Wall clock time and date at job start Tue Mar 31 2020 08:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86803 * 119.99921 * 2 1 4 4 H 1.48506 * 109.47243 * 270.00224 * 3 2 1 5 5 H 1.48504 * 109.47112 * 29.99779 * 3 2 1 6 6 H 1.48501 * 109.47219 * 149.99908 * 3 2 1 7 7 C 1.38647 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99831 * 179.97438 * 7 2 1 9 9 O 1.34830 * 120.00256 * 0.02562 * 7 2 1 10 10 C 1.35747 * 117.00304 * 185.05544 * 9 7 2 11 11 C 1.38900 * 120.06742 * 354.48751 * 10 9 7 12 12 C 1.38082 * 119.93403 * 179.97438 * 11 10 9 13 13 C 1.38326 * 120.06515 * 359.74725 * 12 11 10 14 14 C 1.38280 * 120.13786 * 0.50421 * 13 12 11 15 15 C 1.50701 * 119.96726 * 179.76531 * 14 13 12 16 16 C 1.50703 * 109.47177 * 269.72956 * 15 14 13 17 17 O 1.21282 * 119.99825 * 359.97438 * 16 15 14 18 18 N 1.34771 * 119.99630 * 179.97438 * 16 15 14 19 19 C 1.46508 * 119.99882 * 180.02562 * 18 16 15 20 20 C 1.52997 * 109.47146 * 85.00163 * 19 18 16 21 21 C 1.53003 * 109.47007 * 180.02562 * 20 19 18 22 22 C 1.53007 * 109.46837 * 299.99759 * 21 20 19 23 23 C 1.52999 * 109.47050 * 59.99761 * 22 21 20 24 24 C 1.52999 * 109.47669 * 300.00160 * 23 22 21 25 25 C 1.38127 * 120.07029 * 359.49748 * 14 13 12 26 26 H 0.97002 * 119.99460 * 0.02562 * 1 2 3 27 27 H 1.08008 * 120.03717 * 0.02562 * 11 10 9 28 28 H 1.07994 * 119.96661 * 180.02562 * 12 11 10 29 29 H 1.07996 * 119.93099 * 180.27616 * 13 12 11 30 30 H 1.08998 * 109.47048 * 149.72785 * 15 14 13 31 31 H 1.09002 * 109.46509 * 29.72805 * 15 14 13 32 32 H 0.97002 * 120.00609 * 359.97438 * 18 16 15 33 33 H 1.08999 * 109.46920 * 324.99781 * 19 18 16 34 34 H 1.09005 * 109.46637 * 300.00003 * 20 19 18 35 35 H 1.08999 * 109.47523 * 59.99987 * 20 19 18 36 36 H 1.08999 * 109.46834 * 179.97438 * 21 20 19 37 37 H 1.08999 * 109.47350 * 59.99440 * 21 20 19 38 38 H 1.08999 * 109.46891 * 299.99962 * 22 21 20 39 39 H 1.08993 * 109.46563 * 180.02562 * 22 21 20 40 40 H 1.09002 * 109.46803 * 179.97438 * 23 22 21 41 41 H 1.09009 * 109.47103 * 60.00337 * 23 22 21 42 42 H 1.08999 * 109.46998 * 300.00243 * 24 23 22 43 43 H 1.08991 * 109.47160 * 179.97438 * 24 23 22 44 44 H 1.07991 * 120.03598 * 180.22833 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5472 1.4403 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3348 -2.3684 0.0005 10 6 2.0700 -3.5045 0.1077 11 6 3.4574 -3.4393 0.0957 12 6 4.2025 -4.5967 0.2053 13 6 3.5686 -5.8196 0.3323 14 6 2.1876 -5.8883 0.3394 15 6 1.5010 -7.2232 0.4726 16 6 1.2659 -7.8061 -0.8971 17 8 1.6206 -7.1973 -1.8843 18 7 0.6616 -9.0040 -1.0249 19 6 0.4336 -9.5710 -2.3565 20 6 1.6874 -10.3191 -2.8137 21 6 1.4494 -10.9107 -4.2046 22 6 0.2677 -11.8811 -4.1506 23 6 -0.9861 -11.1330 -3.6932 24 6 -0.7481 -10.5413 -2.3024 25 6 1.4366 -4.7342 0.2300 26 1 -0.4849 0.8401 -0.0004 27 1 3.9529 -2.4843 0.0015 28 1 5.2813 -4.5465 0.1965 29 1 4.1536 -6.7229 0.4224 30 1 0.5455 -7.0912 0.9802 31 1 2.1300 -7.8990 1.0520 32 1 0.3783 -9.4911 -0.2354 33 1 0.2124 -8.7684 -3.0601 34 1 2.5291 -9.6276 -2.8525 35 1 1.9086 -11.1217 -2.1101 36 1 2.3429 -11.4433 -4.5305 37 1 1.2285 -10.1079 -4.9080 38 1 0.4887 -12.6839 -3.4472 39 1 0.0985 -12.3029 -5.1413 40 1 -1.8280 -11.8242 -3.6552 41 1 -1.2070 -10.3301 -4.3967 42 1 -0.5272 -11.3441 -1.5990 43 1 -1.6411 -10.0080 -1.9769 44 1 0.3581 -4.7881 0.2393 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089587970.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:06 Heat of formation + Delta-G solvation = -65.656202 kcal Electronic energy + Delta-G solvation = -23960.435233 eV Core-core repulsion = 20456.206065 eV Total energy + Delta-G solvation = -3504.229168 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.08755 -38.94568 -38.04202 -36.36832 -34.14968 -32.34847 -31.95291 -31.03352 -29.70075 -29.01582 -26.81818 -25.17600 -22.97513 -22.70234 -21.57847 -20.97236 -20.38390 -19.81068 -17.63000 -17.05565 -16.77391 -16.34108 -15.40736 -15.09675 -14.91866 -14.51390 -14.35903 -14.33067 -14.06377 -13.80452 -13.47084 -13.28726 -13.01583 -12.81278 -12.50343 -12.43331 -12.33394 -11.79599 -11.54110 -11.44546 -11.40306 -11.21420 -10.95468 -10.77496 -10.73114 -10.68878 -10.55108 -10.47217 -10.39611 -9.61301 -9.26748 -9.02425 -8.77440 -7.98623 -7.14344 -6.38008 -3.96902 2.17063 2.46872 2.84947 3.16386 3.17634 3.22540 3.25907 4.02264 4.40680 4.47604 4.58400 4.67939 4.87622 4.97174 4.97940 5.13885 5.17339 5.17429 5.22206 5.27125 5.34627 5.35743 5.49522 5.56774 5.73096 5.74175 5.78675 5.81589 5.83824 5.87211 5.95968 6.00510 6.09753 6.16837 6.25108 6.41349 6.51421 6.73479 6.99453 7.14316 7.34488 7.44003 7.51042 7.55293 7.90728 8.07373 8.40804 9.07891 9.79511 10.80438 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.024435 B = 0.002637 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.604356 B =10615.912642 C =11057.764051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.390 4.390 8 H 0.091 0.909 9 O -0.180 6.180 10 C 0.155 3.845 11 C -0.231 4.231 12 C -0.075 4.075 13 C -0.196 4.196 14 C -0.032 4.032 15 C -0.095 4.095 16 C 0.514 3.486 17 O -0.518 6.518 18 N -0.737 5.737 19 C 0.145 3.855 20 C -0.129 4.129 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.126 4.126 25 C -0.175 4.175 26 H 0.269 0.731 27 H 0.126 0.874 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.397 0.603 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.594 -23.068 -2.222 23.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.084 6.084 10 C 0.102 3.898 11 C -0.250 4.250 12 C -0.093 4.093 13 C -0.215 4.215 14 C -0.033 4.033 15 C -0.134 4.134 16 C 0.300 3.700 17 O -0.392 6.392 18 N -0.390 5.390 19 C 0.040 3.960 20 C -0.168 4.168 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.155 4.155 24 C -0.164 4.164 25 C -0.194 4.194 26 H 0.079 0.921 27 H 0.144 0.856 28 H 0.125 0.875 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.230 0.770 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.422 -22.369 -2.967 22.568 hybrid contribution 0.408 0.569 0.363 0.789 sum 0.829 -21.799 -2.604 21.970 Atomic orbital electron populations 1.70049 1.05927 1.27499 1.46598 1.25271 0.95832 0.98759 0.96713 0.85724 0.78894 0.80187 0.78677 1.19930 1.20307 1.19235 1.21314 0.91774 0.80885 1.52662 0.89149 1.83976 1.34226 1.11370 1.78837 1.19276 0.90245 0.87962 0.92359 1.21174 0.93841 0.98956 1.11043 1.20675 0.98343 0.92346 0.97974 1.20343 0.93313 0.96875 1.11018 1.18664 0.93217 0.91799 0.99582 1.20600 1.02533 0.95860 0.94447 1.20759 0.76997 0.80295 0.91921 1.90755 1.48889 1.59682 1.39879 1.46128 1.62901 1.21164 1.08757 1.20928 0.94317 0.95702 0.85017 1.21918 0.98411 0.99701 0.96722 1.21504 0.98146 0.98900 0.97065 1.21567 0.94979 0.98084 1.01186 1.21485 0.97791 0.99930 0.96256 1.21799 0.97901 0.98571 0.98088 1.19942 0.99040 0.89991 1.10446 0.92138 0.85643 0.87518 0.87998 0.88323 0.88489 0.76956 0.89494 0.91307 0.92021 0.91844 0.91656 0.92026 0.91961 0.91625 0.91580 0.91529 0.91265 0.86875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.05 13.67 55.48 0.76 -25.29 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 21.10 29.55 -169.99 -5.02 16.08 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.39 -11.29 9.49 30.88 0.29 -10.99 16 8 H 0.09 2.43 5.20 -52.49 -0.27 2.15 16 9 O -0.18 -5.36 9.76 0.06 0.00 -5.36 16 10 C 0.15 3.96 6.65 -39.11 -0.26 3.70 16 11 C -0.23 -5.34 9.17 -39.39 -0.36 -5.70 16 12 C -0.08 -1.48 10.04 -39.61 -0.40 -1.88 16 13 C -0.20 -3.65 9.70 -39.53 -0.38 -4.03 16 14 C -0.03 -0.60 4.37 -104.65 -0.46 -1.06 16 15 C -0.09 -1.28 5.83 -29.03 -0.17 -1.45 16 16 C 0.51 7.56 7.79 -10.99 -0.09 7.47 16 17 O -0.52 -10.26 15.70 5.56 0.09 -10.18 16 18 N -0.74 -7.72 5.08 -53.80 -0.27 -7.99 16 19 C 0.14 1.48 2.45 -67.93 -0.17 1.31 16 20 C -0.13 -1.25 5.49 -26.73 -0.15 -1.40 16 21 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 22 C -0.12 -0.82 5.92 -26.73 -0.16 -0.97 16 23 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 24 C -0.13 -0.93 5.39 -26.73 -0.14 -1.08 16 25 C -0.17 -3.93 9.65 -39.39 -0.38 -4.31 16 26 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.13 2.88 5.64 -52.48 -0.30 2.58 16 28 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.10 1.15 8.08 -51.93 -0.42 0.73 16 31 H 0.10 1.02 8.08 -51.93 -0.42 0.60 16 32 H 0.40 2.85 8.60 -40.82 -0.35 2.50 16 33 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 42 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.11 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 361.45 15.07 5.45 5.45 Total: -1.00 -34.69 361.45 -9.02 -43.70 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.78 Total: 5.10 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -3.23 Total: -21.50 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.49 Total: -33.28 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: 0.09 Total: -15.54 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.69 -9.02 -43.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089587970.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.953 kcal (2) G-P(sol) polarization free energy of solvation -34.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds