Wall clock time and date at job start Tue Mar 31 2020 08:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38389 * 120.11448 * 2 1 4 4 C 1.37696 * 119.97623 * 179.97438 * 3 2 1 5 5 C 1.38920 * 120.78764 * 0.33667 * 4 3 2 6 6 C 1.39245 * 118.87515 * 359.50298 * 5 4 3 7 7 C 1.37973 * 120.24048 * 0.07198 * 6 5 4 8 8 C 1.50699 * 119.83053 * 180.28136 * 7 6 5 9 9 O 1.36136 * 111.22995 * 179.30573 * 5 4 3 10 10 C 1.43770 * 109.23088 * 19.09107 * 9 5 4 11 11 H 1.08998 * 110.75263 * 213.89235 * 10 9 5 12 12 C 1.50704 * 110.74888 * 90.72275 * 10 9 5 13 13 O 1.21278 * 119.99744 * 356.45963 * 12 10 9 14 14 N 1.34778 * 120.00190 * 176.45149 * 12 10 9 15 15 C 1.46495 * 120.00002 * 180.02562 * 14 12 10 16 16 C 1.52996 * 109.47157 * 180.02562 * 15 14 12 17 17 C 1.53003 * 109.47268 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47296 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99656 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99923 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00284 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99961 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46840 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46859 * 119.99788 * 22 20 18 25 25 H 1.48498 * 109.47278 * 239.99936 * 22 20 18 26 26 C 1.51650 * 132.17799 * 180.92102 * 4 3 2 27 27 H 1.09001 * 109.46953 * 90.00161 * 1 2 3 28 28 H 1.09000 * 109.47318 * 209.99759 * 1 2 3 29 29 H 1.09000 * 109.47161 * 330.00389 * 1 2 3 30 30 H 1.08007 * 120.01651 * 359.97438 * 3 2 1 31 31 H 1.08004 * 119.87619 * 180.34508 * 6 5 4 32 32 H 1.09000 * 109.46985 * 270.23291 * 8 7 6 33 33 H 1.09007 * 109.47119 * 30.22883 * 8 7 6 34 34 H 1.08994 * 109.47744 * 150.22901 * 8 7 6 35 35 H 0.96996 * 119.99781 * 0.02562 * 14 12 10 36 36 H 1.09003 * 109.47302 * 300.00192 * 15 14 12 37 37 H 1.09001 * 109.47649 * 60.00039 * 15 14 12 38 38 H 1.08998 * 109.47125 * 299.99677 * 16 15 14 39 39 H 1.08998 * 109.47286 * 59.99851 * 16 15 14 40 40 H 1.09003 * 109.47167 * 299.99832 * 17 16 15 41 41 H 1.08998 * 109.47169 * 59.99681 * 17 16 15 42 42 H 0.96998 * 120.00623 * 180.02562 * 21 20 18 43 43 H 1.08996 * 110.93924 * 282.29793 * 26 4 3 44 44 H 1.08997 * 110.93815 * 45.97797 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2014 1.1971 0.0000 4 6 3.5784 1.1938 0.0005 5 6 4.2865 -0.0013 -0.0059 6 6 3.5804 -1.2014 -0.0024 7 6 2.2007 -1.1958 0.0058 8 6 1.4458 -2.5000 0.0160 9 8 5.6295 0.2215 -0.0195 10 6 5.8911 1.5648 0.4212 11 1 6.7558 1.9796 -0.0967 12 6 6.0945 1.6069 1.9138 13 8 5.9623 0.5972 2.5725 14 7 6.4234 2.7666 2.5167 15 6 6.6216 2.8074 3.9676 16 6 6.9838 4.2317 4.3930 17 6 7.1914 4.2742 5.9083 18 6 7.5488 5.6770 6.3272 19 1 7.6210 6.4598 5.5867 20 6 7.7835 5.9610 7.6559 21 7 7.6961 5.0076 8.5575 22 14 8.2271 7.6997 8.1751 23 1 8.2620 8.5796 6.9794 24 1 7.2107 8.2048 9.1326 25 1 9.5619 7.6966 8.8259 26 6 4.5993 2.3150 0.0187 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6635 2.1337 -0.0004 31 1 4.1147 -2.1401 -0.0017 32 1 1.2612 -2.8210 -1.0092 33 1 2.0354 -3.2571 0.5331 34 1 0.4948 -2.3655 0.5313 35 1 6.5288 3.5742 1.9899 36 1 5.7032 2.5014 4.4686 37 1 7.4291 2.1291 4.2433 38 1 7.9021 4.5381 3.8921 39 1 6.1760 4.9097 4.1175 40 1 6.2734 3.9676 6.4096 41 1 7.9994 3.5963 6.1834 42 1 7.8609 5.2074 9.4923 43 1 4.7016 2.7647 -0.9688 44 1 4.3381 3.0676 0.7627 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173068893.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:40 Heat of formation + Delta-G solvation = -65.611919 kcal Electronic energy + Delta-G solvation = -23779.461605 eV Core-core repulsion = 20275.234358 eV Total energy + Delta-G solvation = -3504.227247 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.65924 -39.32957 -38.06015 -35.44433 -33.67789 -33.26716 -32.26027 -31.64264 -30.71457 -27.60836 -27.05656 -26.28235 -23.93517 -22.77361 -22.29984 -20.90546 -20.74779 -19.99090 -17.78565 -17.26897 -16.77807 -16.34559 -15.62909 -15.34688 -15.26541 -14.93139 -14.49161 -14.30185 -14.18956 -14.09603 -13.74107 -13.28472 -13.15972 -13.01642 -12.73683 -12.39206 -12.32496 -12.25216 -12.03480 -11.87137 -11.65978 -11.53446 -11.26020 -10.94805 -10.93934 -10.77330 -10.59973 -9.91501 -9.87859 -9.41407 -9.13727 -8.91820 -8.86968 -8.40254 -8.10906 -6.04409 -4.07765 1.07183 1.19692 2.51691 2.86078 3.28064 3.32061 3.35809 3.39123 3.50524 4.12289 4.21779 4.41808 4.59578 4.61116 4.66859 4.82433 4.86473 4.98767 5.10588 5.25759 5.27438 5.30379 5.31463 5.41136 5.47759 5.53852 5.60780 5.65747 5.72209 5.75330 5.94102 6.08869 6.10640 6.21965 6.36622 6.38365 6.48054 6.54532 6.76159 6.95232 6.99981 7.56679 7.60597 7.72411 7.94055 8.24254 8.35113 8.99129 9.56684 11.06920 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.023506 B = 0.002385 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.896914 B =11735.238991 C =12036.716913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.118 4.118 3 C -0.064 4.064 4 C -0.177 4.177 5 C 0.113 3.887 6 C -0.130 4.130 7 C -0.053 4.053 8 C -0.116 4.116 9 O -0.276 6.276 10 C 0.063 3.937 11 H 0.141 0.859 12 C 0.491 3.509 13 O -0.522 6.522 14 N -0.720 5.720 15 C 0.117 3.883 16 C -0.120 4.120 17 C 0.023 3.977 18 C -0.522 4.522 19 H 0.056 0.944 20 C 0.056 3.944 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.097 4.097 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.399 0.601 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.261 0.739 43 H 0.102 0.898 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.196 -9.311 -22.539 27.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.118 4.118 3 C -0.082 4.082 4 C -0.177 4.177 5 C 0.068 3.932 6 C -0.149 4.149 7 C -0.053 4.053 8 C -0.173 4.173 9 O -0.188 6.188 10 C 0.003 3.997 11 H 0.158 0.842 12 C 0.275 3.725 13 O -0.397 6.397 14 N -0.373 5.373 15 C -0.006 4.006 16 C -0.158 4.158 17 C -0.015 4.015 18 C -0.560 4.560 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.532 5.532 22 Si 0.721 3.279 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.134 4.134 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.233 0.767 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.037 0.963 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.121 0.879 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.082 -10.248 -21.910 27.038 hybrid contribution 0.500 1.561 0.278 1.663 sum -11.582 -8.687 -21.632 26.030 Atomic orbital electron populations 1.20768 0.90855 1.02900 1.02122 1.19585 0.96065 0.92104 1.04080 1.20107 0.91540 0.97938 0.98639 1.20646 0.94702 0.94177 1.08220 1.19470 0.82956 0.94543 0.96198 1.20067 0.92760 0.95766 1.06271 1.19421 0.92254 0.95294 0.98344 1.20867 1.00156 0.93753 1.02482 1.86914 1.20403 1.31272 1.80191 1.23354 1.00818 0.82178 0.93360 0.84190 1.20782 0.77809 0.84247 0.89671 1.90746 1.49619 1.33718 1.65653 1.46141 1.70528 1.10508 1.10128 1.21689 1.01495 0.99934 0.77459 1.21890 1.00342 0.92248 1.01323 1.19039 0.97452 0.97382 0.87583 1.21228 1.47334 0.94786 0.92695 0.92574 1.25037 0.95497 0.97159 0.96818 1.69971 1.49559 1.32155 1.01553 0.86523 0.78084 0.84697 0.78604 1.19756 1.20981 1.20983 1.21742 0.90658 0.97069 1.03967 0.91373 0.91163 0.91656 0.85715 0.85412 0.90909 0.91317 0.90816 0.76720 0.91702 0.91602 0.92628 0.92671 0.96266 0.96249 0.92943 0.87929 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 9.62 36.01 0.35 -0.44 16 2 C -0.12 -1.20 5.89 -104.56 -0.62 -1.81 16 3 C -0.06 -0.69 9.70 -39.72 -0.39 -1.07 16 4 C -0.18 -2.11 6.26 -104.10 -0.65 -2.77 16 5 C 0.11 1.56 6.83 -38.96 -0.27 1.29 16 6 C -0.13 -1.62 9.71 -39.30 -0.38 -2.00 16 7 C -0.05 -0.56 5.87 -104.72 -0.61 -1.18 16 8 C -0.12 -0.86 9.59 36.00 0.35 -0.52 16 9 O -0.28 -3.93 10.43 -39.21 -0.41 -4.34 16 10 C 0.06 0.72 4.10 -26.98 -0.11 0.61 16 11 H 0.14 1.08 8.14 -51.93 -0.42 0.66 16 12 C 0.49 7.45 7.05 -10.98 -0.08 7.38 16 13 O -0.52 -10.49 16.46 -13.48 -0.22 -10.71 16 14 N -0.72 -9.95 5.55 -60.30 -0.33 -10.28 16 15 C 0.12 2.03 5.67 -4.05 -0.02 2.01 16 16 C -0.12 -2.29 5.27 -26.73 -0.14 -2.43 16 17 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 18 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 22 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C -0.10 -0.91 6.65 -26.52 -0.18 -1.09 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.44 5.93 -51.93 -0.31 0.13 16 29 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 30 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 31 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 34 H 0.07 0.46 5.94 -51.93 -0.31 0.16 16 35 H 0.40 4.11 8.47 -40.82 -0.35 3.76 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.10 0.86 7.92 -51.93 -0.41 0.45 16 LS Contribution 366.35 15.07 5.52 5.52 Total: -1.00 -34.86 366.35 -9.86 -44.72 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -6.83 Total: -0.39 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -3.30 Total: -14.84 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.40 Total: -36.31 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.63 Total: -15.04 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.86 -9.86 -44.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173068893.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.889 kcal (2) G-P(sol) polarization free energy of solvation -34.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds