Wall clock time and date at job start Tue Mar 31 2020 08:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47346 * 305.00026 * 10 9 7 12 12 N 1.46497 * 109.47195 * 64.99546 * 10 9 7 13 13 C 1.34774 * 120.00444 * 204.99889 * 12 10 9 14 14 O 1.21282 * 119.99907 * 0.02562 * 13 12 10 15 15 C 1.50696 * 120.00466 * 180.02562 * 13 12 10 16 16 H 1.09007 * 109.52511 * 59.87199 * 15 13 12 17 17 C 1.53175 * 109.52958 * 180.02562 * 15 13 12 18 18 C 1.53171 * 109.04066 * 176.88473 * 17 15 13 19 19 C 1.53090 * 109.16518 * 303.01976 * 18 17 15 20 20 O 1.42903 * 109.41509 * 57.60424 * 19 18 17 21 21 C 1.42902 * 114.09891 * 298.84757 * 20 19 18 22 22 C 1.50699 * 109.47337 * 184.99952 * 10 9 7 23 23 C 1.38232 * 119.99901 * 279.72380 * 22 10 9 24 24 C 1.38237 * 120.00227 * 179.80448 * 23 22 10 25 25 C 1.38239 * 119.99768 * 0.40665 * 24 23 22 26 26 C 1.38242 * 119.99786 * 359.85095 * 25 24 23 27 27 C 1.38233 * 120.00063 * 359.95930 * 26 25 24 28 28 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 30 30 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 31 31 H 0.97001 * 119.99762 * 25.00311 * 12 10 9 32 32 H 1.09006 * 109.53998 * 296.75472 * 17 15 13 33 33 H 1.09001 * 109.54131 * 56.92605 * 17 15 13 34 34 H 1.09007 * 109.52369 * 62.92781 * 18 17 15 35 35 H 1.09006 * 109.52320 * 183.05011 * 18 17 15 36 36 H 1.09000 * 109.48119 * 177.59490 * 19 18 17 37 37 H 1.09003 * 109.47975 * 297.62373 * 19 18 17 38 38 H 1.08999 * 109.47512 * 301.16917 * 21 20 19 39 39 H 1.09004 * 109.47405 * 181.14251 * 21 20 19 40 40 H 1.08003 * 120.00329 * 0.02562 * 23 22 10 41 41 H 1.08001 * 120.00485 * 180.23077 * 24 23 22 42 42 H 1.07993 * 120.00075 * 179.82746 * 25 24 23 43 43 H 1.07996 * 120.00086 * 179.97438 * 26 25 24 44 44 H 1.08002 * 120.00261 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5553 -0.8413 12 7 3.0062 -3.6540 1.2523 13 6 4.2308 -4.2147 1.3001 14 8 4.7030 -4.7256 0.3067 15 6 5.0135 -4.2068 2.5878 16 1 4.4513 -4.7334 3.3591 17 6 6.3615 -4.9014 2.3720 18 6 7.1790 -4.8186 3.6647 19 6 7.3398 -3.3495 4.0643 20 8 6.0495 -2.7552 4.2188 21 6 5.2580 -2.7613 3.0290 22 6 1.4957 -4.9637 -0.1233 23 6 0.8989 -5.5262 0.9895 24 6 0.2080 -6.7180 0.8752 25 6 0.1211 -7.3517 -0.3503 26 6 0.7224 -6.7919 -1.4621 27 6 1.4099 -5.5980 -1.3485 28 1 -0.4850 0.8401 0.0004 29 1 0.6239 -2.5567 0.8903 30 1 0.6246 -2.5571 -0.8897 31 1 2.6286 -3.2450 2.0467 32 1 6.1954 -5.9469 2.1119 33 1 6.9017 -4.4063 1.5650 34 1 6.6612 -5.3574 4.4583 35 1 8.1612 -5.2629 3.5036 36 1 7.8843 -3.2866 5.0065 37 1 7.8932 -2.8203 3.2885 38 1 5.7842 -2.2244 2.2398 39 1 4.3027 -2.2746 3.2255 40 1 0.9694 -5.0327 1.9476 41 1 -0.2614 -7.1556 1.7439 42 1 -0.4163 -8.2842 -0.4391 43 1 0.6549 -7.2871 -2.4194 44 1 1.8794 -5.1604 -2.2172 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153245915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:23 Heat of formation + Delta-G solvation = -97.760105 kcal Electronic energy + Delta-G solvation = -25145.211667 eV Core-core repulsion = 21639.590369 eV Total energy + Delta-G solvation = -3505.621297 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.47405 -40.24793 -39.28088 -36.84452 -34.75151 -34.58779 -33.09289 -31.82616 -31.55281 -30.51088 -26.93252 -25.92847 -25.28442 -23.80316 -23.38667 -22.25683 -21.26166 -20.82774 -18.74145 -18.24798 -17.69121 -17.32990 -17.17663 -16.69531 -16.39813 -16.23405 -15.91017 -15.57908 -15.09054 -14.90269 -14.62774 -14.50453 -14.20166 -14.08188 -13.92260 -13.68377 -13.52450 -13.39247 -12.94003 -12.64030 -12.60282 -12.47242 -12.14986 -12.13719 -11.89253 -11.87812 -11.60080 -11.38870 -11.31191 -10.87804 -10.59449 -10.47764 -9.99486 -9.76415 -9.52859 -8.20845 -6.30803 0.50236 0.55055 1.37968 1.40887 1.51696 1.65171 2.28261 2.39309 2.87231 2.97934 3.13926 3.59949 3.77444 3.80186 3.97956 3.99859 4.02590 4.14378 4.20066 4.26994 4.31677 4.44882 4.46858 4.61276 4.64742 4.73306 4.75544 4.77847 4.82851 4.92935 5.03777 5.11536 5.11955 5.19254 5.26369 5.32814 5.42855 5.59813 5.60494 5.63482 5.77568 5.89487 6.14881 6.15238 6.19766 6.66677 6.82108 7.30986 7.38436 8.90110 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.007858 B = 0.006670 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3562.301870 B = 4196.631318 C = 7147.707448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.954 3.046 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.038 3.962 10 C 0.199 3.801 11 H 0.057 0.943 12 N -0.695 5.695 13 C 0.516 3.484 14 O -0.584 6.584 15 C -0.131 4.131 16 H 0.122 0.878 17 C -0.101 4.101 18 C -0.145 4.145 19 C 0.048 3.952 20 O -0.388 6.388 21 C 0.075 3.925 22 C -0.098 4.098 23 C -0.122 4.122 24 C -0.124 4.124 25 C -0.129 4.129 26 C -0.124 4.124 27 C -0.134 4.134 28 H 0.264 0.736 29 H 0.013 0.987 30 H 0.002 0.998 31 H 0.408 0.592 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.118 0.882 37 H 0.050 0.950 38 H 0.045 0.955 39 H 0.104 0.896 40 H 0.121 0.879 41 H 0.147 0.853 42 H 0.151 0.849 43 H 0.143 0.857 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.286 -12.462 7.976 16.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.073 0.927 9 C 0.000 4.000 10 C 0.094 3.906 11 H 0.075 0.925 12 N -0.344 5.344 13 C 0.303 3.697 14 O -0.464 6.464 15 C -0.153 4.153 16 H 0.139 0.861 17 C -0.139 4.139 18 C -0.183 4.183 19 C -0.028 4.028 20 O -0.307 6.307 21 C -0.002 4.002 22 C -0.099 4.099 23 C -0.140 4.140 24 C -0.142 4.142 25 C -0.147 4.147 26 C -0.142 4.142 27 C -0.152 4.152 28 H 0.073 0.927 29 H 0.031 0.969 30 H 0.021 0.979 31 H 0.244 0.756 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.136 0.864 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.122 0.878 40 H 0.139 0.861 41 H 0.165 0.835 42 H 0.169 0.831 43 H 0.161 0.839 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.408 -12.608 7.449 16.887 hybrid contribution -0.028 1.331 -0.467 1.411 sum 8.380 -11.277 6.981 15.689 Atomic orbital electron populations 1.70074 1.07456 1.27644 1.51364 1.25757 0.95537 1.02585 0.94812 0.85567 0.79010 0.79713 0.77777 1.19225 1.20901 1.20066 1.21409 0.92994 0.91470 1.50607 0.92742 1.19134 0.93279 0.91146 0.96401 1.19729 0.92193 0.92013 0.86650 0.92476 1.45936 1.17131 1.57689 1.13624 1.20926 0.81304 0.76986 0.90501 1.90634 1.70239 1.47278 1.38247 1.21968 0.98134 1.00162 0.94993 0.86053 1.21385 0.93345 1.00787 0.98341 1.22182 1.01712 0.97600 0.96782 1.22883 0.84160 0.92579 1.03215 1.87946 1.28581 1.80622 1.33522 1.22448 0.96807 0.93226 0.87763 1.20448 0.98462 0.96263 0.94759 1.21079 0.98144 0.96719 0.98062 1.21448 0.98792 0.95001 0.98955 1.21474 0.99914 1.00929 0.92396 1.21386 0.97499 0.95130 1.00142 1.21173 1.00493 0.96622 0.96955 0.92739 0.96885 0.97934 0.75599 0.91345 0.92627 0.90082 0.88530 0.86410 0.93115 0.93665 0.87760 0.86056 0.83542 0.83104 0.83897 0.87044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.75 13.29 21.45 0.28 -53.47 16 2 C 0.01 0.65 5.46 84.66 0.46 1.11 16 3 Si 0.95 43.21 29.54 68.60 2.03 45.24 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.53 -28.27 8.84 25.60 0.23 -28.05 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.04 1.88 4.50 29.85 0.13 2.02 16 10 C 0.20 8.44 2.12 44.24 0.09 8.53 16 11 H 0.06 2.72 7.44 -2.39 -0.02 2.70 16 12 N -0.69 -25.17 3.93 -446.11 -1.75 -26.92 16 13 C 0.52 18.11 7.11 87.66 0.62 18.73 16 14 O -0.58 -24.81 15.63 -3.03 -0.05 -24.86 16 15 C -0.13 -3.46 2.73 -11.45 -0.03 -3.49 16 16 H 0.12 2.74 8.14 -2.38 -0.02 2.72 16 17 C -0.10 -2.42 4.62 30.71 0.14 -2.28 16 18 C -0.15 -2.49 6.14 30.68 0.19 -2.30 16 19 C 0.05 0.88 6.84 72.01 0.49 1.38 16 20 O -0.39 -9.62 10.77 -148.98 -1.60 -11.23 16 21 C 0.08 1.99 6.01 72.01 0.43 2.43 16 22 C -0.10 -3.74 4.91 -19.87 -0.10 -3.84 16 23 C -0.12 -4.03 9.32 22.27 0.21 -3.82 16 24 C -0.12 -3.37 10.05 22.27 0.22 -3.15 16 25 C -0.13 -3.29 10.05 22.27 0.22 -3.07 16 26 C -0.12 -3.55 10.05 22.27 0.22 -3.33 16 27 C -0.13 -4.79 9.67 22.27 0.22 -4.57 16 28 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.41 13.44 8.09 -92.71 -0.75 12.69 16 32 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.05 1.52 8.02 -2.39 -0.02 1.50 16 34 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.10 2.75 7.66 -2.39 -0.02 2.73 16 40 H 0.12 3.75 7.71 -2.91 -0.02 3.73 16 41 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 42 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 43 H 0.14 3.23 8.06 -2.91 -0.02 3.20 16 44 H 0.11 4.00 8.04 -2.91 -0.02 3.97 16 Total: -1.00 -68.09 363.33 2.90 -65.19 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.23 Total: 29.76 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 3.76 Total: -23.71 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -1.47 Total: -80.39 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -1.65 Total: -36.09 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -68.09 2.90 -65.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153245915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.571 kcal (2) G-P(sol) polarization free energy of solvation -68.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds