Wall clock time and date at job start Tue Mar 31 2020 08:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00259 * 2 1 4 4 H 1.48498 * 109.47058 * 269.99944 * 3 2 1 5 5 H 1.48499 * 109.47028 * 29.99789 * 3 2 1 6 6 H 1.48495 * 109.47145 * 149.99891 * 3 2 1 7 7 C 1.37878 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00175 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47280 * 180.02562 * 9 7 2 11 11 O 1.42901 * 109.47391 * 180.02562 * 10 9 7 12 12 C 1.35892 * 117.00164 * 180.02562 * 11 10 9 13 13 C 1.38803 * 120.02328 * 0.02562 * 12 11 10 14 14 C 1.38175 * 120.09098 * 179.97438 * 13 12 11 15 15 C 1.38170 * 120.11794 * 359.76571 * 14 13 12 16 16 C 1.38887 * 120.03887 * 0.51397 * 15 14 13 17 17 N 1.39924 * 120.04079 * 179.73882 * 16 15 14 18 18 C 1.34773 * 120.00101 * 214.81829 * 17 16 15 19 19 O 1.21284 * 120.00280 * 355.37991 * 18 17 16 20 20 C 1.50704 * 119.99565 * 175.38027 * 18 17 16 21 21 C 1.53008 * 109.46678 * 179.97438 * 20 18 17 22 22 C 1.53779 * 113.61349 * 274.13451 * 21 20 18 23 23 C 1.53954 * 87.02006 * 220.04653 * 22 21 20 24 24 C 1.53774 * 113.61224 * 176.52817 * 21 20 18 25 25 C 1.38584 * 120.02013 * 179.97438 * 12 11 10 26 26 H 0.97006 * 120.00225 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46730 * 60.00511 * 9 7 2 28 28 H 1.08997 * 109.47486 * 300.00415 * 9 7 2 29 29 H 1.09002 * 109.47082 * 60.00053 * 10 9 7 30 30 H 1.08997 * 109.47153 * 300.00561 * 10 9 7 31 31 H 1.08005 * 119.95895 * 359.97438 * 13 12 11 32 32 H 1.07994 * 119.94131 * 180.02562 * 14 13 12 33 33 H 1.08002 * 119.97914 * 180.25358 * 15 14 13 34 34 H 0.97007 * 119.99748 * 34.81747 * 17 16 15 35 35 H 1.08994 * 109.47365 * 299.99546 * 20 18 17 36 36 H 1.09001 * 109.47355 * 60.00160 * 20 18 17 37 37 H 1.08999 * 112.84669 * 45.33337 * 21 20 18 38 38 H 1.08991 * 113.61753 * 334.57144 * 22 21 20 39 39 H 1.09004 * 113.60857 * 105.47189 * 22 21 20 40 40 H 1.08991 * 113.54114 * 270.81560 * 23 22 21 41 41 H 1.08999 * 113.66567 * 139.93184 * 23 22 21 42 42 H 1.09004 * 113.61599 * 254.52971 * 24 21 20 43 43 H 1.09005 * 113.61937 * 25.35000 * 24 21 20 44 44 H 1.08002 * 120.06439 * 0.04848 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.2451 -3.6621 0.0027 11 8 1.5306 -4.8997 0.0032 12 6 2.2707 -6.0394 0.0047 13 6 3.6569 -5.9673 0.0062 14 6 4.4108 -7.1252 0.0083 15 6 3.7875 -8.3584 0.0137 16 6 2.4008 -8.4365 0.0064 17 7 1.7696 -9.6853 0.0064 18 6 0.6141 -9.8563 -0.6659 19 8 0.0777 -8.9090 -1.2007 20 6 -0.0115 -11.2245 -0.7530 21 6 -1.3060 -11.1427 -1.5646 22 6 -2.5353 -10.7546 -0.7262 23 6 -3.3227 -11.7917 -1.5474 24 6 -1.9819 -12.5061 -1.7854 25 6 1.6420 -7.2744 0.0058 26 1 -0.4851 0.8401 -0.0004 27 1 0.6240 -2.5574 -0.8881 28 1 0.6246 -2.5563 0.8919 29 1 2.8718 -3.6036 0.8927 30 1 2.8718 -3.6051 -0.8872 31 1 4.1469 -5.0048 0.0058 32 1 5.4891 -7.0664 0.0098 33 1 4.3789 -9.2620 0.0194 34 1 2.1637 -10.4279 0.4903 35 1 0.6809 -11.9103 -1.2410 36 1 -0.2347 -11.5866 0.2507 37 1 -1.1970 -10.5565 -2.4771 38 1 -2.4431 -11.0118 0.3289 39 1 -2.8659 -9.7281 -0.8853 40 1 -3.7664 -11.3824 -2.4549 41 1 -4.0287 -12.3740 -0.9553 42 1 -1.8664 -12.8919 -2.7983 43 1 -1.7370 -13.2438 -1.0211 44 1 0.5635 -7.3324 0.0047 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173636847.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:47:35 Heat of formation + Delta-G solvation = -43.834543 kcal Electronic energy + Delta-G solvation = -23490.425273 eV Core-core repulsion = 19987.142364 eV Total energy + Delta-G solvation = -3503.282910 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.74763 -39.51210 -38.57459 -37.04603 -34.54548 -33.32416 -31.32627 -30.76514 -29.32772 -28.79625 -25.85949 -25.07604 -24.29935 -22.75591 -22.02089 -20.90124 -20.13723 -19.63433 -18.34681 -17.23203 -16.41896 -16.07737 -16.03705 -15.58925 -15.44565 -15.23890 -14.90981 -14.75236 -14.42228 -14.10001 -13.47260 -13.25198 -12.91742 -12.72150 -12.64441 -12.30006 -12.16741 -11.79745 -11.74944 -11.63849 -11.39619 -10.91971 -10.90721 -10.81680 -10.59214 -10.53706 -10.46295 -10.25943 -9.80059 -9.76510 -9.61412 -9.26474 -8.42656 -8.23370 -7.79241 -6.07192 -4.11866 1.39274 1.66434 2.50025 2.85280 3.29447 3.35137 3.38061 3.86731 3.99636 4.22890 4.34220 4.40069 4.44299 4.59902 4.70517 5.00876 5.02704 5.13425 5.20657 5.22476 5.29041 5.39516 5.41812 5.47265 5.49719 5.62858 5.65233 5.71936 5.87349 5.93963 6.00079 6.06838 6.07959 6.25636 6.31603 6.40861 6.55669 6.63210 6.78569 7.01945 7.26060 7.54939 7.68535 7.84804 8.00347 8.11226 8.27277 8.93783 9.52163 11.04443 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017541 B = 0.002553 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.922221 B =10965.943836 C =12429.247477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.065 3.935 11 O -0.312 6.312 12 C 0.163 3.837 13 C -0.226 4.226 14 C -0.063 4.063 15 C -0.197 4.197 16 C 0.175 3.825 17 N -0.675 5.675 18 C 0.507 3.493 19 O -0.507 6.507 20 C -0.129 4.129 21 C -0.097 4.097 22 C -0.136 4.136 23 C -0.143 4.143 24 C -0.137 4.137 25 C -0.164 4.164 26 H 0.263 0.737 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.131 0.869 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.409 0.591 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.460 -28.027 -0.032 28.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.564 4.564 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.009 4.009 11 O -0.225 6.225 12 C 0.115 3.885 13 C -0.245 4.245 14 C -0.081 4.081 15 C -0.218 4.218 16 C 0.081 3.919 17 N -0.321 5.321 18 C 0.295 3.705 19 O -0.380 6.380 20 C -0.169 4.169 21 C -0.115 4.115 22 C -0.174 4.174 23 C -0.180 4.180 24 C -0.175 4.175 25 C -0.184 4.184 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.245 0.755 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.643 -27.224 -0.447 27.278 hybrid contribution 1.000 0.646 0.262 1.219 sum 2.643 -26.578 -0.185 26.710 Atomic orbital electron populations 1.69980 1.06109 1.26943 1.49711 1.24996 0.94903 0.99380 0.94958 0.86484 0.79715 0.82954 0.78207 1.20499 1.21061 1.19774 1.20971 0.93030 0.90206 1.52193 0.92356 1.19130 0.94201 0.88993 0.98932 1.23346 0.97090 0.80792 0.99676 1.86193 1.36502 1.13133 1.86671 1.18994 0.89865 0.87366 0.92305 1.21391 0.93129 0.99941 1.10078 1.20657 0.99352 0.91283 0.96841 1.20625 0.92149 0.98220 1.10758 1.17322 0.90995 0.84333 0.99257 1.43531 1.24843 1.11481 1.52253 1.20959 0.80111 0.91753 0.77713 1.90777 1.60552 1.42197 1.44487 1.21717 0.98410 0.93934 1.02812 1.22369 0.91867 0.97525 0.99776 1.22988 0.95948 0.99960 0.98471 1.22825 0.96327 0.98264 1.00619 1.22974 0.96501 0.96157 1.01854 1.20420 1.01470 0.88546 1.07994 0.92712 0.95343 0.95385 0.93063 0.93077 0.85083 0.85747 0.86177 0.75539 0.88545 0.88618 0.88074 0.90365 0.90889 0.90133 0.91524 0.91435 0.90129 0.83827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -14.95 9.11 -34.44 -0.31 -15.27 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 9 C 0.02 0.67 5.34 -27.89 -0.15 0.52 16 10 C 0.06 1.45 4.68 37.16 0.17 1.63 16 11 O -0.31 -6.92 10.13 -19.40 -0.20 -7.11 16 12 C 0.16 3.07 6.68 -39.24 -0.26 2.81 16 13 C -0.23 -3.66 9.04 -39.40 -0.36 -4.01 16 14 C -0.06 -0.82 10.03 -39.63 -0.40 -1.21 16 15 C -0.20 -2.38 9.96 -39.37 -0.39 -2.77 16 16 C 0.17 2.40 6.30 -83.72 -0.53 1.88 16 17 N -0.68 -6.82 5.34 -9.88 -0.05 -6.87 16 18 C 0.51 5.72 7.67 -10.99 -0.08 5.64 16 19 O -0.51 -8.17 13.23 5.55 0.07 -8.10 16 20 C -0.13 -0.89 5.53 -27.88 -0.15 -1.05 16 21 C -0.10 -0.80 3.11 -89.81 -0.28 -1.08 16 22 C -0.14 -1.19 7.65 -25.83 -0.20 -1.39 16 23 C -0.14 -1.03 8.09 -25.83 -0.21 -1.24 16 24 C -0.14 -0.87 7.65 -25.92 -0.20 -1.07 16 25 C -0.16 -2.86 8.63 -39.25 -0.34 -3.20 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 1.07 7.66 -51.93 -0.40 0.68 16 30 H 0.05 1.09 7.66 -51.93 -0.40 0.69 16 31 H 0.13 2.06 6.29 -52.48 -0.33 1.73 16 32 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.41 2.43 8.82 -40.82 -0.36 2.07 16 35 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.10 0.47 7.87 -51.93 -0.41 0.06 16 37 H 0.10 1.05 7.73 -51.93 -0.40 0.65 16 38 H 0.08 0.61 7.92 -51.93 -0.41 0.20 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 44 H 0.14 2.74 6.23 -52.49 -0.33 2.42 16 LS Contribution 365.20 15.07 5.50 5.50 Total: -1.00 -33.87 365.20 -9.54 -43.41 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.80 Total: 1.05 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -3.78 Total: -18.19 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.68 Total: -33.12 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.12 Total: -15.21 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.87 -9.54 -43.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173636847.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.423 kcal (2) G-P(sol) polarization free energy of solvation -33.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds