Wall clock time and date at job start Tue Mar 31 2020 08:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99715 * 2 1 4 4 H 1.48504 * 109.46872 * 269.99657 * 3 2 1 5 5 H 1.48492 * 109.47494 * 29.99976 * 3 2 1 6 6 H 1.48499 * 109.47012 * 150.00418 * 3 2 1 7 7 C 1.37872 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00414 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99771 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47073 * 176.00483 * 9 7 2 11 11 H 1.09000 * 109.47045 * 305.71464 * 10 9 7 12 12 N 1.46497 * 109.47212 * 185.71705 * 10 9 7 13 13 C 1.34779 * 120.00109 * 86.45603 * 12 10 9 14 14 O 1.21285 * 119.99681 * 355.11431 * 13 12 10 15 15 C 1.50697 * 120.00061 * 175.10935 * 13 12 10 16 16 C 1.53003 * 109.46835 * 180.02562 * 15 13 12 17 17 H 1.08995 * 110.27667 * 304.36368 * 16 15 13 18 18 C 1.55502 * 110.36526 * 182.25571 * 16 15 13 19 19 C 1.55307 * 100.69667 * 204.61011 * 18 16 15 20 20 C 1.54377 * 102.43601 * 34.12788 * 19 18 16 21 21 O 1.43244 * 107.59017 * 338.54513 * 20 19 18 22 22 C 1.50703 * 109.46981 * 65.71718 * 10 9 7 23 23 C 1.38237 * 119.99809 * 79.72894 * 22 10 9 24 24 C 1.38234 * 119.99911 * 179.80727 * 23 22 10 25 25 C 1.38243 * 119.99932 * 0.42117 * 24 23 22 26 26 C 1.38235 * 119.99382 * 359.80807 * 25 24 23 27 27 C 1.38227 * 119.99868 * 259.99858 * 22 10 9 28 28 H 0.97006 * 120.00225 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47164 * 56.00672 * 9 7 2 30 30 H 1.09001 * 109.47203 * 296.00459 * 9 7 2 31 31 H 0.97001 * 120.00249 * 266.46715 * 12 10 9 32 32 H 1.09001 * 109.46817 * 60.00881 * 15 13 12 33 33 H 1.08996 * 109.47212 * 300.00211 * 15 13 12 34 34 H 1.08998 * 111.33118 * 86.73645 * 18 16 15 35 35 H 1.08996 * 111.14949 * 322.40656 * 18 16 15 36 36 H 1.09002 * 110.84537 * 275.84032 * 19 18 16 37 37 H 1.08993 * 110.84996 * 152.42148 * 19 18 16 38 38 H 1.09000 * 109.83466 * 98.05496 * 20 19 18 39 39 H 1.08995 * 109.83455 * 219.03274 * 20 19 18 40 40 H 1.07996 * 120.00126 * 359.97438 * 23 22 10 41 41 H 1.08001 * 120.00354 * 180.20346 * 24 23 22 42 42 H 1.07989 * 119.99930 * 179.78952 * 25 24 23 43 43 H 1.08007 * 119.99176 * 179.97438 * 26 25 24 44 44 H 1.08005 * 120.00533 * 359.97438 * 27 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6330 0.1012 11 1 3.5774 -3.1154 0.9719 12 7 5.4801 -2.6256 0.2381 13 6 6.0420 -2.5071 1.4574 14 8 5.3439 -2.3178 2.4310 15 6 7.5376 -2.6101 1.6111 16 6 7.9114 -2.4423 3.0852 17 1 7.5150 -1.5030 3.4709 18 6 9.4559 -2.4882 3.2604 19 6 9.5646 -2.9492 4.7395 20 6 8.3476 -3.8877 4.8856 21 8 7.4125 -3.5476 3.8551 22 6 3.6376 -3.3908 -1.1436 23 6 4.3790 -3.2403 -2.3006 24 6 4.0292 -3.9385 -3.4412 25 6 2.9328 -4.7804 -3.4274 26 6 2.1887 -4.9271 -2.2717 27 6 2.5408 -4.2319 -1.1299 28 1 -0.4851 0.8401 0.0004 29 1 3.8752 -0.6189 0.8515 30 1 3.8745 -0.7441 -0.9241 31 1 6.0415 -2.7058 -0.5489 32 1 8.0179 -1.8281 1.0229 33 1 7.8725 -3.5862 1.2605 34 1 9.9001 -1.5025 3.1225 35 1 9.9064 -3.2177 2.5875 36 1 9.4829 -2.0997 5.4176 37 1 10.4949 -3.4911 4.9096 38 1 8.6640 -4.9244 4.7701 39 1 7.8873 -3.7471 5.8635 40 1 5.2331 -2.5795 -2.3126 41 1 4.6104 -3.8235 -4.3443 42 1 2.6576 -5.3232 -4.3194 43 1 1.3319 -5.5845 -2.2610 44 1 1.9592 -4.3464 -0.2271 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178624995.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:41 Heat of formation + Delta-G solvation = -66.058018 kcal Electronic energy + Delta-G solvation = -24668.580281 eV Core-core repulsion = 21164.333689 eV Total energy + Delta-G solvation = -3504.246592 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.97144 -39.21031 -38.23964 -35.11639 -32.80376 -32.40313 -31.85462 -30.90532 -30.39171 -29.04186 -26.88432 -24.69460 -22.38759 -21.98404 -21.81552 -21.51757 -20.07446 -19.48301 -17.40110 -17.00420 -16.68725 -16.12991 -15.78706 -15.28561 -14.96407 -14.64631 -14.54730 -14.01003 -13.99067 -13.64866 -13.27081 -12.97985 -12.89088 -12.80173 -12.60259 -12.21755 -12.07559 -11.89029 -11.71393 -11.38580 -11.28151 -11.17506 -11.00405 -10.76536 -10.61901 -10.57280 -9.98682 -9.84545 -9.48825 -9.39899 -9.08625 -8.54201 -8.48927 -8.42702 -8.07038 -5.98652 -3.95761 1.83224 1.88180 3.11819 3.33964 3.41695 3.46940 3.57831 3.77758 4.28856 4.29292 4.50598 4.57247 4.72486 4.98984 4.99909 5.09558 5.24399 5.28086 5.33942 5.36796 5.38895 5.41016 5.47550 5.54236 5.55451 5.61002 5.71178 5.82491 5.92595 6.02292 6.04302 6.19456 6.36624 6.51278 6.59460 6.80838 6.88034 6.94363 7.06475 7.07060 7.32263 7.36481 7.49105 7.80948 8.00393 8.55979 8.74003 9.05406 9.63554 11.14454 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.011438 B = 0.004475 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.309822 B = 6256.013657 C = 7886.361395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.511 4.511 8 H 0.078 0.922 9 C -0.014 4.014 10 C 0.192 3.808 11 H 0.092 0.908 12 N -0.730 5.730 13 C 0.508 3.492 14 O -0.520 6.520 15 C -0.142 4.142 16 C 0.098 3.902 17 H 0.079 0.921 18 C -0.153 4.153 19 C -0.156 4.156 20 C 0.048 3.952 21 O -0.363 6.363 22 C -0.051 4.051 23 C -0.122 4.122 24 C -0.124 4.124 25 C -0.133 4.133 26 C -0.119 4.119 27 C -0.092 4.092 28 H 0.262 0.738 29 H 0.029 0.971 30 H 0.011 0.989 31 H 0.391 0.609 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.117 0.883 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.815 -8.436 0.116 21.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.550 4.550 8 H 0.096 0.904 9 C -0.052 4.052 10 C 0.089 3.911 11 H 0.110 0.890 12 N -0.382 5.382 13 C 0.294 3.706 14 O -0.395 6.395 15 C -0.182 4.182 16 C 0.040 3.960 17 H 0.097 0.903 18 C -0.191 4.191 19 C -0.194 4.194 20 C -0.029 4.029 21 O -0.282 6.282 22 C -0.052 4.052 23 C -0.140 4.140 24 C -0.142 4.142 25 C -0.151 4.151 26 C -0.137 4.137 27 C -0.110 4.110 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.030 0.970 31 H 0.225 0.775 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.135 0.865 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 18.943 -8.299 0.819 20.698 hybrid contribution 0.742 1.126 -0.500 1.439 sum 19.685 -7.173 0.319 20.954 Atomic orbital electron populations 1.69902 1.06167 1.26727 1.51286 1.24926 0.94658 0.98860 0.94606 0.86854 0.80612 0.84046 0.78261 1.20469 1.21377 1.19029 1.20992 0.88716 0.94771 1.50505 0.90413 1.19921 0.97777 0.90722 0.96770 1.20022 0.77831 0.98256 0.95031 0.88976 1.46306 1.08341 1.75262 1.08262 1.20363 0.89995 0.76988 0.83299 1.90762 1.63809 1.46793 1.38143 1.21871 0.94458 1.04635 0.97219 1.22786 0.91508 0.91391 0.90346 0.90292 1.23430 0.96290 1.02678 0.96669 1.23104 0.99121 1.00148 0.96996 1.23104 0.89218 0.98313 0.92232 1.88589 1.43452 1.50699 1.45432 1.19886 0.95280 0.94951 0.95086 1.20793 1.00396 0.99914 0.92920 1.20952 0.97781 0.97758 0.97674 1.20990 0.96352 0.99955 0.97838 1.21066 0.99410 0.99985 0.93201 1.21016 0.95994 0.95210 0.98774 0.92821 0.95272 0.97034 0.77535 0.87992 0.88488 0.89779 0.90243 0.90537 0.90225 0.91657 0.91594 0.86884 0.86778 0.86846 0.86495 0.85843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.87 22.46 27.55 -169.99 -4.68 17.78 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.27 -6.70 6.43 56.52 0.36 -6.34 16 7 C -0.51 -14.66 9.19 -34.44 -0.32 -14.97 16 8 H 0.08 2.34 6.69 -52.49 -0.35 1.99 16 9 C -0.01 -0.34 3.82 -27.88 -0.11 -0.44 16 10 C 0.19 3.94 2.18 -69.08 -0.15 3.79 16 11 H 0.09 2.12 7.47 -51.93 -0.39 1.73 16 12 N -0.73 -12.08 5.01 -54.93 -0.28 -12.36 16 13 C 0.51 8.76 7.70 -10.99 -0.08 8.68 16 14 O -0.52 -11.59 15.22 -6.30 -0.10 -11.69 16 15 C -0.14 -1.67 5.46 -27.88 -0.15 -1.82 16 16 C 0.10 1.21 2.93 -25.40 -0.07 1.14 16 17 H 0.08 1.11 8.00 -51.93 -0.42 0.69 16 18 C -0.15 -1.26 6.61 -24.18 -0.16 -1.42 16 19 C -0.16 -1.24 7.00 -24.79 -0.17 -1.42 16 20 C 0.05 0.51 7.80 37.88 0.30 0.80 16 21 O -0.36 -5.41 10.41 -47.08 -0.49 -5.90 16 22 C -0.05 -0.96 4.49 -104.62 -0.47 -1.43 16 23 C -0.12 -1.96 9.05 -39.58 -0.36 -2.32 16 24 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 25 C -0.13 -1.96 10.05 -39.58 -0.40 -2.35 16 26 C -0.12 -1.92 10.05 -39.58 -0.40 -2.31 16 27 C -0.09 -1.71 8.64 -39.59 -0.34 -2.05 16 28 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 29 H 0.03 0.77 6.92 -51.93 -0.36 0.41 16 30 H 0.01 0.28 7.76 -51.93 -0.40 -0.13 16 31 H 0.39 5.06 6.89 -40.82 -0.28 4.78 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.11 1.56 6.92 -52.49 -0.36 1.20 16 41 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 44 H 0.12 2.35 7.83 -52.48 -0.41 1.94 16 LS Contribution 359.30 15.07 5.41 5.41 Total: -1.00 -35.84 359.30 -9.53 -45.38 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.79 Total: 5.14 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -3.38 Total: -16.34 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.50 Total: -39.79 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.59 Total: -17.58 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.68 Total: 17.78 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.84 -9.53 -45.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178624995.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.683 kcal (2) G-P(sol) polarization free energy of solvation -35.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds