Wall clock time and date at job start Tue Mar 31 2020 08:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38388 * 120.11429 * 2 1 4 4 C 1.37702 * 119.97651 * 179.97438 * 3 2 1 5 5 C 1.38922 * 120.78082 * 0.08090 * 4 3 2 6 6 C 1.39232 * 118.88598 * 0.02562 * 5 4 3 7 7 C 1.37980 * 120.23777 * 359.80982 * 6 5 4 8 8 C 1.50697 * 119.82523 * 180.28719 * 7 6 5 9 9 O 1.36142 * 111.20620 * 179.32073 * 5 4 3 10 10 C 1.43785 * 109.20319 * 19.60163 * 9 5 4 11 11 H 1.08998 * 110.75037 * 90.60446 * 10 9 5 12 12 C 1.50698 * 110.74790 * 213.77692 * 10 9 5 13 13 O 1.21279 * 120.00279 * 3.54530 * 12 10 9 14 14 N 1.34776 * 120.00212 * 183.54866 * 12 10 9 15 15 C 1.46493 * 120.00365 * 180.02562 * 14 12 10 16 16 C 1.52995 * 109.47489 * 179.97438 * 15 14 12 17 17 C 1.53005 * 109.47482 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.47361 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99799 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00155 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00081 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99962 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47270 * 89.99964 * 22 20 18 24 24 H 1.48503 * 109.47489 * 210.00027 * 22 20 18 25 25 H 1.48502 * 109.47358 * 330.00366 * 22 20 18 26 26 C 1.51639 * 132.17595 * 180.90048 * 4 3 2 27 27 H 1.09006 * 109.46878 * 270.01976 * 1 2 3 28 28 H 1.08996 * 109.47243 * 30.02266 * 1 2 3 29 29 H 1.09000 * 109.46996 * 150.02237 * 1 2 3 30 30 H 1.08006 * 120.01328 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.88487 * 180.09446 * 6 5 4 32 32 H 1.08998 * 109.47186 * 90.00527 * 8 7 6 33 33 H 1.09004 * 109.47047 * 210.00022 * 8 7 6 34 34 H 1.08998 * 109.47519 * 330.00309 * 8 7 6 35 35 H 0.97001 * 119.99818 * 359.97438 * 14 12 10 36 36 H 1.09004 * 109.46799 * 299.99748 * 15 14 12 37 37 H 1.09004 * 109.47799 * 59.99313 * 15 14 12 38 38 H 1.09004 * 109.47039 * 299.99778 * 16 15 14 39 39 H 1.09005 * 109.47344 * 59.99439 * 16 15 14 40 40 H 1.08995 * 109.47218 * 299.99918 * 17 16 15 41 41 H 1.08995 * 109.46916 * 59.99655 * 17 16 15 42 42 H 0.96999 * 120.00031 * 179.97438 * 21 20 18 43 43 H 1.09001 * 110.94076 * 282.54806 * 26 4 3 44 44 H 1.09010 * 110.93711 * 46.22670 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2014 1.1971 0.0000 4 6 3.5784 1.1938 0.0005 5 6 4.2865 -0.0014 -0.0006 6 6 3.5804 -1.2015 -0.0029 7 6 2.2006 -1.1959 0.0000 8 6 1.4458 -2.5002 0.0041 9 8 5.6294 0.2217 -0.0149 10 6 5.8906 1.5633 0.4316 11 1 6.0368 1.5894 1.5114 12 6 7.0867 2.1398 -0.2812 13 8 7.6406 1.5009 -1.1505 14 7 7.5409 3.3654 0.0475 15 6 8.7032 3.9261 -0.6458 16 6 9.0080 5.3175 -0.0873 17 6 10.2225 5.9028 -0.8110 18 6 10.5223 7.2736 -0.2613 19 1 9.9078 7.6862 0.5253 20 6 11.5809 8.0009 -0.7624 21 7 12.3289 7.4986 -1.7205 22 14 11.9521 9.7003 -0.0815 23 1 12.8959 9.5814 1.0588 24 1 12.5637 10.5371 -1.1451 25 1 10.6918 10.3336 0.3831 26 6 4.5992 2.3150 0.0183 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6634 2.1337 -0.0004 31 1 4.1146 -2.1401 -0.0022 32 1 1.2659 -2.8126 1.0327 33 1 0.4924 -2.3698 -0.5080 34 1 2.0330 -3.2614 -0.5094 35 1 7.0977 3.8766 0.7426 36 1 9.5652 3.2764 -0.4938 37 1 8.4890 4.0018 -1.7119 38 1 8.1460 5.9670 -0.2397 39 1 9.2223 5.2422 0.9788 40 1 11.0843 5.2533 -0.6582 41 1 10.0086 5.9780 -1.8771 42 1 13.0735 8.0105 -2.0733 43 1 4.6983 2.7673 -0.9684 44 1 4.3403 3.0657 0.7651 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173068899.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:44 Heat of formation + Delta-G solvation = -65.034932 kcal Electronic energy + Delta-G solvation = -23339.902753 eV Core-core repulsion = 19835.700525 eV Total energy + Delta-G solvation = -3504.202227 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.61688 -39.47280 -38.18277 -35.47848 -33.70958 -33.31222 -32.35690 -31.68813 -30.76137 -27.71472 -27.16248 -26.30385 -23.88787 -22.80364 -22.34704 -20.92606 -20.78091 -20.02629 -17.71410 -17.33767 -16.98328 -16.36341 -15.84588 -15.36351 -15.26875 -14.94726 -14.53668 -14.47148 -14.26614 -14.05247 -13.65514 -13.48269 -13.16659 -13.04565 -12.91975 -12.57755 -12.35058 -12.32134 -12.13091 -11.88174 -11.72592 -11.63124 -11.15942 -10.93536 -10.90093 -10.78032 -10.62666 -9.91889 -9.91628 -9.42288 -9.15370 -9.02992 -8.91381 -8.39903 -8.23138 -6.04355 -4.07766 0.95666 1.08053 2.43659 2.64695 3.27389 3.28962 3.35519 3.37949 3.52458 4.05897 4.19713 4.41899 4.49895 4.54907 4.61380 4.71607 4.74946 4.87242 5.00260 5.15738 5.18470 5.31419 5.31544 5.35483 5.38099 5.44828 5.51461 5.61745 5.67356 5.70996 5.83636 5.97354 6.09428 6.11673 6.26505 6.34932 6.38004 6.53520 6.74454 6.92045 6.94347 7.53498 7.60151 7.72111 7.93893 8.20714 8.34817 8.98810 9.56590 11.06859 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.038020 B = 0.002050 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.269640 B =13654.041592 C =14183.478841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.119 4.119 3 C -0.064 4.064 4 C -0.175 4.175 5 C 0.107 3.893 6 C -0.134 4.134 7 C -0.053 4.053 8 C -0.117 4.117 9 O -0.274 6.274 10 C 0.064 3.936 11 H 0.113 0.887 12 C 0.512 3.488 13 O -0.519 6.519 14 N -0.719 5.719 15 C 0.117 3.883 16 C -0.120 4.120 17 C 0.023 3.977 18 C -0.523 4.523 19 H 0.056 0.944 20 C 0.056 3.944 21 N -0.893 5.893 22 Si 0.894 3.106 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.096 4.096 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.400 0.600 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.261 0.739 43 H 0.098 0.902 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.211 -16.248 6.643 30.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.119 4.119 3 C -0.082 4.082 4 C -0.175 4.175 5 C 0.062 3.938 6 C -0.153 4.153 7 C -0.053 4.053 8 C -0.173 4.173 9 O -0.187 6.187 10 C 0.004 3.996 11 H 0.131 0.869 12 C 0.295 3.705 13 O -0.394 6.394 14 N -0.371 5.371 15 C -0.005 4.005 16 C -0.158 4.158 17 C -0.014 4.014 18 C -0.562 4.562 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.532 5.532 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.134 4.134 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.234 0.766 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.116 0.884 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -24.438 -16.822 5.811 30.232 hybrid contribution 0.242 1.425 0.700 1.606 sum -24.196 -15.397 6.511 29.409 Atomic orbital electron populations 1.20770 0.90820 1.02837 1.02241 1.19597 0.96086 0.92085 1.04111 1.20132 0.91511 0.97978 0.98535 1.20666 0.94623 0.94208 1.08041 1.19565 0.83055 0.94619 0.96582 1.20066 0.92739 0.95681 1.06777 1.19426 0.92215 0.95307 0.98325 1.20873 1.00108 0.93688 1.02624 1.86959 1.19653 1.30263 1.81824 1.23311 0.94935 0.81700 0.99649 0.86942 1.19967 0.84537 0.82174 0.83816 1.90760 1.57939 1.59551 1.31130 1.46074 1.33144 1.16963 1.40940 1.21719 0.86224 0.95885 0.96693 1.21900 1.01344 0.92235 1.00370 1.19035 0.91220 0.95511 0.95674 1.21188 1.13426 1.01279 1.20257 0.92625 1.25037 0.96183 0.98247 0.95037 1.69964 1.18470 1.37894 1.26861 0.86573 0.78477 0.84163 0.78639 1.20654 1.21194 1.19902 1.21772 0.90284 0.96987 1.04329 0.91310 0.91659 0.91170 0.85615 0.85296 0.90827 0.90817 0.91325 0.76626 0.91476 0.91527 0.92611 0.92604 0.96216 0.96228 0.92893 0.88367 0.88065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 9.61 36.01 0.35 -0.27 16 2 C -0.12 -1.00 5.89 -104.56 -0.62 -1.61 16 3 C -0.06 -0.58 9.70 -39.72 -0.39 -0.96 16 4 C -0.17 -1.88 6.27 -104.10 -0.65 -2.53 16 5 C 0.11 1.34 7.03 -38.96 -0.27 1.06 16 6 C -0.13 -1.43 9.71 -39.31 -0.38 -1.81 16 7 C -0.05 -0.46 5.87 -104.72 -0.61 -1.08 16 8 C -0.12 -0.67 9.60 36.00 0.35 -0.33 16 9 O -0.27 -3.99 10.39 -39.23 -0.41 -4.40 16 10 C 0.06 0.75 4.08 -26.81 -0.11 0.64 16 11 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 12 C 0.51 7.69 7.12 -10.99 -0.08 7.61 16 13 O -0.52 -10.35 16.58 -13.48 -0.22 -10.57 16 14 N -0.72 -9.74 5.56 -60.30 -0.33 -10.08 16 15 C 0.12 2.00 5.67 -4.05 -0.02 1.97 16 16 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 17 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 18 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 19 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 22 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 C -0.10 -0.93 6.62 -26.35 -0.17 -1.11 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 29 H 0.07 0.32 5.95 -51.93 -0.31 0.01 16 30 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.34 5.94 -51.93 -0.31 0.03 16 34 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 35 H 0.40 4.05 8.47 -40.82 -0.35 3.71 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.10 1.02 7.94 -51.93 -0.41 0.61 16 44 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 LS Contribution 366.68 15.07 5.53 5.53 Total: -1.00 -34.27 366.68 -9.86 -44.13 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.83 Total: -1.40 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -3.31 Total: -13.59 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.40 Total: -35.98 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.63 Total: -14.97 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.27 -9.86 -44.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173068899.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.902 kcal (2) G-P(sol) polarization free energy of solvation -34.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds