Wall clock time and date at job start Tue Mar 31 2020 08:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00080 * 2 1 4 4 H 1.48500 * 109.47036 * 270.00101 * 3 2 1 5 5 H 1.48493 * 109.47345 * 30.00753 * 3 2 1 6 6 H 1.48508 * 109.46936 * 150.00255 * 3 2 1 7 7 C 1.37878 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99754 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99879 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47155 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47243 * 180.02562 * 10 9 7 12 12 N 1.46495 * 109.47184 * 179.97438 * 11 10 9 13 13 C 1.34782 * 120.00321 * 179.97438 * 12 11 10 14 14 O 1.21580 * 119.99603 * 359.97438 * 13 12 11 15 15 C 1.47605 * 120.00125 * 180.02562 * 13 12 11 16 16 C 1.39730 * 120.08328 * 180.02562 * 15 13 12 17 17 C 1.37709 * 119.90621 * 180.02562 * 16 15 13 18 18 C 1.38990 * 120.08910 * 0.02562 * 17 16 15 19 19 O 1.35715 * 119.91102 * 179.97438 * 18 17 16 20 20 C 1.42901 * 116.99916 * 179.97438 * 19 18 17 21 21 C 1.52998 * 109.47046 * 180.02562 * 20 19 18 22 22 C 1.52999 * 117.49602 * 243.74591 * 21 20 19 23 23 C 1.52993 * 117.49920 * 175.08804 * 21 20 19 24 24 C 1.38998 * 120.17645 * 0.23286 * 18 17 16 25 25 C 1.37705 * 120.08872 * 359.48629 * 24 18 17 26 26 H 0.97005 * 119.99930 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47227 * 59.99736 * 9 7 2 28 28 H 1.08993 * 109.47599 * 299.99534 * 9 7 2 29 29 H 1.09001 * 109.47066 * 59.99886 * 10 9 7 30 30 H 1.09005 * 109.47028 * 300.00071 * 10 9 7 31 31 H 1.09001 * 109.47327 * 59.99869 * 11 10 9 32 32 H 1.09005 * 109.47022 * 299.99897 * 11 10 9 33 33 H 0.97005 * 119.99829 * 0.02562 * 12 11 10 34 34 H 1.07996 * 120.04876 * 359.97438 * 16 15 13 35 35 H 1.08002 * 119.95427 * 179.97438 * 17 16 15 36 36 H 1.08999 * 109.47144 * 300.00258 * 20 19 18 37 37 H 1.08998 * 109.47043 * 59.99856 * 20 19 18 38 38 H 1.08999 * 115.55166 * 29.41592 * 21 20 19 39 39 H 1.08999 * 117.49990 * 0.02562 * 22 21 20 40 40 H 1.09009 * 117.49649 * 145.01662 * 22 21 20 41 41 H 1.08997 * 117.50294 * 214.97692 * 23 21 20 42 42 H 1.09001 * 117.49927 * 0.02562 * 23 21 20 43 43 H 1.08000 * 119.95504 * 179.74368 * 24 18 17 44 44 H 1.07996 * 120.04406 * 180.23304 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5514 -2.6367 -0.0009 12 7 6.0397 -4.0179 -0.0002 13 6 7.3648 -4.2643 -0.0006 14 8 8.1549 -3.3402 -0.0019 15 6 7.8567 -5.6560 -0.0004 16 6 9.2301 -5.9134 -0.0002 17 6 9.6850 -7.2132 -0.0006 18 6 8.7802 -8.2681 -0.0017 19 8 9.2325 -9.5477 -0.0026 20 6 8.2482 -10.5837 -0.0031 21 6 8.9428 -11.9470 -0.0034 22 6 8.7287 -12.8485 -1.2209 23 6 8.0587 -13.1902 0.1122 24 6 7.4132 -8.0162 -0.0073 25 6 6.9502 -6.7193 -0.0011 26 1 -0.4850 0.8401 0.0004 27 1 3.8751 -0.6805 0.8888 28 1 3.8745 -0.6802 -0.8911 29 1 3.6577 -3.1507 -0.8907 30 1 3.6584 -3.1503 0.8893 31 1 5.9148 -2.1228 0.8890 32 1 5.9148 -2.1230 -0.8910 33 1 5.4093 -4.7552 -0.0002 34 1 9.9338 -5.0942 -0.0006 35 1 10.7464 -7.4130 -0.0009 36 1 7.6256 -10.4938 0.8870 37 1 7.6253 -10.4926 -0.8929 38 1 9.9194 -11.9772 0.4797 39 1 8.0935 -12.4702 -2.0218 40 1 9.5645 -13.4721 -1.5386 41 1 8.4537 -14.0386 0.6711 42 1 6.9822 -13.0370 0.1881 43 1 6.7133 -8.8387 -0.0123 44 1 5.8880 -6.5244 -0.0016 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171498911.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:37:56 Heat of formation + Delta-G solvation = -38.859018 kcal Electronic energy + Delta-G solvation = -22755.643584 eV Core-core repulsion = 19252.576429 eV Total energy + Delta-G solvation = -3503.067155 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.73539 -39.60802 -38.04062 -36.86852 -35.54097 -33.39603 -31.85894 -31.21476 -30.49345 -28.20422 -27.02435 -23.90114 -23.28518 -22.96598 -22.36501 -21.02605 -20.76782 -20.01286 -18.76013 -17.64718 -16.90651 -16.71723 -16.34513 -15.73390 -15.39469 -15.27549 -15.09761 -14.61509 -14.18036 -14.07590 -13.97577 -13.72848 -13.37751 -13.09250 -12.72551 -12.64908 -12.15154 -12.05442 -11.94724 -11.91177 -11.60544 -11.23085 -11.07645 -11.01492 -10.89935 -10.54108 -10.24044 -9.99114 -9.79685 -9.60767 -9.40107 -9.23695 -8.93273 -8.56263 -8.51721 -6.07092 -4.05826 0.68551 1.01512 2.56535 2.79820 3.22088 3.30410 3.31415 3.38775 3.43086 3.69006 4.10882 4.25973 4.36284 4.38455 4.43964 4.50246 4.64229 4.71619 4.75628 4.94489 4.95927 5.07154 5.10721 5.27091 5.29748 5.31356 5.51742 5.52576 5.58182 5.64432 5.65116 5.81733 5.92202 6.00828 6.11612 6.31662 6.36030 6.43586 6.68924 6.78028 6.96316 7.21898 7.35453 7.61762 7.75809 8.30596 8.49441 8.96548 9.55201 11.06083 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.024786 B = 0.002021 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.402288 B =13848.465527 C =14875.414885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.114 3.886 12 N -0.722 5.722 13 C 0.556 3.444 14 O -0.544 6.544 15 C -0.170 4.170 16 C -0.020 4.020 17 C -0.161 4.161 18 C 0.153 3.847 19 O -0.309 6.309 20 C 0.089 3.911 21 C -0.159 4.159 22 C -0.176 4.176 23 C -0.169 4.169 24 C -0.218 4.218 25 C -0.043 4.043 26 H 0.263 0.737 27 H 0.019 0.981 28 H 0.015 0.985 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.398 0.602 34 H 0.144 0.856 35 H 0.137 0.863 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.117 0.883 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.133 0.867 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.900 -26.072 -0.258 32.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C -0.009 4.009 12 N -0.373 5.373 13 C 0.343 3.657 14 O -0.423 6.423 15 C -0.173 4.173 16 C -0.039 4.039 17 C -0.179 4.179 18 C 0.107 3.893 19 O -0.222 6.222 20 C 0.014 3.986 21 C -0.177 4.177 22 C -0.213 4.213 23 C -0.206 4.206 24 C -0.236 4.236 25 C -0.062 4.062 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.233 0.767 34 H 0.162 0.838 35 H 0.155 0.845 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.135 0.865 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.151 0.849 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 19.475 -25.345 -0.257 31.964 hybrid contribution -0.332 0.466 -0.020 0.573 sum 19.142 -24.879 -0.277 31.393 Atomic orbital electron populations 1.69912 1.06314 1.26960 1.50988 1.25029 0.94756 0.99252 0.94456 0.86772 0.80416 0.83504 0.78597 1.20245 1.21359 1.18878 1.21093 0.89306 0.94504 1.51125 0.91019 1.19505 0.97270 0.91444 0.96714 1.21716 0.90612 1.01119 1.01733 1.21681 0.96135 0.80939 1.02108 1.46088 1.06500 1.10093 1.74602 1.18161 0.82603 0.88334 0.76595 1.90767 1.55421 1.45717 1.50424 1.19945 0.94444 0.93092 1.09820 1.21102 0.94580 0.96130 0.92090 1.20403 0.99748 0.90163 1.07632 1.19239 0.92430 0.83936 0.93735 1.86016 1.36009 1.12304 1.87906 1.22376 0.90005 0.84467 1.01790 1.22103 1.01875 0.89489 1.04237 1.23134 1.03485 1.03014 0.91657 1.23019 0.99091 0.97838 1.00665 1.21166 0.94225 0.98094 1.10158 1.21144 0.99522 0.91497 0.94057 0.92697 0.96263 0.96695 0.92101 0.92078 0.91608 0.91611 0.76715 0.83846 0.84498 0.91200 0.91497 0.86487 0.88409 0.88315 0.88050 0.88356 0.84919 0.85059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -14.68 9.66 -34.44 -0.33 -15.01 16 8 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 9 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 10 C -0.11 -2.11 5.27 -26.73 -0.14 -2.25 16 11 C 0.11 1.90 5.67 -4.05 -0.02 1.88 16 12 N -0.72 -10.17 5.51 -61.33 -0.34 -10.51 16 13 C 0.56 8.38 7.76 -12.44 -0.10 8.29 16 14 O -0.54 -10.14 16.34 5.30 0.09 -10.05 16 15 C -0.17 -2.05 5.87 -104.96 -0.62 -2.67 16 16 C -0.02 -0.22 9.58 -39.22 -0.38 -0.60 16 17 C -0.16 -1.57 9.97 -39.50 -0.39 -1.96 16 18 C 0.15 1.46 6.70 -39.02 -0.26 1.20 16 19 O -0.31 -2.76 10.12 -18.85 -0.19 -2.95 16 20 C 0.09 0.56 5.02 37.16 0.19 0.74 16 21 C -0.16 -0.87 6.05 -90.62 -0.55 -1.42 16 22 C -0.18 -0.82 10.18 -26.70 -0.27 -1.09 16 23 C -0.17 -0.70 10.25 -26.70 -0.27 -0.97 16 24 C -0.22 -1.90 9.01 -39.49 -0.36 -2.26 16 25 C -0.04 -0.42 9.53 -39.22 -0.37 -0.79 16 26 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 27 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 28 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.40 4.48 6.49 -40.82 -0.27 4.21 16 34 H 0.14 1.57 7.64 -52.49 -0.40 1.17 16 35 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.07 0.38 7.66 -51.93 -0.40 -0.02 16 37 H 0.07 0.37 7.37 -51.93 -0.38 -0.02 16 38 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.10 0.43 8.03 -51.93 -0.42 0.01 16 40 H 0.10 0.40 8.14 -51.92 -0.42 -0.02 16 41 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.13 0.85 6.28 -52.49 -0.33 0.52 16 44 H 0.13 1.01 6.39 -52.49 -0.34 0.67 16 LS Contribution 368.34 15.07 5.55 5.55 Total: -1.00 -33.55 368.34 -9.56 -43.11 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.69 Total: 0.16 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -4.09 Total: -15.47 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.44 Total: -37.43 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.10 Total: -13.01 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.55 -9.56 -43.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171498911.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.251 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds