Wall clock time and date at job start Tue Mar 31 2020 08:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38301 * 120.06995 * 0.57427 * 12 11 10 14 14 C 1.50698 * 119.92966 * 179.70327 * 13 12 11 15 15 N 1.46508 * 109.46930 * 269.97659 * 14 13 12 16 16 C 1.34776 * 119.99798 * 179.97438 * 15 14 13 17 17 O 1.21286 * 120.00179 * 0.02562 * 16 15 14 18 18 C 1.50705 * 119.99799 * 180.02562 * 16 15 14 19 19 C 1.53003 * 109.47060 * 180.02562 * 18 16 15 20 20 C 1.53001 * 109.47144 * 179.97438 * 19 18 16 21 21 C 1.53777 * 113.61462 * 274.13891 * 20 19 18 22 22 C 1.53957 * 87.01626 * 220.04711 * 21 20 19 23 23 C 1.53773 * 87.11197 * 25.36244 * 22 21 20 24 24 C 1.38297 * 120.13831 * 359.68148 * 13 12 11 25 25 C 1.38101 * 120.07230 * 0.04164 * 24 13 12 26 26 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 28 28 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 29 29 H 1.09003 * 109.47622 * 29.97563 * 14 13 12 30 30 H 1.09004 * 109.47221 * 149.98114 * 14 13 12 31 31 H 0.96994 * 120.00085 * 0.02562 * 15 14 13 32 32 H 1.08997 * 109.47081 * 300.00108 * 18 16 15 33 33 H 1.08995 * 109.47135 * 60.00198 * 18 16 15 34 34 H 1.09002 * 109.47091 * 300.00407 * 19 18 16 35 35 H 1.09009 * 109.46575 * 59.99868 * 19 18 16 36 36 H 1.08999 * 112.84760 * 45.33569 * 20 19 18 37 37 H 1.08999 * 113.61574 * 334.56591 * 21 20 19 38 38 H 1.08998 * 113.61648 * 105.47153 * 21 20 19 39 39 H 1.08997 * 113.53502 * 270.80734 * 22 21 20 40 40 H 1.09004 * 113.66235 * 139.93398 * 22 21 20 41 41 H 1.08995 * 113.61800 * 220.08696 * 23 22 21 42 42 H 1.09009 * 113.69046 * 89.19654 * 23 22 21 43 43 H 1.07999 * 119.96698 * 180.02562 * 24 13 12 44 44 H 1.07992 * 120.03608 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 7 4.6432 -7.6233 0.8925 16 6 5.3594 -8.7563 1.0334 17 8 5.7903 -9.3271 0.0539 18 6 5.6247 -9.3139 2.4081 19 6 6.4535 -10.5944 2.2879 20 6 6.7233 -11.1602 3.6836 21 6 7.9612 -10.5538 4.3653 22 6 8.2744 -11.9717 4.8770 23 6 7.4806 -12.4985 3.6699 24 6 4.2024 -4.5970 -0.2043 25 6 3.4573 -3.4394 -0.0951 26 1 -0.4850 0.8400 0.0004 27 1 0.3579 -4.7892 -0.2301 28 1 1.6954 -6.8451 -0.4339 29 1 3.8358 -7.8156 -1.0337 30 1 5.3321 -6.8566 -0.9342 31 1 4.2983 -7.1670 1.6758 32 1 6.1738 -8.5802 2.9981 33 1 4.6773 -9.5386 2.8981 34 1 5.9046 -11.3283 1.6977 35 1 7.4009 -10.3693 1.7980 36 1 5.8358 -11.1672 4.3163 37 1 8.7016 -10.1693 3.6639 38 1 7.7202 -9.8459 5.1583 39 1 7.8118 -12.2000 5.8371 40 1 9.3345 -12.2237 4.8461 41 1 6.8521 -13.3582 3.9022 42 1 8.0883 -12.6472 2.7772 43 1 5.2812 -4.5470 -0.1947 44 1 3.9527 -2.4846 0.0000 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176428321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:38 Heat of formation + Delta-G solvation = -42.139991 kcal Electronic energy + Delta-G solvation = -22993.070388 eV Core-core repulsion = 19489.860960 eV Total energy + Delta-G solvation = -3503.209428 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.92414 -39.20512 -38.80979 -36.88413 -34.40450 -32.95942 -32.37267 -30.31543 -29.97696 -26.99349 -25.92151 -25.64722 -24.49382 -22.22113 -22.07312 -20.64684 -20.22884 -19.69781 -18.09746 -17.30884 -16.87803 -16.10732 -15.87580 -15.54001 -14.92434 -14.83212 -14.60421 -14.18786 -13.99578 -13.70810 -13.49731 -13.36921 -13.01832 -12.81057 -12.76976 -12.73825 -12.30755 -11.99388 -11.68937 -11.64223 -11.42261 -11.22042 -11.00215 -10.85426 -10.79722 -10.71188 -10.51265 -10.48958 -10.38697 -9.79293 -9.44375 -8.95482 -8.92932 -8.30809 -7.34443 -6.54804 -4.13662 2.05400 2.10745 2.69160 3.05867 3.08422 3.13957 3.41041 3.88794 4.27781 4.34635 4.40860 4.50101 4.55412 4.76310 4.93904 4.99743 5.05643 5.14804 5.22073 5.28896 5.39681 5.41449 5.44803 5.46532 5.50796 5.60356 5.62649 5.64363 5.78336 5.81703 5.93203 5.99660 6.05819 6.10255 6.25032 6.32897 6.52489 6.58443 6.78331 6.93923 7.12340 7.25361 7.33230 7.61176 7.70043 7.89999 8.28671 8.90659 9.58743 10.62783 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.026382 B = 0.002064 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.088227 B =13559.675934 C =14053.859477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.174 6.174 10 C 0.160 3.840 11 C -0.195 4.195 12 C -0.055 4.055 13 C -0.214 4.214 14 C 0.178 3.822 15 N -0.724 5.724 16 C 0.507 3.493 17 O -0.550 6.550 18 C -0.140 4.140 19 C -0.093 4.093 20 C -0.112 4.112 21 C -0.140 4.140 22 C -0.144 4.144 23 C -0.138 4.138 24 C -0.051 4.051 25 C -0.237 4.237 26 H 0.271 0.729 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.402 0.598 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.108 0.892 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.087 -17.876 7.761 22.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.105 3.895 11 C -0.214 4.214 12 C -0.074 4.074 13 C -0.216 4.216 14 C 0.056 3.944 15 N -0.375 5.375 16 C 0.293 3.707 17 O -0.429 6.429 18 C -0.180 4.180 19 C -0.130 4.130 20 C -0.131 4.131 21 C -0.177 4.177 22 C -0.182 4.182 23 C -0.175 4.175 24 C -0.070 4.070 25 C -0.256 4.256 26 H 0.081 0.919 27 H 0.136 0.864 28 H 0.130 0.870 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.236 0.764 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.126 0.874 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.953 -18.045 7.058 22.767 hybrid contribution 0.226 1.210 0.383 1.289 sum 12.178 -16.835 7.441 22.071 Atomic orbital electron populations 1.70042 1.06007 1.27778 1.45497 1.25328 0.95872 0.98955 0.96356 0.85623 0.79148 0.80189 0.78342 1.19039 1.20050 1.20066 1.21407 0.91897 0.80703 1.52925 0.88858 1.83978 1.34524 1.11568 1.77547 1.19440 0.90317 0.88056 0.91638 1.20215 0.99675 0.90277 1.11278 1.20533 0.92770 0.96831 0.97236 1.19217 0.93574 0.93537 1.15241 1.19966 0.98466 0.92580 0.83404 1.46399 1.54822 1.26148 1.10161 1.20786 0.77794 0.80466 0.91628 1.90684 1.51466 1.59726 1.40987 1.21684 1.02364 0.99228 0.94754 1.21314 1.00447 0.95480 0.95804 1.22599 0.97487 0.96328 0.96668 1.23035 0.97971 0.96488 1.00200 1.22842 1.00301 0.96921 0.98128 1.22930 0.98986 0.96951 0.98661 1.20641 0.98371 0.91676 0.96319 1.21164 0.93779 0.98961 1.11710 0.91915 0.86364 0.86978 0.91646 0.91696 0.76407 0.89021 0.89056 0.91159 0.91171 0.89245 0.90050 0.91569 0.90360 0.91640 0.91648 0.90036 0.87423 0.85407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.57 13.67 55.48 0.76 -23.81 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 19.96 29.55 -169.99 -5.02 14.94 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.39 -10.65 9.49 30.89 0.29 -10.36 16 8 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 9 O -0.17 -4.79 9.76 0.05 0.00 -4.79 16 10 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 11 C -0.20 -3.90 9.99 -39.39 -0.39 -4.30 16 12 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 13 C -0.21 -3.41 5.25 -104.58 -0.55 -3.96 16 14 C 0.18 2.49 5.80 -5.19 -0.03 2.46 16 15 N -0.72 -8.77 5.55 -61.46 -0.34 -9.11 16 16 C 0.51 6.32 7.83 -10.98 -0.09 6.23 16 17 O -0.55 -8.95 15.98 5.55 0.09 -8.86 16 18 C -0.14 -1.21 5.70 -27.88 -0.16 -1.37 16 19 C -0.09 -0.82 4.33 -26.73 -0.12 -0.93 16 20 C -0.11 -0.80 3.64 -89.81 -0.33 -1.12 16 21 C -0.14 -0.94 7.65 -25.83 -0.20 -1.14 16 22 C -0.14 -0.91 8.09 -25.83 -0.21 -1.12 16 23 C -0.14 -0.94 7.64 -25.93 -0.20 -1.14 16 24 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 25 C -0.24 -4.88 9.17 -39.39 -0.36 -5.24 16 26 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 28 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 30 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 31 H 0.40 4.24 8.46 -40.82 -0.35 3.89 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.07 0.70 7.83 -51.92 -0.41 0.29 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.57 7.92 -51.93 -0.41 0.16 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.57 8.10 -51.92 -0.42 0.15 16 43 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 44 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 LS Contribution 368.81 15.07 5.56 5.56 Total: -1.00 -30.86 368.81 -9.19 -40.05 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -6.78 Total: 6.17 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -3.46 Total: -20.15 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.42 Total: -32.92 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.09 Total: -13.65 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.86 -9.19 -40.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176428321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.090 kcal (2) G-P(sol) polarization free energy of solvation -30.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds