Wall clock time and date at job start Tue Mar 31 2020 08:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86804 * 119.99985 * 2 1 4 4 H 1.48499 * 109.47299 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47281 * 300.00109 * 3 2 1 6 6 H 1.48499 * 109.46824 * 60.00325 * 3 2 1 7 7 C 1.40124 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00407 * 180.02562 * 7 2 1 9 9 C 1.46174 * 119.99800 * 359.97438 * 7 2 1 10 10 O 1.21738 * 119.99751 * 0.02562 * 9 7 2 11 11 N 1.34776 * 119.99752 * 180.02562 * 9 7 2 12 12 C 1.39542 * 119.99797 * 184.61117 * 11 9 7 13 13 C 1.39046 * 120.07974 * 324.86909 * 12 11 9 14 14 C 1.38035 * 119.91353 * 180.02562 * 13 12 11 15 15 C 1.38356 * 120.08416 * 359.74244 * 14 13 12 16 16 C 1.38305 * 120.16272 * 0.50936 * 15 14 13 17 17 C 1.50703 * 119.95387 * 179.76673 * 16 15 14 18 18 O 1.42898 * 109.47041 * 269.72221 * 17 16 15 19 19 C 1.42907 * 114.00011 * 180.02562 * 18 17 16 20 20 C 1.53001 * 109.47234 * 270.00351 * 19 18 17 21 21 C 1.52998 * 109.47088 * 180.02562 * 20 19 18 22 22 C 1.52994 * 109.47139 * 59.99973 * 21 20 19 23 23 C 1.53001 * 109.47153 * 299.99987 * 22 21 20 24 24 C 1.52994 * 109.47055 * 150.00286 * 19 18 17 25 25 C 1.38083 * 120.08674 * 359.49167 * 16 15 14 26 26 H 0.97000 * 119.99697 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00202 * 4.61018 * 11 9 7 28 28 H 1.07998 * 120.04595 * 0.03798 * 13 12 11 29 29 H 1.08004 * 119.95758 * 179.97438 * 14 13 12 30 30 H 1.07997 * 119.91755 * 180.25342 * 15 14 13 31 31 H 1.08998 * 109.47144 * 149.72766 * 17 16 15 32 32 H 1.08994 * 109.47348 * 29.72573 * 17 16 15 33 33 H 1.09005 * 109.46939 * 30.00414 * 19 18 17 34 34 H 1.09005 * 109.47209 * 299.99898 * 20 19 18 35 35 H 1.09002 * 109.47245 * 59.99961 * 20 19 18 36 36 H 1.09005 * 109.47001 * 300.00012 * 21 20 19 37 37 H 1.09004 * 109.47143 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.46933 * 180.02562 * 22 21 20 39 39 H 1.08994 * 109.47599 * 60.00208 * 22 21 20 40 40 H 1.08999 * 109.47239 * 299.99655 * 23 22 21 41 41 H 1.09002 * 109.47090 * 180.02562 * 23 22 21 42 42 H 1.09004 * 109.47185 * 300.00202 * 24 19 18 43 43 H 1.09000 * 109.47495 * 59.99927 * 24 19 18 44 44 H 1.08004 * 120.04125 * 180.22905 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.7004 1.3465 0.0006 5 1 1.8817 2.3965 -1.2124 6 1 1.8817 2.3964 1.2126 7 6 2.0071 -1.2135 -0.0005 8 1 3.0871 -1.2135 -0.0001 9 6 1.2762 -2.4794 -0.0005 10 8 0.0588 -2.4793 -0.0005 11 7 1.9501 -3.6465 -0.0005 12 6 1.2558 -4.8531 -0.0977 13 6 0.0101 -4.9907 0.5044 14 6 -0.6735 -6.1859 0.4065 15 6 -0.1230 -7.2444 -0.2940 16 6 1.1182 -7.1129 -0.8897 17 6 1.7158 -8.2706 -1.6472 18 8 2.4988 -9.0687 -0.7573 19 6 3.1139 -10.1990 -1.3788 20 6 2.1721 -11.4019 -1.2960 21 6 2.8309 -12.6122 -1.9609 22 6 4.1407 -12.9394 -1.2410 23 6 5.0825 -11.7365 -1.3238 24 6 4.4239 -10.5264 -0.6595 25 6 1.8081 -5.9204 -0.7962 26 1 -0.4850 0.8401 -0.0004 27 1 2.9177 -3.6479 0.0670 28 1 -0.4223 -4.1635 1.0477 29 1 -1.6410 -6.2937 0.8743 30 1 -0.6620 -8.1770 -0.3723 31 1 2.3499 -7.8918 -2.4487 32 1 0.9167 -8.8779 -2.0722 33 1 3.3208 -9.9708 -2.4244 34 1 1.9652 -11.6301 -0.2504 35 1 1.2388 -11.1687 -1.8085 36 1 3.0382 -12.3843 -3.0065 37 1 2.1598 -13.4691 -1.9023 38 1 4.6102 -13.8014 -1.7150 39 1 3.9335 -13.1673 -0.1954 40 1 5.2898 -11.5086 -2.3693 41 1 6.0158 -11.9698 -0.8113 42 1 5.0949 -9.6694 -0.7185 43 1 4.2171 -10.7546 0.3861 44 1 2.7757 -5.8173 -1.2649 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153673476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:45:16 Heat of formation + Delta-G solvation = -104.339234 kcal Electronic energy + Delta-G solvation = -23782.152357 eV Core-core repulsion = 20276.245767 eV Total energy + Delta-G solvation = -3505.906590 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.94614 -40.08433 -38.87276 -37.26681 -35.33493 -34.53135 -32.76250 -31.67539 -30.78027 -30.31093 -28.24794 -26.84881 -23.72477 -23.45805 -23.12042 -22.95591 -21.20023 -20.65613 -19.48248 -17.92246 -17.71588 -17.58067 -16.92393 -16.63532 -16.21469 -15.94106 -15.52729 -15.38984 -14.90602 -14.88465 -14.57308 -14.42425 -14.22433 -13.99546 -13.52294 -13.28970 -13.20045 -13.08127 -12.96539 -12.81468 -12.74948 -12.42033 -12.06997 -12.02453 -11.99631 -11.91637 -11.44619 -11.33413 -11.20816 -11.08132 -10.80681 -10.30045 -9.95189 -9.67381 -8.80382 -8.38144 -6.96248 0.41722 0.52654 1.38506 1.39074 1.57334 2.19991 2.33681 2.65579 2.89449 3.14876 3.54923 3.76375 3.83172 3.95035 3.99576 4.11596 4.22839 4.29794 4.32822 4.39114 4.41991 4.49870 4.55848 4.59810 4.61272 4.69684 4.72204 4.91660 4.97952 5.08719 5.10597 5.15564 5.24279 5.25326 5.26928 5.33847 5.42067 5.53322 5.53729 5.56445 5.66459 5.79100 5.93254 6.14908 6.35933 6.41294 6.76362 7.32303 8.33700 8.55491 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.029326 B = 0.002459 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.545807 B =11384.646655 C =12130.855458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.028 3.972 3 Si 1.003 2.997 4 H -0.246 1.246 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.565 4.565 8 H 0.092 0.908 9 C 0.529 3.471 10 O -0.607 6.607 11 N -0.695 5.695 12 C 0.153 3.847 13 C -0.153 4.153 14 C -0.107 4.107 15 C -0.132 4.132 16 C -0.075 4.075 17 C 0.114 3.886 18 O -0.396 6.396 19 C 0.084 3.916 20 C -0.139 4.139 21 C -0.115 4.115 22 C -0.122 4.122 23 C -0.113 4.113 24 C -0.117 4.117 25 C -0.149 4.149 26 H 0.278 0.722 27 H 0.406 0.594 28 H 0.100 0.900 29 H 0.138 0.862 30 H 0.148 0.852 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.917 -23.362 -4.647 25.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.188 4.188 3 Si 0.822 3.178 4 H -0.169 1.169 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.601 4.601 8 H 0.110 0.890 9 C 0.336 3.664 10 O -0.492 6.492 11 N -0.339 5.339 12 C 0.056 3.944 13 C -0.174 4.174 14 C -0.125 4.125 15 C -0.151 4.151 16 C -0.076 4.076 17 C 0.038 3.962 18 O -0.316 6.316 19 C 0.027 3.973 20 C -0.177 4.177 21 C -0.152 4.152 22 C -0.160 4.160 23 C -0.150 4.150 24 C -0.155 4.155 25 C -0.170 4.170 26 H 0.088 0.912 27 H 0.241 0.759 28 H 0.118 0.882 29 H 0.156 0.844 30 H 0.165 0.835 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.942 -23.143 -4.462 24.871 hybrid contribution 0.291 1.145 0.077 1.184 sum 8.233 -21.998 -4.385 23.894 Atomic orbital electron populations 1.70156 1.09583 1.29324 1.35184 1.27038 0.95603 1.05077 0.91100 0.84891 0.79330 0.74968 0.78641 1.16874 1.19205 1.19233 1.21424 0.94980 0.89528 1.54128 0.88960 1.18766 0.87221 0.83784 0.76642 1.90573 1.15605 1.87133 1.55922 1.43672 1.10145 1.03864 1.76249 1.18197 0.93856 0.86840 0.95528 1.21379 0.96419 0.98169 1.01469 1.21205 1.00064 0.92057 0.99189 1.21150 0.95840 0.99127 0.98941 1.19567 0.94694 0.93801 0.99511 1.21287 0.94686 0.89422 0.90784 1.88000 1.66737 1.39710 1.37130 1.22291 0.92934 0.85268 0.96851 1.22023 0.98778 0.95311 1.01613 1.21497 0.96929 0.97112 0.99678 1.21585 0.95515 0.97950 1.00901 1.21490 0.98563 0.93783 1.01205 1.21593 0.94983 0.98855 1.00048 1.20930 1.01715 0.93215 1.01117 0.91213 0.75877 0.88167 0.84419 0.83474 0.91647 0.90689 0.91415 0.92139 0.91673 0.91325 0.90938 0.90605 0.92212 0.91246 0.90716 0.91963 0.92164 0.84822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -49.18 11.82 21.85 0.26 -48.92 16 2 C 0.03 1.54 5.50 85.33 0.47 2.01 16 3 Si 1.00 40.27 29.56 68.60 2.03 42.30 16 4 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 5 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 6 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 7 C -0.56 -31.77 9.54 24.79 0.24 -31.53 16 8 H 0.09 4.62 7.85 -2.91 -0.02 4.60 16 9 C 0.53 31.03 7.58 86.30 0.65 31.68 16 10 O -0.61 -40.39 12.44 -4.47 -0.06 -40.44 16 11 N -0.69 -33.23 5.32 -307.54 -1.63 -34.86 16 12 C 0.15 6.81 6.30 38.29 0.24 7.05 16 13 C -0.15 -7.07 8.69 22.42 0.19 -6.87 16 14 C -0.11 -3.88 10.04 22.25 0.22 -3.66 16 15 C -0.13 -4.06 9.70 22.31 0.22 -3.84 16 16 C -0.07 -2.33 5.51 -19.88 -0.11 -2.44 16 17 C 0.11 2.69 5.87 71.24 0.42 3.11 16 18 O -0.40 -9.85 9.97 -148.98 -1.49 -11.33 16 19 C 0.08 1.53 2.61 30.59 0.08 1.61 16 20 C -0.14 -2.17 5.54 30.59 0.17 -2.00 16 21 C -0.11 -1.31 5.92 30.59 0.18 -1.13 16 22 C -0.12 -1.32 5.92 30.59 0.18 -1.14 16 23 C -0.11 -1.35 5.92 30.58 0.18 -1.17 16 24 C -0.12 -1.97 5.57 30.57 0.17 -1.80 16 25 C -0.15 -5.36 9.62 22.42 0.22 -5.14 16 26 H 0.28 15.11 8.29 -92.71 -0.77 14.34 16 27 H 0.41 16.50 8.80 -92.71 -0.82 15.68 16 28 H 0.10 5.44 6.22 -2.91 -0.02 5.43 16 29 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 30 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 31 H 0.07 1.39 8.03 -2.39 -0.02 1.37 16 32 H 0.08 1.45 7.81 -2.39 -0.02 1.43 16 33 H 0.07 1.10 7.79 -2.38 -0.02 1.08 16 34 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.06 0.98 7.87 -2.39 -0.02 0.96 16 36 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.13 4.23 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -74.95 360.37 3.01 -71.94 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: 0.18 Total: 36.59 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 3.72 Total: -15.27 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -1.38 Total: -83.78 kcal Atomic # 8 Polarization: -50.23 SS G_CDS: -1.54 Total: -51.78 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Total: -74.95 3.01 -71.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153673476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.400 kcal (2) G-P(sol) polarization free energy of solvation -74.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds