Wall clock time and date at job start Tue Mar 31 2020 08:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00138 * 2 1 4 4 H 1.48500 * 109.47073 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47070 * 300.00324 * 3 2 1 6 6 H 1.48504 * 109.46905 * 60.00249 * 3 2 1 7 7 C 1.37880 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99711 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00320 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47132 * 180.02562 * 9 7 2 11 11 O 1.42898 * 109.47385 * 179.97438 * 10 9 7 12 12 C 1.35896 * 117.00301 * 180.02562 * 11 10 9 13 13 C 1.38799 * 120.02059 * 0.02562 * 12 11 10 14 14 C 1.38170 * 120.08639 * 179.97438 * 13 12 11 15 15 C 1.38167 * 120.12512 * 359.77137 * 14 13 12 16 16 C 1.38899 * 120.03610 * 0.50623 * 15 14 13 17 17 N 1.39913 * 120.04016 * 179.74409 * 16 15 14 18 18 C 1.34776 * 120.00190 * 214.81593 * 17 16 15 19 19 O 1.21290 * 119.99808 * 355.38393 * 18 17 16 20 20 C 1.50701 * 120.00180 * 175.38300 * 18 17 16 21 21 C 1.53005 * 109.46912 * 180.02562 * 20 18 17 22 22 C 1.53001 * 109.46879 * 180.02562 * 21 20 18 23 23 C 1.53000 * 117.49463 * 243.74773 * 22 21 20 24 24 C 1.52998 * 117.49800 * 175.08790 * 22 21 20 25 25 C 1.38583 * 120.01752 * 180.02562 * 12 11 10 26 26 H 0.96997 * 119.99865 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47232 * 60.00222 * 9 7 2 28 28 H 1.08996 * 109.46644 * 299.99778 * 9 7 2 29 29 H 1.09007 * 109.47549 * 59.99772 * 10 9 7 30 30 H 1.09001 * 109.47367 * 300.00185 * 10 9 7 31 31 H 1.08005 * 119.95949 * 359.97438 * 13 12 11 32 32 H 1.07998 * 119.93817 * 180.02562 * 14 13 12 33 33 H 1.07994 * 119.98304 * 180.25517 * 15 14 13 34 34 H 0.97002 * 120.00129 * 34.81909 * 17 16 15 35 35 H 1.09001 * 109.47189 * 60.00379 * 20 18 17 36 36 H 1.09001 * 109.46828 * 299.99897 * 20 18 17 37 37 H 1.09001 * 109.47197 * 60.00000 * 21 20 18 38 38 H 1.09005 * 109.46720 * 299.99873 * 21 20 18 39 39 H 1.09002 * 115.54847 * 29.41165 * 22 21 20 40 40 H 1.08997 * 117.50029 * 359.97438 * 23 22 21 41 41 H 1.08999 * 117.49910 * 145.02350 * 23 22 21 42 42 H 1.08996 * 117.49997 * 214.98001 * 24 22 21 43 43 H 1.09004 * 117.49666 * 359.97438 * 24 22 21 44 44 H 1.08001 * 120.06851 * 0.03924 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 8 1.5308 -4.8997 0.0001 12 6 2.2709 -6.0394 0.0007 13 6 3.6570 -5.9673 0.0013 14 6 4.4109 -7.1252 0.0024 15 6 3.7877 -8.3583 0.0078 16 6 2.4010 -8.4366 0.0014 17 7 1.7699 -9.6853 0.0015 18 6 0.6138 -9.8562 -0.6700 19 8 0.0771 -8.9087 -1.2042 20 6 -0.0119 -11.2244 -0.7571 21 6 -1.3062 -11.1424 -1.5689 22 6 -1.9418 -12.5314 -1.6568 23 6 -2.0600 -13.1677 -3.0432 24 6 -3.3097 -12.6408 -2.3334 25 6 1.6421 -7.2744 0.0008 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5568 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8720 -3.6044 0.8895 30 1 2.8719 -3.6044 -0.8905 31 1 4.1470 -5.0048 0.0008 32 1 5.4893 -7.0663 0.0033 33 1 4.3792 -9.2619 0.0129 34 1 2.1643 -10.4281 0.4848 35 1 -0.2344 -11.5867 0.2465 36 1 0.6804 -11.9100 -1.2459 37 1 -1.0834 -10.7802 -2.5725 38 1 -1.9986 -10.4567 -1.0804 39 1 -1.7425 -13.1938 -0.8143 40 1 -1.6853 -12.5966 -3.8926 41 1 -1.9389 -14.2487 -3.1128 42 1 -4.0103 -13.3754 -1.9363 43 1 -3.7570 -11.7232 -2.7155 44 1 0.5637 -7.3325 -0.0003 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115035713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:47:38 Heat of formation + Delta-G solvation = -41.980464 kcal Electronic energy + Delta-G solvation = -23125.294318 eV Core-core repulsion = 19622.091807 eV Total energy + Delta-G solvation = -3503.202511 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.67845 -39.31339 -37.93304 -37.08967 -34.57205 -33.32717 -32.65021 -30.83295 -29.56734 -28.99271 -25.63003 -24.91948 -22.90795 -22.69327 -22.04478 -20.99296 -20.63326 -20.14114 -18.33370 -17.23058 -16.43575 -16.21312 -16.07326 -15.64939 -15.40918 -15.25022 -15.18877 -14.62981 -14.39614 -14.12195 -13.55396 -13.33891 -12.95413 -12.73845 -12.49497 -12.30785 -11.94026 -11.77717 -11.71455 -11.64576 -11.54294 -11.40086 -10.92579 -10.81149 -10.65275 -10.53761 -10.31017 -10.20488 -9.81813 -9.78933 -9.61683 -9.25207 -8.43225 -8.24470 -7.79867 -6.07535 -4.12085 1.38081 1.65818 2.47034 2.82430 3.28346 3.35182 3.38947 3.44658 3.86155 3.99037 4.27150 4.38815 4.44406 4.58641 4.60947 4.82614 4.94394 5.01710 5.09531 5.20726 5.28768 5.29755 5.31050 5.39214 5.48738 5.56151 5.63323 5.70782 5.75293 5.80514 5.92491 6.05197 6.06456 6.07682 6.30546 6.39893 6.55070 6.62739 6.78078 7.00962 7.23915 7.54912 7.68328 7.84637 7.97360 8.10832 8.27059 8.93797 9.51976 11.04129 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018035 B = 0.002333 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.154860 B =12000.807285 C =13373.541759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.065 3.935 11 O -0.312 6.312 12 C 0.163 3.837 13 C -0.226 4.226 14 C -0.063 4.063 15 C -0.196 4.196 16 C 0.174 3.826 17 N -0.674 5.674 18 C 0.506 3.494 19 O -0.510 6.510 20 C -0.134 4.134 21 C -0.077 4.077 22 C -0.155 4.155 23 C -0.183 4.183 24 C -0.181 4.181 25 C -0.164 4.164 26 H 0.263 0.737 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.132 0.868 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.410 0.590 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.722 -28.655 -0.658 28.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.009 4.009 11 O -0.225 6.225 12 C 0.115 3.885 13 C -0.245 4.245 14 C -0.081 4.081 15 C -0.217 4.217 16 C 0.080 3.920 17 N -0.320 5.320 18 C 0.294 3.706 19 O -0.383 6.383 20 C -0.174 4.174 21 C -0.115 4.115 22 C -0.173 4.173 23 C -0.219 4.219 24 C -0.218 4.218 25 C -0.184 4.184 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.245 0.755 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.912 -27.852 -1.078 27.938 hybrid contribution 0.940 0.583 0.254 1.135 sum 2.852 -27.269 -0.824 27.431 Atomic orbital electron populations 1.69989 1.06101 1.26831 1.49791 1.25003 0.94912 0.99403 0.94976 0.86427 0.79965 0.83272 0.77693 1.19644 1.20852 1.20857 1.21011 0.93071 0.90191 1.52066 0.92295 1.19135 0.94210 0.89009 0.98944 1.23349 0.97091 0.80785 0.99684 1.86193 1.36499 1.13130 1.86665 1.18992 0.89866 0.87366 0.92301 1.21393 0.93128 0.99953 1.10030 1.20658 0.99365 0.91279 0.96833 1.20627 0.92131 0.98233 1.10711 1.17323 0.91010 0.84306 0.99336 1.43502 1.24753 1.11510 1.52202 1.20981 0.80246 0.91711 0.77695 1.90790 1.60674 1.42281 1.44602 1.21654 0.98700 0.93872 1.03134 1.20956 0.94767 0.94639 1.01093 1.22336 1.00266 0.98238 0.96439 1.23076 1.02549 1.00619 0.95706 1.22986 0.90941 1.03366 1.04460 1.20422 1.01472 0.88559 1.07986 0.92770 0.95330 0.95376 0.93064 0.93061 0.85065 0.85731 0.86152 0.75465 0.88544 0.88515 0.90788 0.90462 0.87732 0.88675 0.88966 0.88846 0.88563 0.83826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.53 -14.92 9.11 -34.44 -0.31 -15.24 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 9 C 0.02 0.65 5.34 -27.88 -0.15 0.50 16 10 C 0.06 1.45 4.68 37.16 0.17 1.62 16 11 O -0.31 -6.90 10.13 -19.41 -0.20 -7.09 16 12 C 0.16 3.06 6.68 -39.25 -0.26 2.80 16 13 C -0.23 -3.64 9.03 -39.40 -0.36 -3.99 16 14 C -0.06 -0.81 10.03 -39.63 -0.40 -1.21 16 15 C -0.20 -2.35 9.96 -39.36 -0.39 -2.75 16 16 C 0.17 2.38 6.30 -83.72 -0.53 1.85 16 17 N -0.67 -6.73 5.34 -9.88 -0.05 -6.79 16 18 C 0.51 5.66 7.67 -10.99 -0.08 5.57 16 19 O -0.51 -8.24 13.42 5.55 0.07 -8.16 16 20 C -0.13 -0.90 5.66 -27.88 -0.16 -1.06 16 21 C -0.08 -0.63 4.78 -26.73 -0.13 -0.76 16 22 C -0.15 -1.02 5.73 -90.62 -0.52 -1.54 16 23 C -0.18 -1.17 10.18 -26.69 -0.27 -1.44 16 24 C -0.18 -1.22 10.25 -26.69 -0.27 -1.49 16 25 C -0.16 -2.86 8.64 -39.25 -0.34 -3.19 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 1.07 7.66 -51.93 -0.40 0.67 16 30 H 0.05 1.09 7.66 -51.93 -0.40 0.69 16 31 H 0.13 2.06 6.29 -52.48 -0.33 1.73 16 32 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.41 2.37 8.82 -40.82 -0.36 2.01 16 35 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.71 7.83 -51.93 -0.41 0.30 16 38 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 39 H 0.10 0.55 8.08 -51.93 -0.42 0.14 16 40 H 0.09 0.63 8.03 -51.93 -0.42 0.22 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.14 2.73 6.22 -52.49 -0.33 2.41 16 LS Contribution 370.41 15.07 5.58 5.58 Total: -1.00 -34.03 370.41 -9.80 -43.83 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.82 Total: 0.98 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -4.10 Total: -18.69 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: 0.68 Total: -33.00 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.12 Total: -15.26 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.03 -9.80 -43.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115035713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.848 kcal (2) G-P(sol) polarization free energy of solvation -34.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds