Wall clock time and date at job start Tue Mar 31 2020 08:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38301 * 120.06995 * 0.57427 * 12 11 10 14 14 C 1.50698 * 119.92966 * 179.70327 * 13 12 11 15 15 N 1.46508 * 109.46930 * 269.97659 * 14 13 12 16 16 C 1.34776 * 119.99798 * 179.97438 * 15 14 13 17 17 O 1.21286 * 120.00179 * 0.02562 * 16 15 14 18 18 C 1.50705 * 119.99799 * 180.02562 * 16 15 14 19 19 C 1.53003 * 109.47060 * 180.02562 * 18 16 15 20 20 C 1.53001 * 109.47144 * 179.97438 * 19 18 16 21 21 C 1.53777 * 113.61462 * 274.13891 * 20 19 18 22 22 C 1.53957 * 87.01626 * 220.04711 * 21 20 19 23 23 C 1.53773 * 87.11197 * 25.36244 * 22 21 20 24 24 C 1.38297 * 120.13831 * 359.68148 * 13 12 11 25 25 C 1.38101 * 120.07230 * 0.04164 * 24 13 12 26 26 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 28 28 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 29 29 H 1.09003 * 109.47622 * 29.97563 * 14 13 12 30 30 H 1.09004 * 109.47221 * 149.98114 * 14 13 12 31 31 H 0.96994 * 120.00085 * 0.02562 * 15 14 13 32 32 H 1.08997 * 109.47081 * 300.00108 * 18 16 15 33 33 H 1.08995 * 109.47135 * 60.00198 * 18 16 15 34 34 H 1.09002 * 109.47091 * 300.00407 * 19 18 16 35 35 H 1.09009 * 109.46575 * 59.99868 * 19 18 16 36 36 H 1.08999 * 112.84760 * 45.33569 * 20 19 18 37 37 H 1.08999 * 113.61574 * 334.56591 * 21 20 19 38 38 H 1.08998 * 113.61648 * 105.47153 * 21 20 19 39 39 H 1.08997 * 113.53502 * 270.80734 * 22 21 20 40 40 H 1.09004 * 113.66235 * 139.93398 * 22 21 20 41 41 H 1.08995 * 113.61800 * 220.08696 * 23 22 21 42 42 H 1.09009 * 113.69046 * 89.19654 * 23 22 21 43 43 H 1.07999 * 119.96698 * 180.02562 * 24 13 12 44 44 H 1.07992 * 120.03608 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 7 4.6432 -7.6233 0.8925 16 6 5.3594 -8.7563 1.0334 17 8 5.7903 -9.3271 0.0539 18 6 5.6247 -9.3139 2.4081 19 6 6.4535 -10.5944 2.2879 20 6 6.7233 -11.1602 3.6836 21 6 7.9612 -10.5538 4.3653 22 6 8.2744 -11.9717 4.8770 23 6 7.4806 -12.4985 3.6699 24 6 4.2024 -4.5970 -0.2043 25 6 3.4573 -3.4394 -0.0951 26 1 -0.4850 0.8400 0.0004 27 1 0.3579 -4.7892 -0.2301 28 1 1.6954 -6.8451 -0.4339 29 1 3.8358 -7.8156 -1.0337 30 1 5.3321 -6.8566 -0.9342 31 1 4.2983 -7.1670 1.6758 32 1 6.1738 -8.5802 2.9981 33 1 4.6773 -9.5386 2.8981 34 1 5.9046 -11.3283 1.6977 35 1 7.4009 -10.3693 1.7980 36 1 5.8358 -11.1672 4.3163 37 1 8.7016 -10.1693 3.6639 38 1 7.7202 -9.8459 5.1583 39 1 7.8118 -12.2000 5.8371 40 1 9.3345 -12.2237 4.8461 41 1 6.8521 -13.3582 3.9022 42 1 8.0883 -12.6472 2.7772 43 1 5.2812 -4.5470 -0.1947 44 1 3.9527 -2.4846 0.0000 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176428321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:37 Heat of formation + Delta-G solvation = -59.971824 kcal Electronic energy + Delta-G solvation = -22993.843634 eV Core-core repulsion = 19489.860960 eV Total energy + Delta-G solvation = -3503.982675 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.04835 -40.58832 -39.57097 -38.48569 -35.63482 -34.28477 -33.69399 -31.85336 -31.37302 -28.06286 -27.30160 -26.42107 -25.72415 -23.65632 -22.96741 -22.11174 -21.19387 -20.24851 -19.87811 -18.90834 -18.02889 -17.04399 -16.84830 -16.45762 -16.28931 -16.15579 -15.86895 -15.54225 -15.36915 -15.17451 -14.69599 -14.48904 -14.34109 -14.10552 -13.68062 -13.61202 -13.31240 -13.26428 -13.04765 -12.79910 -12.58068 -12.35291 -12.28044 -12.21898 -12.09247 -11.86757 -11.38347 -11.20902 -11.15111 -10.95530 -10.87263 -10.70410 -10.03581 -9.82015 -9.01354 -8.49065 -6.17197 0.54065 0.56548 1.35741 1.42992 1.53581 1.71987 2.16441 2.35006 2.85861 3.16244 3.48321 3.71356 3.78618 3.81458 3.88938 4.01734 4.02667 4.04921 4.16470 4.30813 4.41956 4.45852 4.55829 4.67477 4.73690 4.79483 4.83947 4.89986 4.93634 4.95582 5.03396 5.07722 5.12673 5.13870 5.22162 5.25614 5.34135 5.47260 5.49348 5.52583 5.68275 5.71061 5.74275 6.00899 6.14990 6.64237 6.95905 7.31771 7.75088 8.73940 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.026382 B = 0.002064 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.088227 B =13559.675934 C =14053.859477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.229 6.229 10 C 0.122 3.878 11 C -0.204 4.204 12 C -0.044 4.044 13 C -0.181 4.181 14 C 0.183 3.817 15 N -0.718 5.718 16 C 0.506 3.494 17 O -0.591 6.591 18 C -0.132 4.132 19 C -0.089 4.089 20 C -0.108 4.108 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.143 4.143 24 C -0.047 4.047 25 C -0.243 4.243 26 H 0.273 0.727 27 H 0.116 0.884 28 H 0.147 0.853 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.412 0.588 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.138 0.862 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.153 -19.512 8.785 25.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.135 6.135 10 C 0.071 3.929 11 C -0.223 4.223 12 C -0.063 4.063 13 C -0.182 4.182 14 C 0.060 3.940 15 N -0.370 5.370 16 C 0.295 3.705 17 O -0.472 6.472 18 C -0.172 4.172 19 C -0.127 4.127 20 C -0.127 4.127 21 C -0.178 4.178 22 C -0.180 4.180 23 C -0.180 4.180 24 C -0.065 4.065 25 C -0.263 4.263 26 H 0.082 0.918 27 H 0.134 0.866 28 H 0.165 0.835 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.248 0.752 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.119 0.881 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.156 0.844 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.048 -19.732 8.103 25.541 hybrid contribution -0.277 1.312 0.028 1.341 sum 13.771 -18.420 8.131 24.394 Atomic orbital electron populations 1.70181 1.08015 1.28805 1.48637 1.26588 0.96842 1.02763 0.95824 0.84529 0.78298 0.74878 0.78523 1.17400 1.19516 1.19326 1.21871 0.92573 0.81321 1.53130 0.87889 1.83947 1.36069 1.12667 1.80843 1.19993 0.91621 0.87964 0.93309 1.20452 1.00102 0.90412 1.11366 1.20878 0.93061 0.96996 0.95341 1.19500 0.93480 0.94103 1.11159 1.19850 0.98154 0.91390 0.84631 1.46245 1.54792 1.26219 1.09707 1.21412 0.76675 0.79828 0.92606 1.90677 1.53014 1.60805 1.42663 1.21715 1.03714 0.99208 0.92547 1.21250 0.99459 0.95396 0.96573 1.22594 0.98087 0.96310 0.95671 1.23037 0.97603 0.96897 1.00244 1.22856 1.00437 0.96479 0.98211 1.22958 0.99152 0.97147 0.98749 1.20934 0.99785 0.90780 0.95010 1.21246 0.93019 1.00054 1.11935 0.91796 0.86636 0.83522 0.91212 0.91500 0.75166 0.87054 0.86750 0.92629 0.92784 0.88069 0.90653 0.90803 0.89508 0.91504 0.91193 0.90746 0.84385 0.86192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.29 13.67 21.62 0.30 -54.99 16 2 C -0.02 -1.24 5.49 84.84 0.47 -0.78 16 3 Si 1.02 41.83 29.55 68.60 2.03 43.86 16 4 H -0.25 -9.47 7.11 99.48 0.71 -8.77 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 6 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.41 -23.35 9.49 67.92 0.64 -22.71 16 8 H 0.10 5.32 5.20 -2.91 -0.02 5.31 16 9 O -0.23 -13.35 9.76 -22.72 -0.22 -13.58 16 10 C 0.12 5.78 6.65 22.58 0.15 5.93 16 11 C -0.20 -8.13 9.99 22.39 0.22 -7.90 16 12 C -0.04 -1.36 9.69 22.25 0.22 -1.14 16 13 C -0.18 -5.16 5.25 -19.84 -0.10 -5.26 16 14 C 0.18 4.41 5.80 85.63 0.50 4.91 16 15 N -0.72 -14.70 5.55 -466.75 -2.59 -17.29 16 16 C 0.51 11.13 7.83 87.66 0.69 11.81 16 17 O -0.59 -18.07 15.98 -3.05 -0.05 -18.12 16 18 C -0.13 -1.85 5.70 29.85 0.17 -1.68 16 19 C -0.09 -1.40 4.33 30.60 0.13 -1.27 16 20 C -0.11 -1.28 3.64 -10.27 -0.04 -1.32 16 21 C -0.14 -1.58 7.65 31.18 0.24 -1.34 16 22 C -0.14 -1.50 8.09 31.18 0.25 -1.25 16 23 C -0.14 -1.70 7.64 31.12 0.24 -1.47 16 24 C -0.05 -1.48 9.69 22.25 0.22 -1.26 16 25 C -0.24 -9.95 9.17 22.39 0.21 -9.74 16 26 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 27 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 28 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 29 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 30 H 0.07 1.67 8.08 -2.39 -0.02 1.65 16 31 H 0.41 6.97 8.46 -92.71 -0.78 6.18 16 32 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 35 H 0.05 1.02 7.83 -2.38 -0.02 1.00 16 36 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 0.94 7.92 -2.39 -0.02 0.92 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 0.98 8.10 -2.38 -0.02 0.96 16 43 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 44 H 0.12 5.03 5.64 -2.91 -0.02 5.02 16 Total: -1.00 -71.34 368.81 3.87 -67.48 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 0.21 Total: 27.09 kcal Atomic # 6 Polarization: -38.64 SS G_CDS: 4.19 Total: -34.45 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: -2.29 Total: -72.28 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.27 Total: -31.69 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -71.34 3.87 -67.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176428321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.504 kcal (2) G-P(sol) polarization free energy of solvation -71.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds