Wall clock time and date at job start Tue Mar 31 2020 08:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86796 * 120.00217 * 2 1 4 4 H 1.48506 * 109.47332 * 270.00430 * 3 2 1 5 5 H 1.48506 * 109.47024 * 30.00259 * 3 2 1 6 6 H 1.48497 * 109.47242 * 150.00058 * 3 2 1 7 7 C 1.39935 * 119.99735 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00211 * 162.56471 * 7 2 1 9 9 C 1.41440 * 120.00279 * 342.56006 * 7 2 1 10 10 C 1.40785 * 120.17448 * 154.94473 * 9 7 2 11 11 C 1.37713 * 120.03451 * 180.02562 * 10 9 7 12 12 C 1.38365 * 120.41438 * 0.04949 * 11 10 9 13 13 C 1.39880 * 120.35875 * 359.95054 * 12 11 10 14 14 C 1.47887 * 120.02374 * 180.29562 * 13 12 11 15 15 O 1.21558 * 119.99701 * 179.72426 * 14 13 12 16 16 N 1.34773 * 120.00305 * 359.73122 * 14 13 12 17 17 C 1.46501 * 120.00016 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.47153 * 179.97438 * 17 16 14 19 19 C 1.53002 * 109.47236 * 180.02562 * 18 17 16 20 20 H 1.08998 * 109.47616 * 304.99987 * 19 18 17 21 21 C 1.53085 * 109.48009 * 184.97701 * 19 18 17 22 22 C 1.53172 * 109.16485 * 182.41424 * 21 19 18 23 23 C 1.53188 * 109.04388 * 56.96557 * 22 21 19 24 24 C 1.53095 * 109.15922 * 303.02864 * 23 22 21 25 25 O 1.42893 * 109.48138 * 65.02155 * 19 18 17 26 26 C 1.39029 * 119.94966 * 0.03029 * 13 12 11 27 27 H 0.97000 * 119.99515 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.98676 * 0.03038 * 10 9 7 29 29 H 1.08001 * 119.79123 * 180.02562 * 11 10 9 30 30 H 1.07999 * 119.82154 * 179.97438 * 12 11 10 31 31 H 0.96992 * 120.00053 * 359.97438 * 16 14 13 32 32 H 1.09000 * 109.47358 * 300.00176 * 17 16 14 33 33 H 1.09001 * 109.46883 * 59.99820 * 17 16 14 34 34 H 1.09007 * 109.46953 * 300.00137 * 18 17 16 35 35 H 1.08997 * 109.47176 * 59.99427 * 18 17 16 36 36 H 1.08997 * 109.52318 * 302.31326 * 21 19 18 37 37 H 1.09006 * 109.52534 * 62.49832 * 21 19 18 38 38 H 1.08999 * 109.54092 * 297.09821 * 22 21 19 39 39 H 1.08999 * 109.61971 * 176.87687 * 22 21 19 40 40 H 1.09000 * 109.52215 * 183.12068 * 23 22 21 41 41 H 1.08999 * 109.57476 * 62.95937 * 23 22 21 42 42 H 1.09005 * 109.47816 * 297.61946 * 24 23 22 43 43 H 1.09000 * 109.47804 * 177.59147 * 24 23 22 44 44 H 1.08004 * 120.20324 * 180.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4398 2.6526 0.7001 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0507 -1.2334 -0.2808 9 6 1.3494 -2.4088 0.3660 10 6 1.8191 -3.6485 -0.1078 11 6 1.1755 -4.8121 0.2505 12 6 0.0653 -4.7730 1.0753 13 6 -0.4158 -3.5506 1.5558 14 6 -1.5991 -3.5180 2.4422 15 8 -2.0137 -2.4559 2.8636 16 7 -2.2177 -4.6659 2.7830 17 6 -3.3896 -4.6336 3.6616 18 6 -3.8962 -6.0593 3.8887 19 6 -5.1205 -6.0255 4.8058 20 1 -4.8694 -5.5015 5.7280 21 6 -5.5526 -7.4571 5.1334 22 6 -6.8136 -7.4155 6.0018 23 6 -7.9040 -6.6336 5.2626 24 6 -7.3808 -5.2338 4.9302 25 8 -6.1906 -5.3451 4.1472 26 6 0.2226 -2.3668 1.2039 27 1 -0.4849 0.8401 0.0004 28 1 2.6847 -3.6871 -0.7526 29 1 1.5394 -5.7610 -0.1150 30 1 -0.4323 -5.6914 1.3499 31 1 -1.8870 -5.5134 2.4466 32 1 -3.1146 -4.1887 4.6179 33 1 -4.1758 -4.0387 3.1969 34 1 -4.1713 -6.5038 2.9322 35 1 -3.1101 -6.6546 4.3532 36 1 -5.7647 -7.9942 4.2089 37 1 -4.7538 -7.9639 5.6750 38 1 -6.5889 -6.9222 6.9475 39 1 -7.1597 -8.4311 6.1935 40 1 -8.7868 -6.5516 5.8967 41 1 -8.1648 -7.1534 4.3407 42 1 -7.1596 -4.6995 5.8542 43 1 -8.1371 -4.6875 4.3664 44 1 -0.1451 -1.4207 1.5729 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182819505.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:06 Heat of formation + Delta-G solvation = -88.891599 kcal Electronic energy + Delta-G solvation = -23813.213477 eV Core-core repulsion = 20307.976747 eV Total energy + Delta-G solvation = -3505.236730 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.77123 -39.03139 -37.00670 -35.09718 -33.89060 -33.71873 -32.58363 -30.32604 -29.41714 -28.73885 -25.50152 -25.06574 -23.85954 -22.22363 -21.50125 -20.85862 -20.50361 -19.41504 -17.68270 -16.72226 -16.34453 -16.13159 -15.39151 -15.06146 -14.90674 -14.80495 -14.64340 -14.57280 -13.90219 -13.62523 -13.27359 -13.15694 -12.96860 -12.67646 -12.46498 -12.33318 -11.88773 -11.64924 -11.52903 -11.38814 -11.21162 -11.09308 -11.02153 -11.00180 -10.72415 -10.53176 -10.46324 -9.99946 -9.67030 -9.64358 -9.18553 -8.95524 -8.56902 -7.59343 -7.48773 -6.76947 -4.38599 2.25666 2.84051 3.09683 3.12762 3.18510 3.53342 3.73229 3.91731 3.95518 4.44724 4.48070 4.54292 4.63376 4.67721 4.89330 5.03180 5.08740 5.14173 5.25632 5.38625 5.44339 5.48663 5.61602 5.63229 5.64507 5.69899 5.75071 5.83704 5.95268 6.08697 6.10974 6.25011 6.30499 6.74655 6.93525 7.02052 7.04909 7.05692 7.24222 7.41265 7.73395 7.79607 7.95820 8.14700 8.23258 8.53723 8.83170 8.86566 9.02386 10.17892 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.025211 B = 0.002607 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.343087 B =10735.854123 C =11626.751742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.212 4.212 11 C -0.099 4.099 12 C -0.218 4.218 13 C -0.127 4.127 14 C 0.563 3.437 15 O -0.546 6.546 16 N -0.738 5.738 17 C 0.124 3.876 18 C -0.123 4.123 19 C 0.094 3.906 20 H 0.061 0.939 21 C -0.150 4.150 22 C -0.123 4.123 23 C -0.157 4.157 24 C 0.060 3.940 25 O -0.374 6.374 26 C -0.093 4.093 27 H 0.284 0.716 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.398 0.602 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.049 0.951 43 H 0.093 0.907 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.784 -12.810 9.826 19.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.232 4.232 11 C -0.117 4.117 12 C -0.238 4.238 13 C -0.130 4.130 14 C 0.353 3.647 15 O -0.425 6.425 16 N -0.392 5.392 17 C 0.000 4.000 18 C -0.161 4.161 19 C 0.036 3.964 20 H 0.079 0.921 21 C -0.188 4.188 22 C -0.160 4.160 23 C -0.195 4.195 24 C -0.017 4.017 25 O -0.293 6.293 26 C -0.113 4.113 27 H 0.096 0.904 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.233 0.767 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.111 0.889 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.293 -11.793 9.941 19.723 hybrid contribution 0.315 0.091 0.052 0.332 sum -11.977 -11.702 9.993 19.500 Atomic orbital electron populations 1.69792 1.07570 1.29765 1.33628 1.25967 0.94773 1.01540 0.92358 0.86291 0.80603 0.80554 0.79191 1.19456 1.19961 1.18402 1.19569 0.98038 0.91004 1.40309 0.90112 1.17606 0.91212 0.92478 0.89123 1.21097 1.03523 0.92821 1.05734 1.20433 0.96085 0.96716 0.98448 1.20339 1.01327 0.94670 1.07458 1.19489 0.96608 0.95313 1.01622 1.18841 0.83198 0.82851 0.79815 1.90696 1.66409 1.30151 1.55201 1.45946 1.31478 1.09780 1.51991 1.21173 0.88189 0.96079 0.94541 1.21824 0.95824 0.97573 1.00887 1.22016 0.87086 0.91892 0.95414 0.92105 1.22207 0.98171 0.97520 1.00882 1.21587 0.95267 1.00661 0.98525 1.22205 0.98633 0.97370 1.01284 1.22558 0.87379 0.95748 0.95996 1.87996 1.21911 1.77258 1.42162 1.21634 0.96431 0.96445 0.96777 0.90439 0.88635 0.88924 0.89242 0.76708 0.92204 0.91043 0.90321 0.89909 0.90876 0.90760 0.91835 0.91515 0.91035 0.91042 0.93226 0.88855 0.84877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.12 10.97 55.55 0.61 -20.51 16 2 C 0.07 1.87 5.14 -17.35 -0.09 1.78 16 3 Si 0.91 19.01 29.59 -169.99 -5.03 13.98 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 7 C -0.46 -12.24 9.05 -37.73 -0.34 -12.58 16 8 H 0.08 2.03 7.90 -52.48 -0.41 1.62 16 9 C 0.10 2.64 5.57 -106.87 -0.59 2.05 16 10 C -0.21 -5.09 9.78 -38.81 -0.38 -5.47 16 11 C -0.10 -2.13 10.01 -39.73 -0.40 -2.52 16 12 C -0.22 -4.64 9.55 -38.92 -0.37 -5.01 16 13 C -0.13 -3.07 5.87 -105.04 -0.62 -3.69 16 14 C 0.56 12.76 7.77 -12.31 -0.10 12.67 16 15 O -0.55 -14.27 16.33 5.31 0.09 -14.18 16 16 N -0.74 -12.67 5.51 -61.23 -0.34 -13.01 16 17 C 0.12 1.84 5.57 -4.04 -0.02 1.81 16 18 C -0.12 -1.30 5.04 -26.73 -0.13 -1.44 16 19 C 0.09 0.93 2.64 -26.69 -0.07 0.86 16 20 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 21 C -0.15 -1.16 5.42 -26.60 -0.14 -1.31 16 22 C -0.12 -0.84 6.03 -26.55 -0.16 -1.00 16 23 C -0.16 -1.12 6.14 -26.59 -0.16 -1.28 16 24 C 0.06 0.53 6.84 37.21 0.25 0.78 16 25 O -0.37 -4.38 9.94 -35.23 -0.35 -4.73 16 26 C -0.09 -2.52 8.23 -38.44 -0.32 -2.84 16 27 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 28 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 29 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.09 1.56 6.38 -52.49 -0.33 1.23 16 31 H 0.40 5.81 6.49 -40.82 -0.26 5.54 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.20 7.82 -51.93 -0.41 0.80 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.13 3.92 5.77 -52.48 -0.30 3.62 16 LS Contribution 358.79 15.07 5.41 5.41 Total: -1.00 -31.09 358.79 -10.03 -41.13 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -6.78 Total: 9.13 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -3.64 Total: -17.21 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.27 Total: -33.52 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.26 Total: -18.91 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.09 -10.03 -41.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182819505.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.766 kcal (2) G-P(sol) polarization free energy of solvation -31.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds