Wall clock time and date at job start Tue Mar 31 2020 08:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86805 * 120.00211 * 2 1 4 4 H 1.48501 * 109.47078 * 269.99622 * 3 2 1 5 5 H 1.48508 * 109.46986 * 29.99594 * 3 2 1 6 6 H 1.48493 * 109.47271 * 149.99554 * 3 2 1 7 7 C 1.38888 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00528 * 182.40433 * 7 2 1 9 9 N 1.37145 * 119.99984 * 2.40130 * 7 2 1 10 10 C 1.34772 * 119.99986 * 202.66077 * 9 7 2 11 11 O 1.21276 * 119.99875 * 184.78756 * 10 9 7 12 12 C 1.50697 * 120.00271 * 4.79166 * 10 9 7 13 13 C 1.53001 * 109.47443 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47385 * 179.97438 * 13 12 10 15 15 H 1.09004 * 109.47877 * 54.97419 * 14 13 12 16 16 C 1.53089 * 109.48134 * 174.99710 * 14 13 12 17 17 C 1.53182 * 109.16365 * 177.59212 * 16 14 13 18 18 C 1.53172 * 109.03499 * 303.02448 * 17 16 14 19 19 C 1.53091 * 109.16942 * 56.98107 * 18 17 16 20 20 O 1.42896 * 109.48151 * 294.94565 * 14 13 12 21 21 C 1.39791 * 119.99664 * 22.65863 * 9 7 2 22 22 C 1.38959 * 120.07623 * 252.83279 * 21 9 7 23 23 C 1.38081 * 119.91840 * 179.72803 * 22 21 9 24 24 C 1.38312 * 120.08053 * 0.25561 * 23 22 21 25 25 C 1.38310 * 120.15567 * 0.02562 * 24 23 22 26 26 C 1.38088 * 120.07501 * 359.97438 * 25 24 23 27 27 H 0.97003 * 119.99737 * 4.98526 * 1 2 3 28 28 H 1.09006 * 109.46970 * 300.00244 * 12 10 9 29 29 H 1.08998 * 109.47428 * 59.99619 * 12 10 9 30 30 H 1.08999 * 109.46946 * 299.99737 * 13 12 10 31 31 H 1.08993 * 109.46877 * 59.99794 * 13 12 10 32 32 H 1.08999 * 109.52103 * 297.49756 * 16 14 13 33 33 H 1.09004 * 109.52218 * 57.62671 * 16 14 13 34 34 H 1.09003 * 109.54328 * 62.88712 * 17 16 14 35 35 H 1.09000 * 109.54393 * 183.06217 * 17 16 14 36 36 H 1.09004 * 109.52309 * 176.88533 * 18 17 16 37 37 H 1.09000 * 109.52092 * 297.00643 * 18 17 16 38 38 H 1.08997 * 109.48127 * 62.36674 * 19 18 17 39 39 H 1.08993 * 109.48366 * 182.40092 * 19 18 17 40 40 H 1.07998 * 120.04345 * 0.02562 * 22 21 9 41 41 H 1.07998 * 119.95960 * 180.23550 * 23 22 21 42 42 H 1.08001 * 119.92055 * 180.02562 * 24 23 22 43 43 H 1.07993 * 119.96275 * 179.97438 * 25 24 23 44 44 H 1.08004 * 120.03811 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.4959 2.0464 -1.4001 5 1 1.4457 2.6528 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0087 -1.2028 0.0005 8 1 3.0880 -1.2033 0.0398 9 7 1.3238 -2.3900 -0.0487 10 6 1.9034 -3.5213 0.3992 11 8 1.3330 -4.5845 0.2764 12 6 3.2601 -3.4652 1.0527 13 6 3.6861 -4.8755 1.4657 14 6 5.0638 -4.8187 2.1286 15 1 5.0393 -4.1115 2.9577 16 6 5.4356 -6.2079 2.6534 17 6 6.8406 -6.1563 3.2616 18 6 7.8253 -5.6522 2.2021 19 6 7.3613 -4.2844 1.6948 20 8 6.0365 -4.3967 1.1706 21 6 0.0247 -2.4266 -0.5634 22 6 -1.0584 -2.5946 0.2908 23 6 -2.3407 -2.6246 -0.2205 24 6 -2.5474 -2.4931 -1.5817 25 6 -1.4714 -2.3316 -2.4356 26 6 -0.1863 -2.3006 -1.9311 27 1 -0.4850 0.8369 -0.0730 28 1 3.9860 -3.0584 0.3486 29 1 3.2125 -2.8267 1.9348 30 1 2.9603 -5.2827 2.1697 31 1 3.7339 -5.5136 0.5834 32 1 4.7194 -6.5128 3.4164 33 1 5.4195 -6.9240 1.8317 34 1 6.8439 -5.4777 4.1146 35 1 7.1334 -7.1541 3.5882 36 1 8.8182 -5.5597 2.6424 37 1 7.8594 -6.3574 1.3717 38 1 7.3670 -3.5702 2.5182 39 1 8.0348 -3.9400 0.9102 40 1 -0.8978 -2.6967 1.3539 41 1 -3.1831 -2.7513 0.4432 42 1 -3.5515 -2.5165 -1.9789 43 1 -1.6364 -2.2295 -3.4979 44 1 0.6535 -2.1740 -2.5984 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171858393.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:58 Heat of formation + Delta-G solvation = -64.746092 kcal Electronic energy + Delta-G solvation = -24992.004704 eV Core-core repulsion = 21487.815001 eV Total energy + Delta-G solvation = -3504.189702 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.54467 -39.10933 -37.23048 -34.74758 -33.64762 -33.41838 -31.60380 -30.06459 -29.79055 -28.55884 -25.56024 -24.85899 -23.82704 -22.01395 -21.43596 -20.64772 -20.26296 -19.04566 -17.50913 -16.39968 -16.34181 -15.64992 -15.43535 -14.78689 -14.63806 -14.56745 -14.44603 -14.16699 -13.70018 -13.57960 -13.29086 -12.81458 -12.62805 -12.37707 -12.16050 -11.85762 -11.69645 -11.49041 -11.36537 -11.17007 -11.14101 -11.05210 -10.71038 -10.64986 -10.50110 -10.42324 -10.26127 -10.15801 -10.08917 -9.35804 -9.30550 -8.52831 -8.08338 -7.76947 -7.49254 -6.13683 -4.04803 2.57117 2.59906 3.11132 3.19884 3.21812 3.83072 3.91173 4.05527 4.54297 4.73757 4.81352 4.83709 4.92442 5.00171 5.17828 5.22290 5.38815 5.46349 5.55469 5.67538 5.77521 5.78620 5.84479 5.87012 5.94363 5.97320 6.00648 6.04880 6.09399 6.24217 6.32242 6.43078 6.54265 6.63393 6.67095 6.79677 6.92914 7.13830 7.37358 7.40592 7.43419 7.54104 7.70986 7.85788 8.07663 8.49254 9.03756 9.41422 9.84437 10.66860 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015802 B = 0.004147 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.479379 B = 6749.827712 C = 8038.912611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.042 3.958 3 Si 0.922 3.078 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.344 4.344 8 H 0.101 0.899 9 N -0.420 5.420 10 C 0.470 3.530 11 O -0.596 6.596 12 C -0.114 4.114 13 C -0.093 4.093 14 C 0.090 3.910 15 H 0.057 0.943 16 C -0.150 4.150 17 C -0.122 4.122 18 C -0.156 4.156 19 C 0.060 3.940 20 O -0.373 6.373 21 C 0.251 3.749 22 C -0.082 4.082 23 C -0.118 4.118 24 C -0.153 4.153 25 C -0.119 4.119 26 C -0.123 4.123 27 H 0.271 0.729 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.862 -5.655 4.081 11.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.165 4.165 3 Si 0.748 3.252 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.471 4.471 8 H 0.119 0.881 9 N -0.136 5.136 10 C 0.260 3.740 11 O -0.481 6.481 12 C -0.154 4.154 13 C -0.131 4.131 14 C 0.033 3.967 15 H 0.075 0.925 16 C -0.188 4.188 17 C -0.160 4.160 18 C -0.194 4.194 19 C -0.017 4.017 20 O -0.292 6.292 21 C 0.160 3.840 22 C -0.102 4.102 23 C -0.137 4.137 24 C -0.171 4.171 25 C -0.138 4.138 26 C -0.143 4.143 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.108 0.892 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.381 -5.957 3.909 11.000 hybrid contribution 0.528 1.221 0.248 1.354 sum 8.909 -4.735 4.157 10.912 Atomic orbital electron populations 1.69871 1.05524 1.27742 1.45782 1.25351 0.95590 0.99678 0.95907 0.85996 0.79269 0.81414 0.78474 1.20320 1.20833 1.19348 1.19640 0.91987 0.81905 1.53561 0.88096 1.41385 1.11678 1.07731 1.52801 1.20385 0.88624 0.83469 0.81473 1.90559 1.66752 1.29515 1.61285 1.21307 0.95314 0.97118 1.01613 1.21357 0.92433 0.97727 1.01542 1.22218 0.89173 0.93932 0.91398 0.92518 1.22212 0.96765 0.98586 1.01256 1.21590 0.95150 1.01312 0.97936 1.22192 0.99026 0.98674 0.99508 1.22517 0.84765 0.95442 0.99004 1.88002 1.16396 1.88093 1.36732 1.17135 0.84665 0.91451 0.90723 1.20740 0.91917 0.99275 0.98249 1.20642 0.95934 1.02215 0.94943 1.20678 0.97460 1.05202 0.93766 1.20642 0.92703 1.02211 0.98220 1.20921 0.96291 1.02319 0.94740 0.91773 0.89392 0.89896 0.90302 0.90849 0.90879 0.90987 0.91978 0.91776 0.91325 0.91156 0.93435 0.89172 0.88060 0.87796 0.87957 0.87811 0.87664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.33 10.22 55.49 0.57 -21.77 16 2 C 0.04 1.04 5.39 -17.49 -0.09 0.94 16 3 Si 0.92 19.50 29.56 -169.99 -5.02 14.48 16 4 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.34 -8.66 9.03 -14.93 -0.13 -8.80 16 8 H 0.10 2.39 6.55 -52.49 -0.34 2.05 16 9 N -0.42 -10.72 2.67 -58.98 -0.16 -10.88 16 10 C 0.47 11.37 7.53 -10.99 -0.08 11.29 16 11 O -0.60 -15.70 15.88 5.56 0.09 -15.62 16 12 C -0.11 -2.22 4.22 -27.88 -0.12 -2.34 16 13 C -0.09 -1.56 4.21 -26.73 -0.11 -1.68 16 14 C 0.09 1.26 2.64 -26.69 -0.07 1.19 16 15 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 16 C -0.15 -1.74 5.42 -26.59 -0.14 -1.88 16 17 C -0.12 -1.18 6.03 -26.55 -0.16 -1.34 16 18 C -0.16 -1.49 6.13 -26.60 -0.16 -1.65 16 19 C 0.06 0.67 6.84 37.20 0.25 0.92 16 20 O -0.37 -5.54 9.94 -35.23 -0.35 -5.89 16 21 C 0.25 6.41 2.32 -83.69 -0.19 6.21 16 22 C -0.08 -2.01 8.83 -39.37 -0.35 -2.35 16 23 C -0.12 -2.53 10.04 -39.61 -0.40 -2.93 16 24 C -0.15 -3.07 10.04 -39.53 -0.40 -3.47 16 25 C -0.12 -2.51 10.04 -39.61 -0.40 -2.90 16 26 C -0.12 -2.95 9.65 -39.37 -0.38 -3.33 16 27 H 0.27 6.86 8.32 -40.82 -0.34 6.52 16 28 H 0.09 1.72 7.18 -51.93 -0.37 1.35 16 29 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 30 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 31 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.10 2.50 8.06 -52.49 -0.42 2.07 16 41 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 42 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 43 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 44 H 0.11 2.49 8.06 -52.48 -0.42 2.07 16 LS Contribution 357.91 15.07 5.39 5.39 Total: -1.00 -29.63 357.91 -9.46 -39.08 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -7.03 Total: 7.31 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -2.94 Total: -12.12 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.41 Total: -32.64 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.26 Total: -21.50 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.63 -9.46 -39.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171858393.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.663 kcal (2) G-P(sol) polarization free energy of solvation -29.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds