Wall clock time and date at job start Tue Mar 31 2020 08:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47346 * 305.00026 * 10 9 7 12 12 N 1.46497 * 109.47195 * 64.99546 * 10 9 7 13 13 C 1.34774 * 120.00444 * 204.99889 * 12 10 9 14 14 O 1.21282 * 119.99907 * 0.02562 * 13 12 10 15 15 C 1.50696 * 120.00466 * 180.02562 * 13 12 10 16 16 H 1.09007 * 109.52511 * 59.87199 * 15 13 12 17 17 C 1.53175 * 109.52958 * 180.02562 * 15 13 12 18 18 C 1.53171 * 109.04066 * 176.88473 * 17 15 13 19 19 C 1.53090 * 109.16518 * 303.01976 * 18 17 15 20 20 O 1.42903 * 109.41509 * 57.60424 * 19 18 17 21 21 C 1.42902 * 114.09891 * 298.84757 * 20 19 18 22 22 C 1.50699 * 109.47337 * 184.99952 * 10 9 7 23 23 C 1.38232 * 119.99901 * 279.72380 * 22 10 9 24 24 C 1.38237 * 120.00227 * 179.80448 * 23 22 10 25 25 C 1.38239 * 119.99768 * 0.40665 * 24 23 22 26 26 C 1.38242 * 119.99786 * 359.85095 * 25 24 23 27 27 C 1.38233 * 120.00063 * 359.95930 * 26 25 24 28 28 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 30 30 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 31 31 H 0.97001 * 119.99762 * 25.00311 * 12 10 9 32 32 H 1.09006 * 109.53998 * 296.75472 * 17 15 13 33 33 H 1.09001 * 109.54131 * 56.92605 * 17 15 13 34 34 H 1.09007 * 109.52369 * 62.92781 * 18 17 15 35 35 H 1.09006 * 109.52320 * 183.05011 * 18 17 15 36 36 H 1.09000 * 109.48119 * 177.59490 * 19 18 17 37 37 H 1.09003 * 109.47975 * 297.62373 * 19 18 17 38 38 H 1.08999 * 109.47512 * 301.16917 * 21 20 19 39 39 H 1.09004 * 109.47405 * 181.14251 * 21 20 19 40 40 H 1.08003 * 120.00329 * 0.02562 * 23 22 10 41 41 H 1.08001 * 120.00485 * 180.23077 * 24 23 22 42 42 H 1.07993 * 120.00075 * 179.82746 * 25 24 23 43 43 H 1.07996 * 120.00086 * 179.97438 * 26 25 24 44 44 H 1.08002 * 120.00261 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5553 -0.8413 12 7 3.0062 -3.6540 1.2523 13 6 4.2308 -4.2147 1.3001 14 8 4.7030 -4.7256 0.3067 15 6 5.0135 -4.2068 2.5878 16 1 4.4513 -4.7334 3.3591 17 6 6.3615 -4.9014 2.3720 18 6 7.1790 -4.8186 3.6647 19 6 7.3398 -3.3495 4.0643 20 8 6.0495 -2.7552 4.2188 21 6 5.2580 -2.7613 3.0290 22 6 1.4957 -4.9637 -0.1233 23 6 0.8989 -5.5262 0.9895 24 6 0.2080 -6.7180 0.8752 25 6 0.1211 -7.3517 -0.3503 26 6 0.7224 -6.7919 -1.4621 27 6 1.4099 -5.5980 -1.3485 28 1 -0.4850 0.8401 0.0004 29 1 0.6239 -2.5567 0.8903 30 1 0.6246 -2.5571 -0.8897 31 1 2.6286 -3.2450 2.0467 32 1 6.1954 -5.9469 2.1119 33 1 6.9017 -4.4063 1.5650 34 1 6.6612 -5.3574 4.4583 35 1 8.1612 -5.2629 3.5036 36 1 7.8843 -3.2866 5.0065 37 1 7.8932 -2.8203 3.2885 38 1 5.7842 -2.2244 2.2398 39 1 4.3027 -2.2746 3.2255 40 1 0.9694 -5.0327 1.9476 41 1 -0.2614 -7.1556 1.7439 42 1 -0.4163 -8.2842 -0.4391 43 1 0.6549 -7.2871 -2.4194 44 1 1.8794 -5.1604 -2.2172 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153245915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:24 Heat of formation + Delta-G solvation = -80.113553 kcal Electronic energy + Delta-G solvation = -25144.446455 eV Core-core repulsion = 21639.590369 eV Total energy + Delta-G solvation = -3504.856085 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.17703 -39.05817 -38.05069 -35.26902 -33.52194 -32.80561 -31.84899 -30.62988 -30.34847 -28.76689 -25.37477 -24.80809 -24.08107 -22.31335 -21.97756 -21.09795 -19.88679 -19.56841 -17.21167 -16.67448 -16.25167 -16.20023 -15.97070 -15.38352 -15.01643 -14.77070 -14.55926 -14.39425 -13.84429 -13.62802 -13.46759 -13.04352 -12.95035 -12.69914 -12.52470 -12.41993 -12.12804 -11.61408 -11.57688 -11.16658 -11.14970 -11.00944 -10.89620 -10.75769 -10.60246 -10.48340 -10.41704 -9.80506 -9.65358 -9.35126 -9.23319 -8.56643 -8.48253 -8.44316 -8.19682 -6.11342 -4.14999 1.76574 1.78961 3.04008 3.24957 3.33814 3.37363 3.61734 3.89049 4.22866 4.38039 4.64974 4.79667 4.85020 4.91154 5.13349 5.23825 5.25458 5.25951 5.29799 5.34873 5.40262 5.53097 5.58541 5.70264 5.72989 5.80313 5.89459 5.91573 5.92899 6.10195 6.15778 6.26275 6.34311 6.42393 6.56113 6.83362 6.83922 6.88456 7.08987 7.10983 7.39116 7.47285 7.59913 7.85225 8.08814 8.23473 8.71943 8.91059 9.50377 10.99183 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.007858 B = 0.006670 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3562.301870 B = 4196.631318 C = 7147.707448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.183 3.817 11 H 0.086 0.914 12 N -0.699 5.699 13 C 0.517 3.483 14 O -0.547 6.547 15 C -0.142 4.142 16 H 0.101 0.899 17 C -0.101 4.101 18 C -0.155 4.155 19 C 0.056 3.944 20 O -0.378 6.378 21 C 0.070 3.930 22 C -0.071 4.071 23 C -0.108 4.108 24 C -0.125 4.125 25 C -0.135 4.135 26 C -0.123 4.123 27 C -0.108 4.108 28 H 0.261 0.739 29 H 0.025 0.975 30 H 0.034 0.966 31 H 0.401 0.599 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.707 -11.119 6.352 14.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.558 4.558 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.079 3.921 11 H 0.105 0.895 12 N -0.348 5.348 13 C 0.302 3.698 14 O -0.425 6.425 15 C -0.164 4.164 16 H 0.119 0.881 17 C -0.139 4.139 18 C -0.193 4.193 19 C -0.020 4.020 20 O -0.297 6.297 21 C -0.007 4.007 22 C -0.072 4.072 23 C -0.127 4.127 24 C -0.143 4.143 25 C -0.153 4.153 26 C -0.141 4.141 27 C -0.127 4.127 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.236 0.764 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.123 0.877 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.819 -11.265 5.803 14.890 hybrid contribution 0.164 0.986 0.070 1.002 sum 7.983 -10.279 5.873 14.279 Atomic orbital electron populations 1.69965 1.06026 1.26727 1.50243 1.24986 0.94788 0.99228 0.95100 0.86562 0.80170 0.83788 0.77674 1.19712 1.20994 1.20949 1.21154 0.93073 0.90336 1.51277 0.92353 1.19396 0.93225 0.90145 0.98613 1.20256 0.93405 0.91959 0.86456 0.89550 1.46029 1.16876 1.57553 1.14323 1.20281 0.81787 0.78178 0.89580 1.90655 1.69599 1.45737 1.36531 1.21989 0.97909 0.99566 0.96941 0.88074 1.21376 0.93786 1.01553 0.97156 1.22222 1.01011 0.97709 0.98355 1.22611 0.85245 0.92458 1.01719 1.87955 1.27440 1.80169 1.34099 1.22575 0.96729 0.93612 0.87770 1.20549 0.96838 0.96493 0.93334 1.20911 0.97660 0.95615 0.98485 1.21046 0.99853 0.96035 0.97365 1.20998 1.01064 1.00034 0.93230 1.21043 0.98546 0.96198 0.98286 1.21019 0.99143 0.95087 0.97442 0.92894 0.95700 0.94785 0.76446 0.90907 0.90954 0.91069 0.90722 0.88976 0.93100 0.92299 0.87655 0.86564 0.86727 0.86839 0.86613 0.86210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.31 13.29 55.43 0.74 -24.57 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -13.50 8.84 -34.44 -0.30 -13.80 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.55 4.50 -27.88 -0.13 0.43 16 10 C 0.18 3.67 2.12 -69.09 -0.15 3.53 16 11 H 0.09 1.90 7.44 -51.93 -0.39 1.52 16 12 N -0.70 -12.23 3.93 -54.94 -0.22 -12.45 16 13 C 0.52 8.86 7.11 -10.99 -0.08 8.78 16 14 O -0.55 -11.22 15.63 5.56 0.09 -11.13 16 15 C -0.14 -1.92 2.73 -91.64 -0.25 -2.17 16 16 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 17 C -0.10 -1.26 4.62 -26.55 -0.12 -1.38 16 18 C -0.16 -1.53 6.14 -26.60 -0.16 -1.69 16 19 C 0.06 0.59 6.84 37.20 0.25 0.84 16 20 O -0.38 -5.01 10.77 -35.23 -0.38 -5.39 16 21 C 0.07 0.95 6.01 37.21 0.22 1.17 16 22 C -0.07 -1.31 4.91 -104.63 -0.51 -1.82 16 23 C -0.11 -1.81 9.32 -39.58 -0.37 -2.18 16 24 C -0.12 -1.85 10.05 -39.58 -0.40 -2.24 16 25 C -0.14 -1.92 10.05 -39.58 -0.40 -2.32 16 26 C -0.12 -1.85 10.05 -39.58 -0.40 -2.24 16 27 C -0.11 -1.88 9.67 -39.58 -0.38 -2.27 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.40 6.43 8.09 -40.82 -0.33 6.10 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.98 8.02 -51.93 -0.42 0.57 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.11 1.40 7.66 -51.93 -0.40 1.00 16 40 H 0.12 1.81 7.71 -52.48 -0.40 1.40 16 41 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 44 H 0.12 2.00 8.04 -52.49 -0.42 1.58 16 LS Contribution 363.33 15.07 5.48 5.48 Total: -1.00 -30.73 363.33 -9.56 -40.29 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -6.97 Total: 7.79 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -3.27 Total: -15.81 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.52 Total: -37.02 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.29 Total: -16.52 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.73 -9.56 -40.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153245915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.826 kcal (2) G-P(sol) polarization free energy of solvation -30.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds