Wall clock time and date at job start Tue Mar 31 2020 08:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99790 * 2 1 4 4 H 1.48504 * 109.46940 * 90.00289 * 3 2 1 5 5 H 1.48503 * 109.47200 * 330.00686 * 3 2 1 6 6 H 1.48495 * 109.47338 * 210.00505 * 3 2 1 7 7 C 1.37872 * 120.00631 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99752 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00713 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47686 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47114 * 175.95373 * 10 9 7 12 12 C 1.47020 * 110.99978 * 69.91174 * 11 10 9 13 13 C 1.53098 * 109.25779 * 177.60786 * 12 11 10 14 14 O 1.43012 * 109.26068 * 56.84400 * 13 12 11 15 15 C 1.43008 * 113.74177 * 301.33075 * 14 13 12 16 16 C 1.47011 * 111.00534 * 306.27594 * 11 10 9 17 17 H 1.08996 * 109.50486 * 62.45366 * 16 11 10 18 18 C 1.53005 * 109.50617 * 302.32827 * 16 11 10 19 19 C 1.50699 * 109.47384 * 173.60642 * 18 16 11 20 20 O 1.21252 * 119.99576 * 354.17710 * 19 18 16 21 21 C 1.47169 * 119.99918 * 174.17191 * 19 18 16 22 22 C 1.39849 * 120.16953 * 359.72918 * 21 19 18 23 23 C 1.37893 * 119.82222 * 179.76763 * 22 21 19 24 24 C 1.38408 * 120.16782 * 0.48147 * 23 22 21 25 25 C 1.38403 * 120.35004 * 359.78738 * 24 23 22 26 26 C 1.37883 * 120.17421 * 359.95942 * 25 24 23 27 27 H 0.96992 * 120.00332 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.47269 * 300.00544 * 9 7 2 29 29 H 1.09005 * 109.46672 * 59.99717 * 9 7 2 30 30 H 1.08998 * 109.47325 * 295.95782 * 10 9 7 31 31 H 1.09002 * 109.46638 * 55.95774 * 10 9 7 32 32 H 1.09001 * 109.50046 * 297.53983 * 12 11 10 33 33 H 1.08998 * 109.50449 * 57.67082 * 12 11 10 34 34 H 1.09001 * 109.50671 * 176.78409 * 13 12 11 35 35 H 1.09005 * 109.50591 * 296.91039 * 13 12 11 36 36 H 1.09004 * 109.51010 * 178.60210 * 15 14 13 37 37 H 1.08996 * 109.50724 * 298.73643 * 15 14 13 38 38 H 1.09006 * 109.46666 * 293.60743 * 18 16 11 39 39 H 1.09002 * 109.47280 * 53.60264 * 18 16 11 40 40 H 1.08002 * 120.09245 * 0.02562 * 22 21 19 41 41 H 1.07998 * 119.91756 * 180.25394 * 23 22 21 42 42 H 1.08004 * 119.82106 * 179.76663 * 24 23 22 43 43 H 1.08003 * 119.91141 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.08468 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 1.4464 2.6528 -0.6999 6 1 3.5465 1.4404 -0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 7 5.4874 -2.6374 -0.0993 12 6 6.0989 -2.1359 1.1401 13 6 7.6231 -2.2100 1.0170 14 8 8.0403 -1.4673 -0.1318 15 6 7.4642 -1.9293 -1.3565 16 6 5.9384 -1.8523 -1.2574 17 1 5.6336 -0.8132 -1.1336 18 6 5.3143 -2.4200 -2.5339 19 6 5.6491 -1.5239 -3.6983 20 8 6.2294 -0.4761 -3.5097 21 6 5.2719 -1.9207 -5.0644 22 6 4.6077 -3.1312 -5.2865 23 6 4.2533 -3.4937 -6.5689 24 6 4.5622 -2.6676 -7.6357 25 6 5.2243 -1.4708 -7.4245 26 6 5.5808 -1.0918 -6.1476 27 1 -0.4850 0.8399 0.0004 28 1 3.8746 -0.6798 -0.8911 29 1 3.8752 -0.6802 0.8889 30 1 3.7191 -3.1287 0.9232 31 1 3.6001 -3.1709 -0.8523 32 1 5.7967 -1.1012 1.3021 33 1 5.7714 -2.7474 1.9808 34 1 8.0815 -1.7863 1.9106 35 1 7.9294 -3.2505 0.9085 36 1 7.8076 -1.3024 -2.1795 37 1 7.7658 -2.9615 -1.5339 38 1 5.7099 -3.4188 -2.7185 39 1 4.2320 -2.4739 -2.4163 40 1 4.3691 -3.7785 -4.4555 41 1 3.7366 -4.4262 -6.7418 42 1 4.2853 -2.9588 -8.6382 43 1 5.4622 -0.8318 -8.2622 44 1 6.0978 -0.1578 -5.9846 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119256746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:08 Heat of formation + Delta-G solvation = -72.002055 kcal Electronic energy + Delta-G solvation = -25316.802221 eV Core-core repulsion = 21812.297876 eV Total energy + Delta-G solvation = -3504.504344 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.60772 -40.42843 -39.07276 -37.56018 -35.04046 -33.89175 -32.39173 -32.14305 -31.87217 -29.41816 -28.18565 -25.35280 -25.32668 -23.86749 -23.13204 -23.09047 -20.91218 -20.14206 -19.15435 -18.43646 -17.61825 -17.20382 -17.01367 -16.61264 -16.50245 -16.06862 -15.97270 -15.53896 -15.23907 -15.15231 -15.04614 -14.93116 -14.50442 -14.42073 -14.30360 -13.59745 -13.46788 -13.41965 -12.95869 -12.84590 -12.63249 -12.49568 -12.44206 -12.18688 -12.03588 -11.97318 -11.67179 -11.47321 -11.27786 -10.83922 -10.74763 -10.59776 -9.94107 -9.93442 -9.30304 -8.38622 -6.39880 -0.33236 0.43804 1.19322 1.23917 1.34005 1.40347 2.23252 2.62640 2.84462 2.86674 2.96700 3.23240 3.70371 3.78586 3.88874 4.00522 4.05171 4.10806 4.19485 4.26053 4.28801 4.33617 4.48892 4.50040 4.52854 4.57734 4.60243 4.67781 4.74736 4.80781 4.85325 4.90829 4.92909 5.07495 5.08800 5.29705 5.36581 5.38179 5.47244 5.50584 5.50941 5.93326 5.97043 6.00675 6.15799 6.23290 6.46486 6.68276 7.24783 8.77414 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.009822 B = 0.005667 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.141995 B = 4939.852716 C = 6654.726202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.020 3.980 3 Si 0.928 3.072 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.519 4.519 8 H 0.049 0.951 9 C -0.038 4.038 10 C 0.072 3.928 11 N -0.519 5.519 12 C 0.009 3.991 13 C 0.065 3.935 14 O -0.407 6.407 15 C 0.075 3.925 16 C 0.055 3.945 17 H 0.023 0.977 18 C -0.156 4.156 19 C 0.397 3.603 20 O -0.490 6.490 21 C -0.191 4.191 22 C -0.074 4.074 23 C -0.135 4.135 24 C -0.085 4.085 25 C -0.138 4.138 26 C -0.083 4.083 27 H 0.267 0.733 28 H 0.009 0.991 29 H 0.003 0.997 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.019 0.981 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.138 0.862 39 H 0.107 0.893 40 H 0.149 0.851 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.149 0.851 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.504 -10.002 -12.005 21.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.178 4.178 3 Si 0.754 3.246 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.196 1.196 7 C -0.557 4.557 8 H 0.068 0.932 9 C -0.077 4.077 10 C -0.055 4.055 11 N -0.243 5.243 12 C -0.119 4.119 13 C -0.011 4.011 14 O -0.325 6.325 15 C -0.002 4.002 16 C -0.054 4.054 17 H 0.041 0.959 18 C -0.193 4.193 19 C 0.278 3.722 20 O -0.368 6.368 21 C -0.192 4.192 22 C -0.092 4.092 23 C -0.153 4.153 24 C -0.103 4.103 25 C -0.156 4.156 26 C -0.102 4.102 27 H 0.076 0.924 28 H 0.027 0.973 29 H 0.021 0.979 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.037 0.963 33 H 0.122 0.878 34 H 0.133 0.867 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.156 0.844 39 H 0.125 0.875 40 H 0.166 0.834 41 H 0.175 0.825 42 H 0.176 0.824 43 H 0.167 0.833 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.954 -9.690 -11.939 21.449 hybrid contribution -0.832 2.024 0.412 2.227 sum 14.122 -7.665 -11.527 19.775 Atomic orbital electron populations 1.70003 1.07587 1.27903 1.52575 1.25705 0.95332 1.02216 0.94544 0.85992 0.79036 0.80545 0.79052 1.19109 1.20490 1.19616 1.21309 0.91221 0.93410 1.49793 0.93226 1.20065 0.95150 0.96983 0.95478 1.22062 0.85343 0.95481 1.02627 1.62695 1.07802 1.51342 1.02434 1.22921 0.96603 0.98770 0.93610 1.22858 0.91995 0.97498 0.88787 1.87944 1.69102 1.59233 1.16263 1.22757 0.90047 1.00639 0.86722 1.22033 0.96607 0.95426 0.91364 0.95897 1.22073 1.04013 1.01663 0.91545 1.22851 0.73847 0.85014 0.90498 1.90495 1.33907 1.24539 1.87849 1.20519 1.06058 0.98626 0.93956 1.21790 0.93977 0.94241 0.99210 1.21573 1.00334 1.01493 0.91854 1.21867 0.94571 0.93071 1.00786 1.21442 0.99586 0.98111 0.96474 1.21545 0.97009 0.98642 0.92977 0.92425 0.97307 0.97905 0.90723 0.89996 0.96309 0.87769 0.86682 0.90432 0.89169 0.90399 0.84384 0.87519 0.83352 0.82472 0.82404 0.83313 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.81 13.96 21.45 0.30 -58.51 16 2 C 0.02 1.19 5.47 84.65 0.46 1.66 16 3 Si 0.93 47.28 27.47 68.60 1.88 49.16 16 4 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.27 -13.97 6.54 99.48 0.65 -13.32 16 7 C -0.52 -29.58 9.66 25.60 0.25 -29.33 16 8 H 0.05 3.01 7.99 -2.91 -0.02 2.98 16 9 C -0.04 -1.82 3.24 29.85 0.10 -1.73 16 10 C 0.07 2.72 4.74 86.30 0.41 3.13 16 11 N -0.52 -16.77 4.75 -870.00 -4.13 -20.90 16 12 C 0.01 0.28 5.39 86.31 0.46 0.74 16 13 C 0.07 1.64 7.01 72.01 0.50 2.15 16 14 O -0.41 -12.92 10.83 -148.98 -1.61 -14.54 16 15 C 0.08 2.25 6.02 72.02 0.43 2.69 16 16 C 0.05 1.84 1.09 44.93 0.05 1.89 16 17 H 0.02 1.00 5.95 -2.39 -0.01 0.98 16 18 C -0.16 -4.45 3.61 29.85 0.11 -4.35 16 19 C 0.40 12.33 6.77 28.03 0.19 12.52 16 20 O -0.49 -18.48 14.29 -2.94 -0.04 -18.52 16 21 C -0.19 -4.97 5.87 -20.15 -0.12 -5.09 16 22 C -0.07 -1.50 9.45 22.58 0.21 -1.29 16 23 C -0.13 -2.13 10.03 22.23 0.22 -1.91 16 24 C -0.09 -1.26 10.04 22.35 0.22 -1.03 16 25 C -0.14 -2.49 10.03 22.22 0.22 -2.27 16 26 C -0.08 -2.05 9.60 22.58 0.22 -1.83 16 27 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 28 H 0.01 0.44 5.02 -2.38 -0.01 0.43 16 29 H 0.00 0.13 6.34 -2.38 -0.02 0.12 16 30 H 0.07 2.75 8.04 -2.39 -0.02 2.73 16 31 H 0.08 2.95 6.49 -2.39 -0.02 2.93 16 32 H 0.02 0.68 6.81 -2.39 -0.02 0.66 16 33 H 0.10 2.72 8.09 -2.39 -0.02 2.70 16 34 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.09 2.87 6.38 -2.38 -0.02 2.85 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.14 2.90 7.83 -2.38 -0.02 2.88 16 39 H 0.11 3.35 6.03 -2.39 -0.01 3.33 16 40 H 0.15 2.48 6.94 -2.91 -0.02 2.46 16 41 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 42 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 43 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 44 H 0.12 3.11 7.65 -2.91 -0.02 3.08 16 Total: -1.00 -73.77 346.52 1.29 -72.48 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.94 Total: 14.86 kcal Atomic # 6 Polarization: -27.99 SS G_CDS: 3.95 Total: -24.04 kcal Atomic # 7 Polarization: -75.58 SS G_CDS: -3.83 Total: -79.41 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -1.65 Total: -33.05 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.88 Total: 49.16 kcal Total: -73.77 1.29 -72.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119256746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.479 kcal (2) G-P(sol) polarization free energy of solvation -73.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds