 * 359.72887 * 18 16 15 20 20 C 1.54314 * 109.91020 * 270.85686 * 19 18 16 21 21 C 1.47088 * 110.29489 * 288.76003 * 20 19 18 22 22 C 1.52568 * 114.32853 * 62.73226 * 21 20 19 23 23 C 1.50883 * 109.35260 * 274.97669 * 22 21 20 24 24 C 1.47604 * 118.64659 * 179.97438 * 18 16 15 25 25 C 1.38121 * 120.06589 * 0.27535 * 14 13 12 26 26 H 0.97005 * 120.00450 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.03306 * 0.02562 * 11 10 9 28 28 H 1.07999 * 119.97048 * 179.97438 * 12 11 10 29 29 H 1.08001 * 119.92713 * 180.02562 * 13 12 11 30 30 H 1.09001 * 109.47043 * 329.99971 * 15 14 13 31 31 H 1.09002 * 109.47503 * 209.99906 * 15 14 13 32 32 H 1.09002 * 109.45282 * 30.76626 * 19 18 16 33 33 H 1.09005 * 109.45226 * 150.68920 * 19 18 16 34 34 H 1.09001 * 109.40166 * 168.46379 * 20 19 18 35 35 H 1.09004 * 109.28129 * 48.97488 * 20 19 18 36 36 H 1.08999 * 108.51493 * 301.47278 * 21 20 19 37 37 H 1.09005 * 108.39090 * 183.89548 * 21 20 19 38 38 H 1.09007 * 109.49187 * 155.01798 * 22 21 20 39 39 H 1.09000 * 109.49289 * 34.93972 * 22 21 20 40 40 H 1.09000 * 109.36891 * 331.70086 * 23 22 21 41 41 H 1.09002 * 109.37222 * 212.07562 * 23 22 21 42 42 H 1.08997 * 108.94822 * 258.54691 * 24 18 16 43 43 H 1.09000 * 108.94993 * 17.26516 * 24 18 16 44 44 H 1.07998 * 120.03541 * 179.70747 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 3.1032 1.6965 -1.2126 5 1 1.2844 2.7465 0.0006 6 1 3.1033 1.6965 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0016 10 6 2.0700 -3.5046 0.1046 11 6 3.4574 -3.4395 0.0922 12 6 4.2025 -4.5969 0.1998 13 6 3.5686 -5.8205 0.3194 14 6 2.1876 -5.8888 0.3321 15 6 1.5010 -7.2239 0.4632 16 6 1.2784 -7.5333 1.9211 17 8 1.6371 -6.7448 2.7700 18 7 0.6763 -8.6839 2.2816 19 6 0.2505 -9.5975 1.2451 20 6 -1.1879 -9.2563 0.8023 21 6 -2.1463 -9.6207 1.8568 22 6 -1.9612 -8.8582 3.1653 23 6 -0.9171 -9.5519 4.0049 24 6 0.4739 -8.9569 3.7180 25 6 1.4366 -4.7350 0.2196 26 1 -0.4851 0.8401 -0.0004 27 1 3.9528 -2.4844 -0.0016 28 1 5.2813 -4.5470 0.1898 29 1 4.1536 -6.7245 0.4039 30 1 2.1255 -7.9987 0.0185 31 1 0.5409 -7.1909 -0.0519 32 1 0.9189 -9.5116 0.3884 33 1 0.2793 -10.6182 1.6266 34 1 -1.4265 -9.8062 -0.1080 35 1 -1.2592 -8.1869 0.6038 36 1 -2.0478 -10.6869 2.0607 37 1 -3.1538 -9.4321 1.4860 38 1 -2.9062 -8.8325 3.7081 39 1 -1.6372 -7.8399 2.9501 40 1 -0.9107 -10.6158 3.7676 41 1 -1.1558 -9.4203 5.0603 42 1 1.2361 -9.6591 4.0556 43 1 0.5804 -8.0253 4.2738 44 1 0.3580 -4.7894 0.2249 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089585407.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:03 Heat of formation + Delta-G solvation = -45.901656 kcal Electronic energy + Delta-G solvation = -24703.327037 eV Core-core repulsion = 21199.954491 eV Total energy + Delta-G solvation = -3503.372546 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.44415 -38.90815 -37.64903 -36.34481 -33.96580 -33.13784 -32.25499 -31.67674 -29.14598 -27.60893 -26.54539 -25.44858 -25.08041 -22.27808 -21.50539 -20.80196 -20.50585 -18.85130 -17.58407 -17.14929 -16.90210 -16.27096 -15.81310 -15.07591 -14.79220 -14.62281 -14.35135 -14.24550 -14.13676 -13.64295 -13.52719 -13.40070 -13.12351 -12.67336 -12.54878 -12.37206 -12.25903 -11.80561 -11.73421 -11.49903 -11.20360 -11.08529 -10.90963 -10.87065 -10.77081 -10.70641 -10.60184 -10.54187 -10.39307 -9.58457 -9.26606 -8.76511 -8.65362 -7.98219 -7.13915 -6.37243 -3.96272 2.17088 2.47104 2.80383 3.05619 3.17568 3.19967 3.21748 4.02874 4.36303 4.56866 4.58910 4.67188 4.75712 4.89230 4.91890 5.02913 5.13251 5.21465 5.24221 5.30521 5.39477 5.49370 5.51225 5.55188 5.65816 5.74633 5.77158 5.82753 5.90794 5.91046 5.94416 6.00771 6.05228 6.19271 6.25390 6.41504 6.57236 6.73691 6.99625 7.14459 7.34829 7.39312 7.44688 7.51690 7.90878 8.07805 8.35499 9.08488 9.79781 10.81076 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020323 B = 0.003241 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.438939 B = 8636.786814 C = 9271.841313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.180 6.180 10 C 0.155 3.845 11 C -0.231 4.231 12 C -0.075 4.075 13 C -0.197 4.197 14 C -0.032 4.032 15 C -0.093 4.093 16 C 0.511 3.489 17 O -0.519 6.519 18 N -0.613 5.613 19 C 0.111 3.889 20 C -0.143 4.143 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.129 4.129 24 C 0.111 3.889 25 C -0.175 4.175 26 H 0.269 0.731 27 H 0.126 0.874 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.089 0.911 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.158 -21.438 2.469 21.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.108 0.892 9 O -0.084 6.084 10 C 0.102 3.898 11 C -0.250 4.250 12 C -0.093 4.093 13 C -0.216 4.216 14 C -0.033 4.033 15 C -0.133 4.133 16 C 0.299 3.701 17 O -0.393 6.393 18 N -0.348 5.348 19 C -0.013 4.013 20 C -0.182 4.182 21 C -0.153 4.153 22 C -0.157 4.157 23 C -0.167 4.167 24 C -0.011 4.011 25 C -0.194 4.194 26 H 0.079 0.921 27 H 0.143 0.857 28 H 0.125 0.875 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.108 0.892 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.402 -20.801 2.924 21.052 hybrid contribution 0.422 0.722 0.008 0.836 sum -0.981 -20.079 2.932 20.316 Atomic orbital electron populations 1.70030 1.05928 1.27612 1.46479 1.25260 0.95823 0.98738 0.96676 0.85801 0.78693 0.79893 0.79145 1.19548 1.20325 1.19536 1.21268 0.91748 0.80895 1.52822 0.89200 1.83977 1.34221 1.11351 1.78853 1.19271 0.90255 0.87941 0.92358 1.21166 0.93834 0.98919 1.11114 1.20672 0.98338 0.92308 0.97977 1.20339 0.93303 0.96969 1.10973 1.18691 0.93235 0.92035 0.99327 1.20667 1.02415 0.96874 0.93295 1.20842 0.77160 0.80413 0.91646 1.90742 1.49175 1.46749 1.52618 1.47727 1.60127 1.20529 1.06421 1.21466 0.95359 0.93563 0.90931 1.21261 0.95356 1.02848 0.98714 1.20428 0.99415 0.99983 0.95485 1.21082 0.98543 1.00402 0.95687 1.21767 0.94512 0.99926 1.00514 1.21784 0.96137 1.01972 0.81185 1.19925 0.98995 0.89949 1.10530 0.92089 0.85651 0.87510 0.88015 0.88525 0.88352 0.90128 0.90634 0.90684 0.91265 0.92411 0.92420 0.91960 0.91293 0.91770 0.90836 0.92319 0.89224 0.86945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.07 13.67 55.48 0.76 -25.31 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 21.15 29.55 -169.99 -5.02 16.13 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.39 -11.35 9.49 30.88 0.29 -11.05 16 8 H 0.09 2.42 5.20 -52.49 -0.27 2.14 16 9 O -0.18 -5.37 9.76 0.01 0.00 -5.37 16 10 C 0.15 3.97 6.65 -39.11 -0.26 3.71 16 11 C -0.23 -5.34 9.17 -39.40 -0.36 -5.70 16 12 C -0.07 -1.48 10.04 -39.61 -0.40 -1.87 16 13 C -0.20 -3.67 9.70 -39.54 -0.38 -4.06 16 14 C -0.03 -0.61 4.37 -104.65 -0.46 -1.07 16 15 C -0.09 -1.30 4.32 -29.04 -0.13 -1.43 16 16 C 0.51 7.83 7.62 -10.99 -0.08 7.75 16 17 O -0.52 -10.51 15.31 5.56 0.09 -10.43 16 18 N -0.61 -6.98 2.25 -172.87 -0.39 -7.36 16 19 C 0.11 0.88 5.13 -4.38 -0.02 0.86 16 20 C -0.14 -1.12 5.61 -28.88 -0.16 -1.28 16 21 C -0.12 -0.89 5.15 -29.79 -0.15 -1.05 16 22 C -0.12 -1.09 5.51 -28.01 -0.15 -1.24 16 23 C -0.13 -1.05 5.71 -27.28 -0.16 -1.21 16 24 C 0.11 1.18 6.11 -2.92 -0.02 1.16 16 25 C -0.17 -3.94 9.64 -39.39 -0.38 -4.32 16 26 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 28 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.10 1.06 7.25 -51.93 -0.38 0.68 16 31 H 0.10 1.21 7.03 -51.93 -0.36 0.85 16 32 H 0.08 0.56 6.25 -51.93 -0.32 0.23 16 33 H 0.08 0.49 8.06 -51.93 -0.42 0.07 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.67 7.28 -51.93 -0.38 0.29 16 36 H 0.06 0.38 7.36 -51.93 -0.38 0.00 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 39 H 0.07 0.82 7.48 -51.93 -0.39 0.43 16 40 H 0.06 0.44 7.32 -51.93 -0.38 0.06 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 1.18 6.95 -51.93 -0.36 0.82 16 44 H 0.11 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 350.57 15.07 5.28 5.28 Total: -1.00 -34.62 350.57 -8.66 -43.28 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.46 Total: 3.57 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -2.92 Total: -19.79 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.37 Total: -32.68 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: 0.09 Total: -15.79 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.62 -8.66 -43.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089585407.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.618 kcal (2) G-P(sol) polarization free energy of solvation -34.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds