Wall clock time and date at job start Tue Mar 31 2020 08:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99790 * 2 1 4 4 H 1.48504 * 109.46940 * 90.00289 * 3 2 1 5 5 H 1.48503 * 109.47200 * 330.00686 * 3 2 1 6 6 H 1.48495 * 109.47338 * 210.00505 * 3 2 1 7 7 C 1.37872 * 120.00631 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99752 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00713 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47686 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47114 * 175.95373 * 10 9 7 12 12 C 1.47020 * 110.99978 * 69.91174 * 11 10 9 13 13 C 1.53098 * 109.25779 * 177.60786 * 12 11 10 14 14 O 1.43012 * 109.26068 * 56.84400 * 13 12 11 15 15 C 1.43008 * 113.74177 * 301.33075 * 14 13 12 16 16 C 1.47011 * 111.00534 * 306.27594 * 11 10 9 17 17 H 1.08996 * 109.50486 * 62.45366 * 16 11 10 18 18 C 1.53005 * 109.50617 * 302.32827 * 16 11 10 19 19 C 1.50699 * 109.47384 * 173.60642 * 18 16 11 20 20 O 1.21252 * 119.99576 * 354.17710 * 19 18 16 21 21 C 1.47169 * 119.99918 * 174.17191 * 19 18 16 22 22 C 1.39849 * 120.16953 * 359.72918 * 21 19 18 23 23 C 1.37893 * 119.82222 * 179.76763 * 22 21 19 24 24 C 1.38408 * 120.16782 * 0.48147 * 23 22 21 25 25 C 1.38403 * 120.35004 * 359.78738 * 24 23 22 26 26 C 1.37883 * 120.17421 * 359.95942 * 25 24 23 27 27 H 0.96992 * 120.00332 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.47269 * 300.00544 * 9 7 2 29 29 H 1.09005 * 109.46672 * 59.99717 * 9 7 2 30 30 H 1.08998 * 109.47325 * 295.95782 * 10 9 7 31 31 H 1.09002 * 109.46638 * 55.95774 * 10 9 7 32 32 H 1.09001 * 109.50046 * 297.53983 * 12 11 10 33 33 H 1.08998 * 109.50449 * 57.67082 * 12 11 10 34 34 H 1.09001 * 109.50671 * 176.78409 * 13 12 11 35 35 H 1.09005 * 109.50591 * 296.91039 * 13 12 11 36 36 H 1.09004 * 109.51010 * 178.60210 * 15 14 13 37 37 H 1.08996 * 109.50724 * 298.73643 * 15 14 13 38 38 H 1.09006 * 109.46666 * 293.60743 * 18 16 11 39 39 H 1.09002 * 109.47280 * 53.60264 * 18 16 11 40 40 H 1.08002 * 120.09245 * 0.02562 * 22 21 19 41 41 H 1.07998 * 119.91756 * 180.25394 * 23 22 21 42 42 H 1.08004 * 119.82106 * 179.76663 * 24 23 22 43 43 H 1.08003 * 119.91141 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.08468 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 1.4464 2.6528 -0.6999 6 1 3.5465 1.4404 -0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 7 5.4874 -2.6374 -0.0993 12 6 6.0989 -2.1359 1.1401 13 6 7.6231 -2.2100 1.0170 14 8 8.0403 -1.4673 -0.1318 15 6 7.4642 -1.9293 -1.3565 16 6 5.9384 -1.8523 -1.2574 17 1 5.6336 -0.8132 -1.1336 18 6 5.3143 -2.4200 -2.5339 19 6 5.6491 -1.5239 -3.6983 20 8 6.2294 -0.4761 -3.5097 21 6 5.2719 -1.9207 -5.0644 22 6 4.6077 -3.1312 -5.2865 23 6 4.2533 -3.4937 -6.5689 24 6 4.5622 -2.6676 -7.6357 25 6 5.2243 -1.4708 -7.4245 26 6 5.5808 -1.0918 -6.1476 27 1 -0.4850 0.8399 0.0004 28 1 3.8746 -0.6798 -0.8911 29 1 3.8752 -0.6802 0.8889 30 1 3.7191 -3.1287 0.9232 31 1 3.6001 -3.1709 -0.8523 32 1 5.7967 -1.1012 1.3021 33 1 5.7714 -2.7474 1.9808 34 1 8.0815 -1.7863 1.9106 35 1 7.9294 -3.2505 0.9085 36 1 7.8076 -1.3024 -2.1795 37 1 7.7658 -2.9615 -1.5339 38 1 5.7099 -3.4188 -2.7185 39 1 4.2320 -2.4739 -2.4163 40 1 4.3691 -3.7785 -4.4555 41 1 3.7366 -4.4262 -6.7418 42 1 4.2853 -2.9588 -8.6382 43 1 5.4622 -0.8318 -8.2622 44 1 6.0978 -0.1578 -5.9846 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119256746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:09 Heat of formation + Delta-G solvation = -50.201721 kcal Electronic energy + Delta-G solvation = -25315.856887 eV Core-core repulsion = 21812.297876 eV Total energy + Delta-G solvation = -3503.559011 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.42516 -39.31983 -38.06134 -36.14580 -33.01714 -32.57700 -31.46203 -31.07103 -30.33348 -28.16154 -26.69334 -24.27355 -23.63670 -22.89114 -22.19569 -21.41502 -19.82583 -18.75255 -17.47268 -17.01049 -16.39742 -15.99875 -15.82533 -15.61777 -14.93954 -14.84142 -14.52053 -14.41676 -14.20260 -13.79160 -13.62696 -13.37912 -13.36366 -13.15281 -12.69357 -12.52610 -12.05448 -11.84031 -11.68283 -11.52014 -11.39260 -11.23439 -10.96986 -10.85988 -10.62230 -10.26345 -9.87133 -9.79054 -9.59801 -9.35744 -9.25369 -9.14528 -9.09478 -8.58325 -7.80212 -6.10420 -4.09125 0.59160 1.22777 2.42044 3.27662 3.35975 3.42547 3.70037 3.82991 4.01589 4.41249 4.43628 4.66911 4.77598 4.89167 4.94856 5.05598 5.15587 5.22813 5.24707 5.27672 5.32372 5.44693 5.45491 5.56184 5.67749 5.71554 5.83416 5.84340 5.96801 6.01610 6.08739 6.14546 6.18156 6.23629 6.26947 6.29977 6.39309 6.63473 6.72898 7.10656 7.11424 7.30313 7.36955 7.46882 7.60047 7.77502 8.45483 8.93464 9.52766 11.02516 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.009822 B = 0.005667 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.141995 B = 4939.852716 C = 6654.726202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.872 3.128 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.074 0.926 9 C -0.048 4.048 10 C 0.062 3.938 11 N -0.536 5.536 12 C 0.016 3.984 13 C 0.063 3.937 14 O -0.385 6.385 15 C 0.069 3.931 16 C 0.054 3.946 17 H 0.070 0.930 18 C -0.161 4.161 19 C 0.398 3.602 20 O -0.449 6.449 21 C -0.164 4.164 22 C -0.069 4.069 23 C -0.133 4.133 24 C -0.093 4.093 25 C -0.136 4.136 26 C -0.063 4.063 27 H 0.263 0.737 28 H 0.020 0.980 29 H 0.011 0.989 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.099 0.901 37 H 0.051 0.949 38 H 0.103 0.897 39 H 0.120 0.880 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.374 -8.198 -10.874 19.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.700 3.300 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.092 0.908 9 C -0.086 4.086 10 C -0.065 4.065 11 N -0.260 5.260 12 C -0.113 4.113 13 C -0.014 4.014 14 O -0.304 6.304 15 C -0.008 4.008 16 C -0.055 4.055 17 H 0.088 0.912 18 C -0.199 4.199 19 C 0.275 3.725 20 O -0.324 6.324 21 C -0.165 4.165 22 C -0.087 4.087 23 C -0.151 4.151 24 C -0.111 4.111 25 C -0.154 4.154 26 C -0.082 4.082 27 H 0.073 0.927 28 H 0.038 0.962 29 H 0.029 0.971 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.069 0.931 38 H 0.121 0.879 39 H 0.137 0.863 40 H 0.153 0.847 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.144 0.856 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 13.816 -7.869 -10.814 19.229 hybrid contribution -0.447 1.533 0.113 1.600 sum 13.370 -6.336 -10.701 18.259 Atomic orbital electron populations 1.69898 1.06225 1.26940 1.50836 1.24984 0.94661 0.99014 0.94381 0.86884 0.80576 0.83935 0.78628 1.20242 1.21233 1.19009 1.20986 0.89035 0.94477 1.51252 0.90839 1.20176 0.98032 0.93861 0.96540 1.22232 0.83684 0.98626 1.01953 1.62629 1.09661 1.51863 1.01870 1.22751 0.94856 1.00171 0.93483 1.22679 0.93719 0.96204 0.88800 1.87969 1.68921 1.58092 1.15387 1.22798 0.91522 0.99420 0.87029 1.22053 0.95174 0.97919 0.90342 0.91239 1.22084 1.04960 1.00110 0.92732 1.22519 0.74991 0.85766 0.89234 1.90514 1.31677 1.23003 1.87209 1.20573 1.03815 0.97003 0.95065 1.21558 0.94488 0.94963 0.97725 1.21169 1.00973 1.00428 0.92561 1.21415 0.96377 0.94073 0.99220 1.21140 1.00029 0.97249 0.96932 1.21453 0.96122 0.98773 0.91818 0.92678 0.96183 0.97118 0.91209 0.90864 0.93387 0.89738 0.88954 0.92694 0.88296 0.93054 0.87891 0.86268 0.84661 0.85333 0.85730 0.85563 0.84970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 3 Si 0.87 22.45 27.47 -169.99 -4.67 17.78 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 6 H -0.27 -6.81 6.54 56.52 0.37 -6.45 16 7 C -0.52 -14.51 9.66 -34.44 -0.33 -14.84 16 8 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 9 C -0.05 -1.12 3.24 -27.89 -0.09 -1.21 16 10 C 0.06 1.18 4.74 -3.83 -0.02 1.16 16 11 N -0.54 -8.95 4.75 -226.34 -1.07 -10.03 16 12 C 0.02 0.25 5.39 -3.71 -0.02 0.23 16 13 C 0.06 0.87 7.01 37.21 0.26 1.13 16 14 O -0.39 -6.34 10.83 -35.23 -0.38 -6.72 16 15 C 0.07 1.07 6.02 37.21 0.22 1.29 16 16 C 0.05 0.91 1.09 -67.60 -0.07 0.83 16 17 H 0.07 1.44 5.95 -51.93 -0.31 1.13 16 18 C -0.16 -2.34 3.61 -27.88 -0.10 -2.44 16 19 C 0.40 6.01 6.77 -30.68 -0.21 5.80 16 20 O -0.45 -8.02 14.29 5.58 0.08 -7.94 16 21 C -0.16 -2.14 5.87 -105.07 -0.62 -2.75 16 22 C -0.07 -0.76 9.45 -39.11 -0.37 -1.13 16 23 C -0.13 -1.26 10.03 -39.64 -0.40 -1.65 16 24 C -0.09 -0.83 10.04 -39.46 -0.40 -1.23 16 25 C -0.14 -1.34 10.03 -39.65 -0.40 -1.74 16 26 C -0.06 -0.77 9.60 -39.11 -0.38 -1.15 16 27 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.02 0.49 5.02 -51.93 -0.26 0.23 16 29 H 0.01 0.26 6.34 -51.93 -0.33 -0.07 16 30 H 0.07 1.32 8.04 -51.93 -0.42 0.91 16 31 H 0.07 1.35 6.49 -51.93 -0.34 1.01 16 32 H 0.05 0.87 6.81 -51.93 -0.35 0.51 16 33 H 0.08 1.19 8.09 -51.93 -0.42 0.77 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 1.55 6.38 -51.93 -0.33 1.22 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.10 1.19 7.83 -51.93 -0.41 0.78 16 39 H 0.12 1.87 6.03 -51.93 -0.31 1.55 16 40 H 0.14 1.27 6.94 -52.49 -0.36 0.90 16 41 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 42 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 43 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 44 H 0.13 1.60 7.65 -52.49 -0.40 1.20 16 LS Contribution 346.52 15.07 5.22 5.22 Total: -1.00 -33.02 346.52 -9.43 -42.45 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.37 Total: 1.84 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -3.01 Total: -15.71 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: -0.30 Total: -36.93 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.30 Total: -14.65 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.67 Total: 17.78 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.02 -9.43 -42.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119256746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.752 kcal (2) G-P(sol) polarization free energy of solvation -33.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds