Wall clock time and date at job start Tue Mar 31 2020 08:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31425 * 1 3 3 Si 1.86807 * 119.99615 * 2 1 4 4 H 1.48503 * 109.46654 * 239.99557 * 3 2 1 5 5 H 1.48500 * 109.47281 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47033 * 119.99574 * 3 2 1 7 7 C 1.38888 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99839 * 188.82126 * 7 2 1 9 9 N 1.37134 * 120.00227 * 8.83398 * 7 2 1 10 10 C 1.34780 * 119.99846 * 235.98094 * 9 7 2 11 11 O 1.21282 * 119.99966 * 185.47304 * 10 9 7 12 12 C 1.50694 * 120.00134 * 5.46571 * 10 9 7 13 13 C 1.52994 * 109.47508 * 174.85605 * 12 10 9 14 14 C 1.53000 * 109.47552 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.48839 * 305.03005 * 14 13 12 16 16 C 1.53093 * 109.48361 * 185.00253 * 14 13 12 17 17 C 1.53176 * 109.21666 * 182.43954 * 16 14 13 18 18 C 1.53179 * 109.03498 * 56.94811 * 17 16 14 19 19 C 1.53093 * 109.16357 * 303.01826 * 18 17 16 20 20 O 1.42905 * 109.41209 * 57.61160 * 19 18 17 21 21 C 1.39784 * 120.00300 * 55.96880 * 9 7 2 22 22 C 1.38962 * 120.07862 * 174.45435 * 21 9 7 23 23 C 1.38088 * 119.92197 * 179.75090 * 22 21 9 24 24 C 1.38310 * 120.07388 * 0.52225 * 23 22 21 25 25 C 1.38305 * 120.16060 * 359.73333 * 24 23 22 26 26 C 1.38087 * 120.07413 * 0.02562 * 25 24 23 27 27 H 0.97003 * 120.00192 * 5.00030 * 1 2 3 28 28 H 1.09009 * 109.47031 * 54.85916 * 12 10 9 29 29 H 1.08997 * 109.47586 * 294.86186 * 12 10 9 30 30 H 1.09007 * 109.47166 * 60.00402 * 13 12 10 31 31 H 1.08997 * 109.47578 * 300.00483 * 13 12 10 32 32 H 1.08996 * 109.52209 * 62.50132 * 16 14 13 33 33 H 1.09002 * 109.52230 * 302.37719 * 16 14 13 34 34 H 1.09006 * 109.54275 * 176.81551 * 17 16 14 35 35 H 1.09001 * 109.54066 * 297.08119 * 17 16 14 36 36 H 1.08995 * 109.52404 * 62.92779 * 18 17 16 37 37 H 1.09001 * 109.51997 * 183.04783 * 18 17 16 38 38 H 1.09001 * 109.47783 * 177.59257 * 19 18 17 39 39 H 1.08995 * 109.48300 * 297.61828 * 19 18 17 40 40 H 1.08002 * 120.03646 * 359.97438 * 22 21 9 41 41 H 1.07994 * 119.96280 * 180.25248 * 23 22 21 42 42 H 1.08005 * 119.91824 * 179.74628 * 24 23 22 43 43 H 1.08001 * 119.96512 * 179.97438 * 25 24 23 44 44 H 1.08004 * 120.03559 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2482 1.6179 0.0000 4 1 3.1020 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6966 1.2125 7 6 2.0087 -1.2028 0.0005 8 1 3.0792 -1.2082 0.1440 9 7 1.3353 -2.3835 -0.1813 10 6 1.4380 -3.3659 0.7356 11 8 0.9243 -4.4449 0.5285 12 6 2.1911 -3.1239 2.0182 13 6 2.0488 -4.3433 2.9312 14 6 2.8130 -4.0972 4.2337 15 1 3.8481 -3.8432 4.0056 16 6 2.7756 -5.3627 5.0945 17 6 3.4895 -5.0907 6.4221 18 6 2.8218 -3.8977 7.1131 19 6 2.8588 -2.6884 6.1751 20 8 2.2052 -3.0189 4.9480 21 6 0.5423 -2.5680 -1.3175 22 6 -0.0479 -3.8021 -1.5620 23 6 -0.8349 -3.9794 -2.6827 24 6 -1.0273 -2.9334 -3.5670 25 6 -0.4372 -1.7053 -3.3297 26 6 0.3470 -1.5196 -2.2084 27 1 -0.4850 0.8369 -0.0732 28 1 1.7832 -2.2456 2.5189 29 1 3.2450 -2.9581 1.7951 30 1 2.4567 -5.2215 2.4307 31 1 0.9949 -4.5091 3.1545 32 1 3.2789 -6.1749 4.5700 33 1 1.7397 -5.6410 5.2883 34 1 3.4170 -5.9701 7.0620 35 1 4.5382 -4.8619 6.2320 36 1 1.7866 -4.1453 7.3476 37 1 3.3575 -3.6630 8.0329 38 1 2.3471 -1.8483 6.6447 39 1 3.8948 -2.4163 5.9734 40 1 0.1059 -4.6206 -0.8744 41 1 -1.2972 -4.9370 -2.8712 42 1 -1.6400 -3.0760 -4.4450 43 1 -0.5891 -0.8909 -4.0225 44 1 0.8072 -0.5602 -2.0234 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171858391.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:55 Heat of formation + Delta-G solvation = -54.122624 kcal Electronic energy + Delta-G solvation = -25098.997041 eV Core-core repulsion = 21595.268007 eV Total energy + Delta-G solvation = -3503.729034 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.74762 -39.22185 -37.20406 -34.97883 -33.67028 -33.47849 -31.90383 -30.15516 -29.54762 -28.47964 -25.58286 -25.03716 -23.79976 -22.03754 -21.29509 -20.61239 -20.25653 -19.18576 -17.58974 -16.37296 -16.29466 -15.70145 -15.49897 -15.11662 -14.67313 -14.55043 -14.35065 -14.26126 -13.64514 -13.40083 -12.98335 -12.84186 -12.78317 -12.62605 -12.30139 -11.91615 -11.67438 -11.51990 -11.43752 -11.22533 -11.13754 -11.07687 -10.84933 -10.77718 -10.61871 -10.47272 -10.40219 -10.10251 -9.97863 -9.29704 -9.16383 -8.69171 -8.05813 -7.74225 -6.82267 -6.25646 -4.49485 2.47979 2.61634 3.07742 3.14619 3.15657 3.81313 3.93059 4.01222 4.48404 4.75136 4.78547 4.82335 4.84013 5.00269 5.18691 5.23175 5.38941 5.46792 5.54533 5.68702 5.77620 5.78955 5.84442 5.90348 5.93030 5.97733 6.03972 6.04909 6.21190 6.22599 6.30830 6.37564 6.69066 6.76241 6.77429 6.84811 7.00654 7.20876 7.29424 7.43589 7.56423 7.67179 7.75558 7.84591 8.11837 8.49394 8.90204 9.31734 9.69815 10.52988 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015139 B = 0.004419 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.084501 B = 6335.010582 C = 7876.449268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.057 3.943 3 Si 0.913 3.087 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.366 4.366 8 H 0.092 0.908 9 N -0.385 5.385 10 C 0.494 3.506 11 O -0.571 6.571 12 C -0.113 4.113 13 C -0.095 4.095 14 C 0.091 3.909 15 H 0.056 0.944 16 C -0.151 4.151 17 C -0.122 4.122 18 C -0.157 4.157 19 C 0.060 3.940 20 O -0.371 6.371 21 C 0.185 3.815 22 C -0.194 4.194 23 C -0.121 4.121 24 C -0.176 4.176 25 C -0.124 4.124 26 C -0.107 4.107 27 H 0.274 0.726 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.047 0.953 40 H 0.175 0.825 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.922 -4.386 8.324 11.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.153 4.153 3 Si 0.738 3.262 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.494 4.494 8 H 0.109 0.891 9 N -0.093 5.093 10 C 0.287 3.713 11 O -0.456 6.456 12 C -0.152 4.152 13 C -0.133 4.133 14 C 0.034 3.966 15 H 0.074 0.926 16 C -0.188 4.188 17 C -0.160 4.160 18 C -0.194 4.194 19 C -0.017 4.017 20 O -0.290 6.290 21 C 0.088 3.912 22 C -0.213 4.213 23 C -0.140 4.140 24 C -0.195 4.195 25 C -0.143 4.143 26 C -0.127 4.127 27 H 0.085 0.915 28 H 0.119 0.881 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.065 0.935 40 H 0.192 0.808 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.382 -4.645 8.314 10.939 hybrid contribution 0.444 1.077 0.054 1.166 sum 5.825 -3.568 8.369 10.803 Atomic orbital electron populations 1.70027 1.06092 1.28703 1.42530 1.25607 0.95266 1.00113 0.94317 0.86226 0.79495 0.80989 0.79497 1.19403 1.20581 1.19232 1.19240 0.92093 0.82463 1.55560 0.89082 1.41020 1.39613 1.13999 1.14626 1.21020 0.81271 0.83889 0.85099 1.90156 1.50563 1.26582 1.78274 1.21285 1.00827 0.99727 0.93384 1.21394 1.01511 0.98299 0.92110 1.22187 0.96599 0.86123 0.91713 0.92590 1.22214 1.01837 0.98606 0.96179 1.21589 0.99435 0.98182 0.96748 1.22200 1.01830 0.96516 0.98895 1.22516 0.97474 0.96498 0.85218 1.88030 1.54781 1.52203 1.34001 1.18319 0.92932 0.92965 0.87023 1.22807 0.99652 0.99285 0.99598 1.20864 0.99759 0.97816 0.95574 1.20773 1.03940 0.94442 1.00336 1.20765 0.99360 0.96533 0.97681 1.21041 0.99671 0.98937 0.93091 0.91501 0.88111 0.90145 0.90267 0.90827 0.90915 0.90979 0.91784 0.91991 0.91144 0.91318 0.89138 0.93465 0.80849 0.87815 0.88276 0.87866 0.85111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.19 11.37 55.49 0.63 -21.56 16 2 C 0.06 1.39 3.51 -17.49 -0.06 1.33 16 3 Si 0.91 18.83 29.57 -169.99 -5.03 13.80 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 7 C -0.37 -9.09 7.61 -14.94 -0.11 -9.21 16 8 H 0.09 2.14 7.85 -52.49 -0.41 1.73 16 9 N -0.39 -9.83 2.62 -58.98 -0.15 -9.99 16 10 C 0.49 11.77 7.57 -10.99 -0.08 11.69 16 11 O -0.57 -14.10 12.37 5.56 0.07 -14.03 16 12 C -0.11 -2.21 4.42 -27.89 -0.12 -2.33 16 13 C -0.10 -1.59 4.23 -26.73 -0.11 -1.70 16 14 C 0.09 1.28 2.65 -26.68 -0.07 1.21 16 15 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 16 C -0.15 -1.74 5.42 -26.59 -0.14 -1.88 16 17 C -0.12 -1.19 6.03 -26.55 -0.16 -1.35 16 18 C -0.16 -1.54 6.14 -26.59 -0.16 -1.70 16 19 C 0.06 0.70 6.85 37.21 0.25 0.96 16 20 O -0.37 -5.73 9.95 -35.23 -0.35 -6.09 16 21 C 0.18 4.75 6.05 -83.70 -0.51 4.24 16 22 C -0.19 -4.72 9.06 -39.37 -0.36 -5.08 16 23 C -0.12 -2.60 10.04 -39.61 -0.40 -3.00 16 24 C -0.18 -3.59 10.04 -39.53 -0.40 -3.99 16 25 C -0.12 -2.70 10.04 -39.61 -0.40 -3.09 16 26 C -0.11 -2.62 7.87 -39.37 -0.31 -2.93 16 27 H 0.27 6.87 8.32 -40.82 -0.34 6.53 16 28 H 0.10 2.14 7.72 -51.92 -0.40 1.74 16 29 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 30 H 0.08 1.26 8.04 -51.92 -0.42 0.85 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.18 4.35 4.51 -56.33 -0.25 4.10 16 41 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 42 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 43 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 44 H 0.13 3.31 5.15 -52.48 -0.27 3.04 16 LS Contribution 350.02 15.07 5.27 5.27 Total: -1.00 -28.74 350.02 -9.51 -38.25 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -6.81 Total: 11.17 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -3.14 Total: -16.83 kcal Atomic # 7 Polarization: -32.03 SS G_CDS: 0.48 Total: -31.55 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.28 Total: -20.11 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.74 -9.51 -38.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171858391.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.875 kcal (2) G-P(sol) polarization free energy of solvation -28.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds