Wall clock time and date at job start Tue Mar 31 2020 08:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86795 * 119.99855 * 2 1 4 4 H 1.48495 * 109.47263 * 274.98530 * 3 2 1 5 5 H 1.48495 * 109.47276 * 34.98808 * 3 2 1 6 6 H 1.48500 * 109.46984 * 154.98677 * 3 2 1 7 7 C 1.39908 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99698 * 147.61339 * 7 2 1 9 9 C 1.41155 * 120.00140 * 327.61021 * 7 2 1 10 10 C 1.40861 * 120.16473 * 157.95317 * 9 7 2 11 11 C 1.36386 * 119.82740 * 180.02562 * 10 9 7 12 12 C 1.39475 * 120.16884 * 359.97438 * 11 10 9 13 13 N 1.39236 * 119.83282 * 179.97438 * 12 11 10 14 14 C 1.34773 * 120.00308 * 37.76131 * 13 12 11 15 15 O 1.21282 * 119.99864 * 356.69608 * 14 13 12 16 16 C 1.50696 * 120.00067 * 176.70423 * 14 13 12 17 17 C 1.53004 * 109.47009 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47222 * 179.97438 * 17 16 14 19 19 C 1.53178 * 109.54634 * 65.44360 * 18 17 16 20 20 C 1.53086 * 109.16478 * 176.84899 * 19 18 17 21 21 O 1.42902 * 109.41671 * 302.38974 * 20 19 18 22 22 C 1.42903 * 114.09583 * 61.16015 * 21 20 19 23 23 C 1.53094 * 109.41382 * 298.84256 * 22 21 20 24 24 C 1.39488 * 120.33419 * 0.25351 * 12 11 10 25 25 C 1.36371 * 120.16587 * 359.48732 * 24 12 11 26 26 H 0.96996 * 120.00350 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.08855 * 359.97438 * 10 9 7 28 28 H 1.07998 * 119.91155 * 179.97438 * 11 10 9 29 29 H 0.97007 * 119.99496 * 217.75702 * 13 12 11 30 30 H 1.09000 * 109.47280 * 59.99576 * 16 14 13 31 31 H 1.08999 * 109.47067 * 299.99294 * 16 14 13 32 32 H 1.09000 * 109.47049 * 59.99921 * 17 16 14 33 33 H 1.08999 * 109.47027 * 299.99805 * 17 16 14 34 34 H 1.09004 * 109.61689 * 305.22195 * 18 17 16 35 35 H 1.08999 * 109.52280 * 296.75696 * 19 18 17 36 36 H 1.09003 * 109.52055 * 56.93874 * 19 18 17 37 37 H 1.09001 * 109.47893 * 182.41197 * 20 19 18 38 38 H 1.08998 * 109.48422 * 62.37829 * 20 19 18 39 39 H 1.09001 * 109.48434 * 178.86371 * 22 21 20 40 40 H 1.08999 * 109.49056 * 58.82708 * 22 21 20 41 41 H 1.08999 * 109.52611 * 297.70179 * 23 22 21 42 42 H 1.09002 * 109.52023 * 177.51140 * 23 22 21 43 43 H 1.07992 * 119.91733 * 179.74442 * 24 12 11 44 44 H 1.08004 * 120.08762 * 180.25392 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3848 2.1073 -1.3947 5 1 1.4968 2.6199 0.8028 6 1 3.5889 1.4120 0.5920 7 6 2.0082 -1.2117 -0.0005 8 1 2.9622 -1.2841 -0.5016 9 6 1.4672 -2.3393 0.6538 10 6 1.8853 -3.6352 0.2932 11 6 1.3576 -4.7199 0.9296 12 6 0.4066 -4.5485 1.9354 13 7 -0.1279 -5.6608 2.5801 14 6 0.6570 -6.7207 2.8577 15 8 1.8136 -6.7307 2.4931 16 6 0.0974 -7.8933 3.6210 17 6 1.1872 -8.9522 3.8001 18 6 0.6192 -10.1425 4.5756 19 6 -0.4647 -10.8292 3.7390 20 6 -0.9714 -12.0640 4.4887 21 8 0.1245 -12.9423 4.7527 22 6 1.1470 -12.3699 5.5706 23 6 1.7388 -11.1473 4.8643 24 6 -0.0159 -3.2686 2.2947 25 6 0.5066 -2.1742 1.6711 26 1 -0.4850 0.8400 0.0004 27 1 2.6212 -3.7695 -0.4858 28 1 1.6769 -5.7141 0.6539 29 1 -1.0653 -5.6729 2.8295 30 1 -0.7379 -8.3220 3.0674 31 1 -0.2485 -7.5586 4.5990 32 1 2.0227 -8.5237 4.3535 33 1 1.5327 -9.2869 2.8220 34 1 0.1894 -9.7956 5.5153 35 1 -1.2913 -10.1377 3.5755 36 1 -0.0467 -11.1319 2.7789 37 1 -1.7125 -12.5807 3.8790 38 1 -1.4258 -11.7565 5.4305 39 1 1.9320 -13.1069 5.7403 40 1 0.7206 -12.0663 6.5267 41 1 2.2014 -11.4564 3.9271 42 1 2.4881 -10.6833 5.5058 43 1 -0.7555 -3.1439 3.0716 44 1 0.1816 -1.1836 1.9531 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173112482.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:50 Heat of formation + Delta-G solvation = -88.071401 kcal Electronic energy + Delta-G solvation = -23659.023769 eV Core-core repulsion = 20153.822606 eV Total energy + Delta-G solvation = -3505.201164 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.95026 -39.36906 -37.31984 -35.56584 -34.40720 -33.03248 -31.54016 -31.08154 -29.56994 -28.97011 -26.36109 -24.66958 -23.82496 -22.45610 -21.40369 -20.61781 -20.19739 -19.52059 -17.42050 -16.93553 -16.42558 -16.28626 -15.99110 -15.64256 -15.21685 -14.97931 -14.58958 -14.26538 -13.97278 -13.66398 -13.41509 -12.88692 -12.73705 -12.46453 -12.31350 -12.12112 -12.07715 -11.93439 -11.61262 -11.50283 -11.27559 -11.15269 -10.96513 -10.94926 -10.54629 -10.52145 -10.50611 -10.15734 -9.76143 -9.73289 -9.40069 -9.03429 -8.68276 -7.55357 -7.15005 -6.88880 -4.27685 2.59256 2.97057 3.04388 3.09475 3.12298 3.37225 3.59910 3.78282 3.88571 4.42206 4.48152 4.49734 4.59987 4.72958 4.90037 5.02207 5.09416 5.14116 5.21143 5.28942 5.40208 5.45585 5.52645 5.62039 5.68283 5.69783 5.78562 5.86179 5.95409 6.15063 6.18374 6.28194 6.42755 6.77967 6.90914 6.96159 6.99874 7.14931 7.29128 7.56439 7.70402 7.90015 8.01798 8.25180 8.31255 8.54745 8.80256 8.83529 9.00982 10.01433 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.050617 B = 0.002175 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.037160 B =12872.496669 C =13090.679931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.088 3.912 3 Si 0.896 3.104 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.465 4.465 8 H 0.082 0.918 9 C 0.112 3.888 10 C -0.225 4.225 11 C -0.066 4.066 12 C -0.022 4.022 13 N -0.652 5.652 14 C 0.495 3.505 15 O -0.536 6.536 16 C -0.139 4.139 17 C -0.096 4.096 18 C -0.090 4.090 19 C -0.154 4.154 20 C 0.060 3.940 21 O -0.386 6.386 22 C 0.061 3.939 23 C -0.152 4.152 24 C -0.103 4.103 25 C -0.172 4.172 26 H 0.283 0.717 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.393 0.607 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.049 0.951 39 H 0.092 0.908 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.135 -16.593 10.062 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.493 4.493 8 H 0.100 0.900 9 C 0.109 3.891 10 C -0.245 4.245 11 C -0.086 4.086 12 C -0.114 4.114 13 N -0.295 5.295 14 C 0.282 3.718 15 O -0.413 6.413 16 C -0.179 4.179 17 C -0.134 4.134 18 C -0.109 4.109 19 C -0.192 4.192 20 C -0.017 4.017 21 O -0.305 6.305 22 C -0.016 4.016 23 C -0.190 4.190 24 C -0.123 4.123 25 C -0.191 4.191 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.120 0.880 29 H 0.226 0.774 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.067 0.933 39 H 0.110 0.890 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.518 -16.658 9.724 19.607 hybrid contribution -0.303 1.239 0.220 1.294 sum -3.821 -15.419 9.944 18.741 Atomic orbital electron populations 1.69946 1.08081 1.29856 1.31386 1.25945 0.94368 1.01529 0.91545 0.86507 0.81533 0.80819 0.79207 1.19456 1.19890 1.18092 1.19504 1.05404 0.93758 1.30656 0.90013 1.17595 0.89725 0.91851 0.89884 1.20607 1.07100 0.92356 1.04396 1.20300 0.96449 0.97957 0.93848 1.17072 1.07245 0.84963 1.02089 1.43005 1.12040 1.16200 1.58247 1.20634 0.86475 0.84145 0.80559 1.90681 1.17635 1.80136 1.52842 1.21694 1.00250 0.94895 1.01097 1.21340 0.97379 0.93334 1.01317 1.21242 0.95612 0.95092 0.98919 1.22329 0.99346 0.97500 1.00034 1.22592 0.88821 0.91216 0.99032 1.87926 1.31602 1.39795 1.71136 1.22586 0.90591 0.95671 0.92766 1.22245 0.98421 0.96196 1.02088 1.20174 1.00748 0.91666 0.99734 1.20622 1.02585 0.96638 0.99285 0.90611 0.88763 0.88029 0.77361 0.89326 0.89408 0.90995 0.91023 0.91066 0.90585 0.90796 0.89002 0.93319 0.89004 0.93324 0.90807 0.90699 0.89331 0.87501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.46 11.78 55.55 0.65 -18.80 16 2 C 0.09 2.17 4.77 -17.34 -0.08 2.09 16 3 Si 0.90 18.24 29.66 -169.99 -5.04 13.20 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 5 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.47 -12.37 8.94 -37.85 -0.34 -12.71 16 8 H 0.08 2.11 8.01 -52.49 -0.42 1.69 16 9 C 0.11 3.03 5.57 -106.80 -0.60 2.43 16 10 C -0.22 -5.80 9.74 -39.26 -0.38 -6.18 16 11 C -0.07 -1.61 8.59 -39.79 -0.34 -1.95 16 12 C -0.02 -0.49 6.25 -83.57 -0.52 -1.01 16 13 N -0.65 -11.44 5.30 -9.74 -0.05 -11.49 16 14 C 0.49 8.39 7.64 -10.99 -0.08 8.30 16 15 O -0.54 -11.41 13.60 5.56 0.08 -11.33 16 16 C -0.14 -1.55 5.47 -27.88 -0.15 -1.70 16 17 C -0.10 -1.06 3.98 -26.73 -0.11 -1.16 16 18 C -0.09 -0.77 2.27 -90.44 -0.21 -0.97 16 19 C -0.15 -1.23 5.10 -26.59 -0.14 -1.37 16 20 C 0.06 0.47 6.84 37.20 0.25 0.72 16 21 O -0.39 -3.80 10.77 -35.23 -0.38 -4.18 16 22 C 0.06 0.48 6.84 37.21 0.25 0.73 16 23 C -0.15 -1.26 5.42 -26.59 -0.14 -1.40 16 24 C -0.10 -2.37 9.90 -39.79 -0.39 -2.77 16 25 C -0.17 -4.41 8.74 -39.26 -0.34 -4.76 16 26 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 27 H 0.09 2.32 8.06 -52.49 -0.42 1.90 16 28 H 0.10 2.45 6.45 -52.49 -0.34 2.11 16 29 H 0.39 5.40 8.82 -40.82 -0.36 5.04 16 30 H 0.09 0.81 6.66 -51.93 -0.35 0.46 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 33 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.53 6.75 -51.93 -0.35 0.17 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.11 2.78 6.53 -52.48 -0.34 2.44 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -30.80 355.60 -9.49 -40.29 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -6.78 Total: 8.67 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -3.32 Total: -21.70 kcal Atomic # 7 Polarization: -30.90 SS G_CDS: 0.60 Total: -30.30 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.30 Total: -15.51 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.04 Total: 13.20 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.80 -9.49 -40.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173112482.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.786 kcal (2) G-P(sol) polarization free energy of solvation -30.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds