Wall clock time and date at job start Tue Mar 31 2020 08:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48500 * 109.47031 * 270.00367 * 3 2 1 5 5 H 1.48500 * 109.46790 * 30.00128 * 3 2 1 6 6 H 1.48496 * 109.47074 * 150.00006 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 269.97892 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00166 * 179.97438 * 18 16 15 20 20 C 1.52991 * 109.47307 * 180.02562 * 19 18 16 21 21 C 1.53007 * 109.47091 * 180.02562 * 20 19 18 22 22 C 1.53777 * 113.61524 * 274.13758 * 21 20 19 23 23 C 1.53957 * 87.01775 * 220.04667 * 22 21 20 24 24 C 1.53780 * 113.61250 * 176.52446 * 21 20 19 25 25 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 26 26 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 28 28 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 29 29 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 30 30 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 31 31 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 32 32 H 0.97004 * 120.00079 * 0.02562 * 18 16 15 33 33 H 1.09004 * 109.47060 * 300.00868 * 19 18 16 34 34 H 1.09005 * 109.46669 * 60.00018 * 19 18 16 35 35 H 1.09001 * 109.47096 * 299.99723 * 20 19 18 36 36 H 1.09000 * 109.47823 * 60.00003 * 20 19 18 37 37 H 1.09000 * 112.84952 * 45.33274 * 21 20 19 38 38 H 1.09007 * 113.61412 * 334.56356 * 22 21 20 39 39 H 1.08992 * 113.61682 * 105.46847 * 22 21 20 40 40 H 1.08996 * 113.53897 * 270.81106 * 23 22 21 41 41 H 1.09010 * 113.74079 * 139.93929 * 23 22 21 42 42 H 1.09004 * 113.61748 * 254.52744 * 24 21 20 43 43 H 1.08999 * 113.61573 * 25.35862 * 24 21 20 44 44 H 1.08006 * 120.03219 * 180.02562 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2648 -7.8050 -0.9052 17 8 1.6189 -7.1950 -1.8918 18 7 0.6604 -9.0027 -1.0343 19 6 0.4306 -9.5674 -2.3663 20 6 -0.2663 -10.9228 -2.2323 21 6 -0.5058 -11.5129 -3.6236 22 6 -1.8098 -11.0311 -4.2810 23 6 -1.9922 -12.4730 -4.7887 24 6 -1.1279 -12.9190 -3.5975 25 6 1.4365 -4.7345 0.2253 26 1 -0.4849 0.8401 -0.0004 27 1 3.9527 -2.4857 -0.0140 28 1 5.2811 -4.5471 0.1902 29 1 4.1533 -6.7247 0.4045 30 1 2.1300 -7.9004 1.0433 31 1 0.5456 -7.0924 0.9734 32 1 0.3769 -9.4904 -0.2452 33 1 -0.1993 -8.8909 -2.9441 34 1 1.3856 -9.6982 -2.8752 35 1 0.3632 -11.5995 -1.6545 36 1 -1.2214 -10.7917 -1.7236 37 1 0.3660 -11.4331 -4.2730 38 1 -2.5710 -10.7206 -3.5651 39 1 -1.6543 -10.3032 -5.0772 40 1 -1.5277 -12.6554 -5.7577 41 1 -3.0214 -12.8289 -4.7389 42 1 -0.4227 -13.7132 -3.8429 43 1 -1.7011 -13.1262 -2.6938 44 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089775793.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:13 Heat of formation + Delta-G solvation = -35.754327 kcal Electronic energy + Delta-G solvation = -23256.420878 eV Core-core repulsion = 19753.488353 eV Total energy + Delta-G solvation = -3502.932525 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.86010 -39.22556 -38.64227 -36.45765 -35.05400 -32.39171 -32.04818 -30.96206 -29.12062 -27.23119 -25.99875 -25.31558 -24.81326 -22.10978 -21.59871 -21.15038 -20.17079 -19.63843 -17.62049 -17.01796 -16.78934 -16.05564 -15.91870 -15.57650 -15.03024 -14.81693 -14.58949 -14.30989 -14.05178 -13.68706 -13.35938 -13.31317 -12.90393 -12.79443 -12.71050 -12.43415 -12.34089 -11.81576 -11.69403 -11.52815 -11.36081 -11.21418 -10.95064 -10.76870 -10.72816 -10.56862 -10.54060 -10.49675 -10.39517 -9.64706 -9.26678 -9.05911 -8.77283 -7.98636 -7.14237 -6.37821 -3.96637 2.17086 2.46978 2.84935 3.16683 3.17752 3.22704 3.27338 4.02434 4.18445 4.27355 4.38842 4.50350 4.61173 4.80425 4.96696 5.02739 5.09398 5.17434 5.19837 5.25148 5.33851 5.38464 5.41765 5.49350 5.56041 5.57726 5.63601 5.72531 5.77002 5.81948 5.88314 5.96259 6.00835 6.15663 6.25214 6.41425 6.43660 6.73535 6.99568 7.14512 7.34538 7.44061 7.50824 7.53233 7.90823 8.07540 8.39351 9.08023 9.79699 10.80599 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.022626 B = 0.002308 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.204380 B =12131.371698 C =12952.134628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.037 3.963 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.390 4.390 8 H 0.091 0.909 9 O -0.180 6.180 10 C 0.154 3.846 11 C -0.230 4.230 12 C -0.075 4.075 13 C -0.196 4.196 14 C -0.033 4.033 15 C -0.094 4.094 16 C 0.512 3.488 17 O -0.519 6.519 18 N -0.741 5.741 19 C 0.120 3.880 20 C -0.120 4.120 21 C -0.108 4.108 22 C -0.140 4.140 23 C -0.144 4.144 24 C -0.137 4.137 25 C -0.175 4.175 26 H 0.269 0.731 27 H 0.126 0.874 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.398 0.602 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.037 -24.054 -2.322 24.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.084 6.084 10 C 0.101 3.899 11 C -0.250 4.250 12 C -0.094 4.094 13 C -0.215 4.215 14 C -0.033 4.033 15 C -0.134 4.134 16 C 0.298 3.702 17 O -0.393 6.393 18 N -0.395 5.395 19 C -0.004 4.004 20 C -0.158 4.158 21 C -0.127 4.127 22 C -0.177 4.177 23 C -0.182 4.182 24 C -0.174 4.174 25 C -0.194 4.194 26 H 0.079 0.921 27 H 0.144 0.856 28 H 0.125 0.875 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.231 0.769 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.207 -23.365 -3.083 23.599 hybrid contribution 0.378 0.569 0.304 0.747 sum -0.829 -22.797 -2.779 22.980 Atomic orbital electron populations 1.70047 1.05921 1.27495 1.46584 1.25277 0.95843 0.98770 0.96729 0.85717 0.78886 0.80174 0.78670 1.19934 1.20320 1.19236 1.21314 0.91773 0.80881 1.52656 0.89144 1.83976 1.34216 1.11355 1.78850 1.19281 0.90258 0.87965 0.92387 1.21175 0.93833 0.98983 1.10975 1.20675 0.98357 0.92343 0.97995 1.20347 0.93318 0.96870 1.11011 1.18667 0.93229 0.91802 0.99621 1.20593 1.02554 0.95872 0.94367 1.20768 0.77068 0.80357 0.91976 1.90761 1.49124 1.59415 1.40017 1.46058 1.63003 1.21429 1.08999 1.21295 1.00328 0.93996 0.84745 1.21782 1.01002 0.95671 0.97347 1.22484 0.97979 0.96074 0.96187 1.23037 0.97431 0.96705 1.00519 1.22844 1.00207 0.96885 0.98241 1.22936 0.99140 0.96496 0.98844 1.19946 0.99057 0.89993 1.10429 0.92143 0.85633 0.87496 0.87965 0.88449 0.88291 0.76870 0.91555 0.91775 0.91233 0.91168 0.88948 0.89989 0.91318 0.90270 0.91542 0.91575 0.90102 0.86852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.05 13.67 55.48 0.76 -25.29 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 21.12 29.55 -169.99 -5.02 16.10 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.39 -11.29 9.49 30.89 0.29 -11.00 16 8 H 0.09 2.43 5.21 -52.49 -0.27 2.16 16 9 O -0.18 -5.37 9.76 0.05 0.00 -5.36 16 10 C 0.15 3.96 6.65 -39.11 -0.26 3.70 16 11 C -0.23 -5.33 9.17 -39.39 -0.36 -5.69 16 12 C -0.08 -1.49 10.04 -39.61 -0.40 -1.89 16 13 C -0.20 -3.66 9.70 -39.54 -0.38 -4.05 16 14 C -0.03 -0.61 4.37 -104.65 -0.46 -1.07 16 15 C -0.09 -1.28 5.83 -29.03 -0.17 -1.45 16 16 C 0.51 7.64 7.82 -10.99 -0.09 7.55 16 17 O -0.52 -10.50 16.03 5.56 0.09 -10.41 16 18 N -0.74 -7.76 5.56 -60.30 -0.33 -8.09 16 19 C 0.12 1.20 5.67 -4.05 -0.02 1.17 16 20 C -0.12 -0.81 5.15 -26.73 -0.14 -0.94 16 21 C -0.11 -0.72 3.64 -89.81 -0.33 -1.05 16 22 C -0.14 -0.97 7.65 -25.83 -0.20 -1.17 16 23 C -0.14 -0.88 8.09 -25.82 -0.21 -1.09 16 24 C -0.14 -0.80 7.65 -25.92 -0.20 -0.99 16 25 C -0.17 -3.94 9.65 -39.40 -0.38 -4.32 16 26 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 28 H 0.11 1.78 8.06 -52.48 -0.42 1.35 16 29 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.10 1.02 8.08 -51.93 -0.42 0.60 16 31 H 0.10 1.15 8.08 -51.93 -0.42 0.73 16 32 H 0.40 2.79 8.47 -40.82 -0.35 2.44 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.44 7.88 -51.93 -0.41 0.03 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.57 7.92 -51.93 -0.41 0.15 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.38 8.14 -51.92 -0.42 -0.05 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.44 8.10 -51.93 -0.42 0.01 16 44 H 0.11 2.48 8.06 -52.48 -0.42 2.05 16 LS Contribution 368.93 15.07 5.56 5.56 Total: -1.00 -35.13 368.93 -9.12 -44.25 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -6.78 Total: 4.57 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -3.39 Total: -21.33 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.42 Total: -33.38 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.09 Total: -15.77 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.13 -9.12 -44.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089775793.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.494 kcal (2) G-P(sol) polarization free energy of solvation -35.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds